Paleoclimatic Variation and Brain Expansion during Human Evolution

One of the major adaptations during the evolution of Homo sapiens was an increase in brain size. Here we present evidence that a significant and substantial proportion of variation in brain size may be related to changes in temperature. Based on a sample of 109 fossilized hominid skulls, we found that cranial capacities were highly correlated with paleoclimatic changes in temperature, as indexed by oxygen isotope data and sea-surface temperature. Indeed, as much as 52% of the variance in the cranial capacity of these skulls could be accounted for by temperature variation at 100 ka intervals. As an index of more short-term seasonal fluctuations in temperature, we examined the latitude of the sites from which the crania originated. More than 22% of the variance in cranial capacity of these skulls could be accounted for by variation in equatorial distance.     

Expansion of Multipotent Stem Cells from the Adult Human Brain

The discovery of stem cells in the adult human brain has revealed new possible scenarios for treatment of the sick or injured brain. Both clinical use of and preclinical research on human adult neural stem cells have, however, been seriously hampered by the fact that it has been impossible to passage these cells more than a very few times and with little expansion of cell numbers. Having explored a number of alternative culturing conditions we here present an efficient method for the establishment and propagation of human brain stem cells from whatever brain tissue samples we have tried. We describe virtually unlimited expansion of an authentic stem cell phenotype. Pluripotency proteins Sox2 and Oct4 are expressed without artificial induction. For the first time multipotency of adult human brain-derived stem cells is demonstrated beyond tissue boundaries. We characterize these cells in detail in vitro including microarray and proteomic approaches. Whilst clarification of these cells’ behavior is ongoing, results so far portend well for the future repair of tissues by transplantation of an adult patient’s own-derived stem cells.     

African Wild Dog Dispersal and Implications for Management

Successful conservation of species that roam and disperse over large areas requires detailed understanding of their movement patterns and connectivity between subpopulations. But empirical information on movement, space use, and connectivity is lacking for many species, and data acquisition is often hindered when study animals cross international borders. The African wild dog (Lycaon pictus) exemplifies such species that require vast undisturbed areas to support viable, self-sustaining populations. To study wild dog dispersal and investigate potential barriers to movements and causes of mortality during dispersal, between 2016 and 2019 we followed the fate of 16 dispersing coalitions (i.e., same-sex group of ≥1 dispersing African wild dogs) in northern Botswana through global positioning system (GPS)-satellite telemetry. Dispersing wild dogs covered ≤54 km in 24 hours and traveled 150 km to Namibia and 360 km to Zimbabwe within 10 days. Wild dogs were little hindered in their movements by natural landscape features, whereas medium to densely human-populated landscapes represented obstacles to dispersal. Human-caused mortality was responsible for >90% of the recorded deaths. Our results suggest that a holistic approach to the management and conservation of highly mobile species is necessary to develop effective research and evidence-based conservation programs across transfrontier protected areas, including the need for coordinated research efforts through collaboration between national and international conservation authorities. © 2020 The Wildlife Society.     

Culture, Speciation and the Genus Homo in Early Humans

Human behaviour, in addition to morphology, is essential to identify man. The characteristics of cultural behaviour are expressed by planning in tool making and territorial organization and by their meaning in the context of life. Cultural behaviour enriched the adaptive strategies of the human species and took on significance in the definition of the genus Homo since H. habilis/H. rudolfensis. Culture probably played a double role in the process of human speciation: (1) in isolation and differentiation from other groups of hominids that did not had such behaviour; and (2) in adaptation to the environment and in communication between groups that had the same cultural behaviour, thus slowing down or preventing the conditions of isolation that lead to new species.     

MtDNA Evidence for Repeated Pulses of Speciation Within Arvicoline and Murid Rodents

We examined temporal aspects of phylogenetic relationships among 5 murid rodent subfamilies and 11 arvicoline genera based on DNA sequences of the cytochrome b gene (n = 92) and ND4 gene (n = 17). We found monophyly for Muridae but a polytomy among murid subfamilies. Arvicolinae was monophyletic, but most genera within this subfamily arose from a polytomy. Microtus was monophyletic, but within the genus, species arose rapidly. This pattern of nested pulses (polytomies) was recovered across parsimony, distance, and likelihood methods and indicates that accumulation of taxonomic diversity in murids was sporadic, rather than gradual. Arvicolines appeared in the Late Miocene and diversified later, between 3 and 5 million years ago. A relatively high rate of sequence evolution (i.e., 2.3% in third-position transversions per million years) helps reconcile the diversification of fossils and mtDNA lineages.     

Investigation of Early Plasma Evolution Induced by Ultrashort Laser Pulses

Early plasma is generated owing to high intensity laser irradiation of target and the subsequent target material ionization. Its dynamics plays a significant role in laser-material interaction, especially in the air environment^1-11.Early plasma evolution has been captured through pump-probe shadowgraphy^1-3 and interferometry^1,4-7. However, the studied time frames and applied laser parameter ranges are limited. For example, direct examinations of plasma front locations and electron number densities within a delay time of 100 picosecond (ps) with respect to the laser pulse peak are still very few, especially for the ultrashort pulse of a duration around 100 femtosecond (fs) and a low power density around 10¹⁴ W/cm². Early plasma generated under these conditions has only been captured recently with high temporal and spatial resolutions¹². The detailed setup strategy and procedures of this high precision measurement will be illustrated in this paper. The rationale of the measurement is optical pump-probe shadowgraphy: one ultrashort laser pulse is split to a pump pulse and a probe pulse, while the delay time between them can be adjusted by changing their beam path lengths. The pump pulse ablates the target and generates the early plasma, and the probe pulse propagates through the plasma region and detects the non-uniformity of electron number density. In addition, animations are generated using the calculated results from the simulation model of Ref. ¹² to illustrate the plasma formation and evolution with a very high resolution (0.04 ~ 1 ps).Both the experimental method and the simulation method can be applied to a broad range of time frames and laser parameters. These methods can be used to examine the early plasma generated not only from metals, but also from semiconductors and insulators.     

Accelerated Evolution of the ASPM Gene Controlling Brain Size Begins Prior to Human Brain Expansion

Primary microcephaly (MCPH) is a neurodevelopmental disorder characterized by global reduction in cerebral cortical volume. The microcephalic brain has a volume comparable to that of early hominids, raising the possibility that some MCPH genes may have been evolutionary targets in the expansion of the cerebral cortex in mammals and especially primates. Mutations in ASPM, which encodes the human homologue of a fly protein essential for spindle function, are the most common known cause of MCPH. Here we have isolated large genomic clones containing the complete ASPM gene, including promoter regions and introns, from chimpanzee, gorilla, orangutan, and rhesus macaque by transformation-associated recombination cloning in yeast. We have sequenced these clones and show that whereas much of the sequence of ASPM is substantially conserved among primates, specific segments are subject to high Ka/Ks ratios (nonsynonymous/synonymous DNA changes) consistent with strong positive selection for evolutionary change. The ASPM gene sequence shows accelerated evolution in the African hominoid clade, and this precedes hominid brain expansion by several million years. Gorilla and human lineages show particularly accelerated evolution in the IQ domain of ASPM. Moreover, ASPM regions under positive selection in primates are also the most highly diverged regions between primates and nonprimate mammals. We report the first direct application of TAR cloning technology to the study of human evolution. Our data suggest that evolutionary selection of specific segments of the ASPM sequence strongly relates to differences in cerebral cortical size.     

Dispersal and migration of juvenile African Black Oystercatchers Haematopus moquini

African Black Oystercatchers Haematopus moquini are sedentary as adults. However, colour-ringing of more than 700 juveniles has revealed complex post-fledging movements that vary geographically. Young from the western part of the breeding range either remain within 150 km of their natal site or migrate 1500–2000 km to one of five discrete nursery areas on the Namib Desert coast of central and northern Namibia, and southern Angola. These nurseries all lie north of the species' breeding range. We calculate that 36–46% of all juveniles born in South Africa migrate to nurseries. Birds return to their natal sites from nurseries at 2–3 years old, but never migrate again. Juveniles from the eastern part of the range undertake 'diffusion dispersal', regularly up to 1000 km, but these journeys mostly end within the breeding range, where there are no nurseries. Very few eastern birds reach nurseries. There is no evidence that movements of western birds are density-dependent responses to hatching date, but long-distance migrants are significantly heavier as chicks than are short-distance dispersers. We hypothesize that a genetic basis exists to these movements, possibly triggered by body condition, that could account not only for the highly dichotomous behaviour of western birds, but also for the intermediate behaviour of eastern birds.     

Dispersal and migration of juvenile African Black Oystercatchers Haematopus moquini

African Black Oystercatchers Haematopus moquini are sedentary as adults. However, colour-ringing of more than 700 juveniles has revealed complex post-fledging movements that vary geographically. Young from the western part of the breeding range either remain within 150 km of their natal site or migrate 1500–2000 km to one of five discrete nursery areas on the Namib Desert coast of central and northern Namibia, and southern Angola. These nurseries all lie north of the species' breeding range. We calculate that 36–46% of all juveniles born in South Africa migrate to nurseries. Birds return to their natal sites from nurseries at 2–3 years old, but never migrate again. Juveniles from the eastern part of the range undertake 'diffusion dispersal', regularly up to 1000 km, but these journeys mostly end within the breeding range, where there are no nurseries. Very few eastern birds reach nurseries. There is no evidence that movements of western birds are density-dependent responses to hatching date, but long-distance migrants are significantly heavier as chicks than are short-distance dispersers. We hypothesize that a genetic basis exists to these movements, possibly triggered by body condition, that could account not only for the highly dichotomous behaviour of western birds, but also for the intermediate behaviour of eastern birds.     

华北泥河湾盆地植被、气候与早期人类生存环境研究进展

中国北方泥河湾盆地可以与非洲奥杜威峡谷相媲美,它们具有十分相似的地质演化过程,这里河湖相沉积发育,并且蕴藏着丰富的古生物化石和大量古人类遗迹,是研究东亚早期人类生存环境变化的重要区域。基于前人积累的晚上新世以来植被、气候及早期人类生存环境的大量研究资料,经分析发现在大约2.6Ma(百万年),泥河湾盆地的植被由阔叶林转变为以针叶林为主;大约1.92 Ma以后,植被以温带森林-草原(主要是松属、蒿属及藜科)/温带草原(主要是蒿属和禾本科等)为主。通过对比发现,晚上新世以来中国北方从西部到中部,由森林转变为以森林-草原为主的植被类型出现的时段呈现明显的阶梯型。此外,泥河湾盆地气候出现了13个冷暖旋回, 15个干湿旋回,显著的冷干事件发生在2.8 Ma、2.6 Ma、1.92 Ma及143.8 ka (千年),湿润事件发生在43、32和6.6 ka。早期人类生活在森林-草原或以草原为主的植被环境中,气候冷暖干湿波动较大,水源丰富,大量哺乳动物共存。建议在建立泥河湾人类遗址更为精细地层的年代框架下,开展古气候温度与降水参数的定量化研究,将有助于精准重建古人类生存环境及揭示其变化规律。     

Reconciling Oil Palm Expansion and Climate Change Mitigation in Kalimantan,Indonesia

Our society faces the pressing challenge of increasing agricultural production while minimizing negative consequences on ecosystems and the global climate. Indonesia, which has pledged to reduce greenhouse gas (GHG) emissions from deforestation while doubling production of several major agricultural commodities, exemplifies this challenge. Here we focus on palm oil, the world’s most abundant vegetable oil and a commodity that has contributed significantly to Indonesia’s economy. Most oil palm expansion in the country has occurred at the expense of forests, resulting in significant GHG emissions. We examine the extent to which land management policies can resolve the apparently conflicting goals of oil palm expansion and GHG mitigation in Kalimantan, a major oil palm growing region of Indonesia. Using a logistic regression model to predict the locations of new oil palm between 2010 and 2020 we evaluate the impacts of six alternative policy scenarios on future emissions. We estimate net emissions of 128.4–211.4 MtCO₂ yr^-1 under business as usual expansion of oil palm plantations. The impact of diverting new plantations to low carbon stock land depends on the design of the policy. We estimate that emissions can be reduced by 9-10% by extending the current moratorium on new concessions in primary forests and peat lands, 35% by limiting expansion on all peat and forestlands, 46% by limiting expansion to areas with moderate carbon stocks, and 55–60% by limiting expansion to areas with low carbon stocks. Our results suggest that these policies would reduce oil palm profits only moderately but would vary greatly in terms of cost-effectiveness of emissions reductions. We conclude that a carefully designed and implemented oil palm expansion plan can contribute significantly towards Indonesia’s national emissions mitigation goal, while allowing oil palm area to double.     

African Origin and Europe-Mediated Global Dispersal of The Cyanobacterium Microcystis aeruginosa

Microcystis aeruginosa is a bloom-forming cyanobacteria, which currently has a cosmopolitan distribution. Since M. aeruginosa can produce toxic compounds across all continents that it inhabits, it is of major public health relevance to assess its origin and dispersal. Thus, we conducted a worldwide study using 29 isolates representative of all the main continents, and used a concatenated genetic system for phylogenetic analyses consisting of four genetic markers (spanning ca. 3,485 bp). Our results support an early origin of M. aeruginosa in the African continent, with a subsequent dispersal to establish a second genetic pool in the European continent, from where M. aeruginosa then colonized the remaining continental regions. Our findings indicate that the European population has a cosmopolitan distribution, and is genetically closer to populations from Africa and North America. Our study also highlights the utility of using a concatenated dataset for phylogenetic inferences in cyanobacteria.     

Synchrony of Seed Dispersal, Hydrology and Local Climate in a Semi-arid River Reach in California

The temporal availability of propagules is a critical factor in sustaining pioneer riparian tree populations along snowmelt-driven rivers because seedling establishment is strongly linked to seasonal hydrology. River regulation in semi-arid regions threatens to decouple seed development and dispersal from the discharge regime to which they evolved. Using the lower Tuolumne River as a model system, we quantified and modeled propagule availability for Populus fremontii (POFR), Salix gooddingii (SAGO), and Salix exigua (SAEX), the tree and shrub species that dominate near-channel riparian stands in the San Joaquin Basin, CA. A degree-day model was fit to field data of seasonal seed density and local temperature from three sites in 2002–2004 to predict the onset of the peak dispersal period. To evaluate historical synchrony of seed dispersal and seasonal river hydrology, we compared peak spring runoff timing to modeled peak seed release periods for the last 75 years. The peak seed release period began on May 15 for POFR (range April 23–June 10), May 30 for SAGO (range May 19–June 11) and May 31 for SAEX (range May 8–June 30). Degree-day models for the onset of seed release reduced prediction error by 40–67% over day-of-year means; the models predicted best the interannual, versus site-to-site, variation in timing. The historical analysis suggests that POFR seed release coincided with peak runoff in almost all years, whereas SAGO and SAEX dispersal occurred during the spring flood recession. The degree-day modeling approach reduce uncertainty in dispersal timing and shows potential for guiding flow releases on regulated rivers to increase riparian tree recruitment at the lowest water cost.     

Losses of Total Phosphorus from Watersheds Influenced by Various Human Activity

In territories without settlements, major livestock production or industry, and from territories devoted to row-crop agriculture (diffuse pollution sources), the annual mean concentrations of total phosphorus compounds in waterways were found to be 17 to 43 μg · 1⁻¹ P. Where there are point or hybrid pollution sources in watersheds, the annual average concentrations vary from 56 to 410 μg · 1⁻¹ P. It was found that annual average total phosphorus concentration values obtained from three-week sampling intervals can be used to show the presence of diffuse, hybrid and point pollution sources. The main sources of the high and permanent total phosphorus concentrations were densely populated areas, industrial works, agriculture, inadequately managed farms and disposal sites for solid and liquid wastes.     

Lessons Learned While Integrating Habitat,Dispersal, Disturbance,and Life-History Traits into Species Habitat Models Under Climate Change

We present an approach to modeling potential climate-driven changes in habitat for tree and bird species in the eastern United States. First, we took an empirical-statistical modeling approach, using randomForest, with species abundance data from national inventories combined with soil, climate, and landscape variables, to build abundance-based habitat models for 134 tree and 147 bird species. We produced lists of species for which suitable habitat tends to increase, decrease, or stay the same for any region. Independent assessments of trends of large trees versus seedlings across the eastern U.S. show that 37 of 40 species in common under both studies are currently trending as modeled. We developed a framework, ModFacs, in which we used the literature to assign default modification factor scores for species characteristics that cannot be readily assessed in such models, including 12 disturbance factors (for example, drought, fire, insect pests), nine biological factors (for example, dispersal, shade tolerance), and assessment scores of novel climates, long-distance extrapolations, and output variability by climate model and emission scenario. We also used a spatially explicit cellular model, SHIFT, to calculate colonization potentials for some species, based on their abundance, historic dispersal distances, and the fragmented nature of the landscape. By combining results from the three efforts, we can create projections of potential climate change impacts over the next 100 years or so. Here we emphasize some of the lessons we have learned over 16 years in hopes that they may help guide future experiments, modeling efforts, and management.     

Evaluating the Photoprotective Effects of Ochre on Human Skin by In Vivo SPF Assessment: Implications for Human Evolution,Adaptation and Dispersal

Archaeological indicators of cognitively modern behaviour become increasingly prevalent during the African Middle Stone Age (MSA). Although the exploitation of ochre is viewed as a key feature of the emergence of modern human behaviour, the uses to which ochre and ochre-based mixtures were put remain ambiguous. Here we present the results of an experimental study exploring the efficacy of ochre as a topical photoprotective compound. This is achieved through the in vivo calculation of the sun protection factor (SPF) values of ochre samples obtained from Ovahimba women (Kunene Region, Northern Namibia) and the Palaeozoic Bokkeveld Group deposits of the Cape Supergroup (Western Cape Province, South Africa). We employ visible spectroscopy, energy-dispersive X-ray fluorescence (ED-XRF), X-ray diffraction (XRD) and granulometric analyses to characterise ochre samples. The capacity of ochre to inhibit the susceptibility of humans to the harmful effects of exposure to ultraviolet radiation (UVR) is confirmed and the mechanisms implicated in the efficacy of ochre as a sunscreen identified. It is posited that the habitual application of ochre may have represented a crucial innovation for MSA humans by limiting the adverse effects of ultraviolet exposure. This may have facilitated the colonisation of geographic regions largely unfavourable to the constitutive skin colour of newly arriving populations.     

The Bias and Signal Attenuation Present in Conventional Pollen-Based Climate Reconstructions as Assessed by Early Climate Data from Minnesota,USA

The inference of past temperatures from a sedimentary pollen record depends upon the stationarity of the pollen-climate relationship. However, humans have altered vegetation independent of changes to climate, and consequently modern pollen deposition is a product of landscape disturbance and climate, which is different from the dominance of climate-derived processes in the past. This problem could cause serious signal distortion in pollen-based reconstructions. In the north-central United States, direct human impacts have strongly altered the modern vegetation and hence the pollen rain since Euro-American settlement in the mid-19^th century. Using instrumental temperature data from the early 1800s from Fort Snelling (Minnesota), we assessed the signal distortion and bias introduced by using the conventional method of inferring temperature from pollen assemblages in comparison to a calibration set from pre-settlement pollen assemblages and the earliest instrumental climate data. The early post-settlement calibration set provides more accurate reconstructions of the 19^th century instrumental record, with less bias, than the modern set does. When both modern and pre-industrial calibration sets are used to reconstruct past temperatures since AD 1116 from pollen counts from a varve-dated record from Lake Mina, Minnesota, the conventional inference method produces significant low-frequency (centennial-scale) signal attenuation and positive bias of 0.8-1.7°C, resulting in an overestimation of Little Ice Age temperature and likely an underestimation of the extent and rate of anthropogenic warming in this region. However, high-frequency (annual-scale) signal attenuation exists with both methods. Hence, we conclude that any past pollen spectra from before Euro-American settlement in this region should be interpreted using a pre-Euro-American settlement pollen set, paired to the earliest instrumental climate records. It remains to be explored how widespread this problem is when conventional pollen-based inference methods are used, and consequently how seriously regional manifestations of global warming have been underestimated with traditional pollen-based techniques.     

Chromosome Inversions,Genomic Differentiation and Speciation in the African Malaria Mosquito Anopheles gambiae

The African malaria vector, Anopheles gambiae, is characterized by multiple polymorphic chromosomal inversions and has become widely studied as a system for exploring models of speciation. Near complete reproductive isolation between different inversion types, known as chromosomal forms, has led to the suggestion that A. gambiae is in early stages of speciation, with divergence evolving in the face of considerable gene flow. We compared the standard chromosomal arrangement (Savanna form) with genomes homozygous for j, b, c, and u inversions (Bamako form) in order to identify regions of genomic divergence with respect to inversion polymorphism. We found levels of divergence between the two sub-taxa within some of these inversions (2Rj and 2Rb), but at a level lower than expected and confined near the inversion breakpoints, consistent with a gene flux model. Unexpectedly, we found that the majority of diverged regions were located on the X chromosome, which contained half of all significantly diverged regions, with much of this divergence located within exons. This is surprising given that the Bamako and Savanna chromosomal forms are both within the S molecular form that is defined by a locus near centromere of X chromosome. Two X-linked genes (a heat shock protein and P450 encoding genes) involved in reproductive isolation between the M and S molecular forms of A. gambiae were also significantly diverged between the two chromosomal forms. These results suggest that genes mediating reproductive isolation are likely located on the X chromosome, as is thought to be the case for the M and S molecular forms. We conclude that genes located on the sex chromosome may be the major force driving speciation between these chromosomal forms of A. gambiae.