Changes in Asymbiotic, Heterotrophic Nitrogen Fixation on Leaf Litter of Metrosideros polymorpha with Long-Term Ecosystem Development in Hawaii

We measured nitrogenase activity (acetylene reduction) of asymbiotic, heterotrophic, nitrogen-fixing bacteria on leaf litter from the tree Metrosideros polymorpha collected from six sites on the Hawaiian archipelago. At all sites M. polymorpha was the dominant tree, and its litter was the most abundant on the forest floor. The sites spanned a soil chronosequence of 300 to 4.1 million y. We estimated potential nitrogen fixation associated with this leaf litter to be highest at the youngest site (1.25 kg ha^-1 y^-1), declining to between 0.05 and 0.22 kg ha^-1 y^-1 at the oldest four sites on the chronosequence. To investigate how the availability of weathered elements influences N fixation rates at different stages of soil development, we sampled M. polymorpha leaf litter from complete, factorial fertilization experiments located at the 300-y, 20,000-y and 4.1 million–y sites. At the youngest and oldest sites, nitrogenase activity on leaf litter increased significantly in the plots fertilized with phosphorus and “total” (all nutrients except N and P); no significant increases in nitrogenase activity were measured in leaf litter from treatments at the middle-aged site. The results suggest that the highest rates of N fixation are sustained during the “building” or early phase of ecosystem development when N is accumulating and inputs of geologically cycled (lithophilic) nutrients from weathering are substantial. Received 4 February 1999; accepted 29 March 2000.     

Composition,Seasonal Dynamics,and Long-Term Fluctuations in the Density of Pelagic Polychaetes in Amurskii Bay,Sea of Japan

This is the first survey of the composition and seasonal density dynamics of the pelagic polychaete larvae in Amurskii Bay. This is a summary of the results of two years of observations (1996–1998). The larvae of 14 polychaete families have been recorded. The greatest number of species have been found in the family Spionidae. The most common were the larvae of Harmothoe imbricata (family Polynoidae) and Paraprionospio sp. (family Spionidae). The larvae of polychaetes have been found in plankton throughout the year and have two density peaks. The first peak was due to the spawning of H. imbricata; the second one was provided by representatives of several species of the family Spionidae, mostly Paraprionospio sp., Polydora ciliata, and P. caeca.     

Spatial and Temporal Variation in Enterococcal Abundance and Its Relationship to the Microbial Community in Hawaii Beach Sand and Water

Recent studies have reported high levels of fecal indicator enterococci in marine beach sand. This study aimed to determine the spatial and temporal variation of enterococcal abundance and to evaluate its relationships with microbial community parameters in Hawaii beach sand and water. Sampling at 23 beaches on the Island of Oahu detected higher levels of enterococci in beach foreshore sand than in beach water on a mass unit basis. Subsequent 8-week consecutive samplings at two selected beaches (Waialae and Kualoa) consistently detected significantly higher levels of enterococci in backshore sand than in foreshore/nearshore sand and beach water. Comparison between the abundance of enterococci and the microbial communities showed that enterococci correlated significantly with total Vibrio in all beach zones but less significantly with total bacterial density and Escherichia coli. Samples from the different zones of Waialae beach were sequenced by 16S rRNA gene pyrosequencing to determine the microbial community structure and diversity. The backshore sand had a significantly more diverse community and contained different major bacterial populations than the other beach zones, which corresponded to the spatial distribution pattern of enterococcal abundance. Taken together, multiple lines of evidence support the possibility of enterococci as autochthonous members of the microbial community in Hawaii beach sand.     

Links between Geographic Location, Environmental Factors, and Microbial Community Composition in Sediments of the Eastern Mediterranean Sea

The bacterial community composition of marine surface sediments originating from various regions of the Eastern Mediterranean Sea (12 sampling sites) was compared by parallel use of three fingerprinting methods: analysis of 16S rRNA gene fragment heterogeneity by denaturing gradient electrophoresis (DGGE), terminal restriction fragment length polymorphism (T-RFLP), and analysis of phospholipid-linked fatty acid composition (PLFA). Sampling sites were located at variable depths (30–2860 m; water column depth above the sediments) and the sediments differed greatly also in their degree of petroleum contamination (0.4–18 μg g⁻¹), organic carbon (0.38–1.5%), and chlorophyll a content (0.01–7.7 μg g⁻¹). Despite a high degree of correlation between the three different community fingerprint methods, some major differences were observed. DGGE banding patterns showed a significant separation of sediment communities from the northern, more productive waters of the Thermaikos Gulf and the oligotrophic waters of the Cretan, S. Ionian, and Levantine Sea. T-RFLP analysis clearly separated the communities of deep sediments (>1494 m depth) from their shallow (<617 m) counterparts. PLFA analysis grouped a shallow station from the productive waters of the north with the deep oligotrophic sediments from the Ionian and Levantine Sea, with low concentrations of PLFAs, and hence low microbial biomass, as the common denominator. The degree of petroleum contamination was not significantly correlated to the apparent composition of the microbial communities for any of the three methods, whereas organic carbon content and sediment chlorophyll a were important in this regard.     

Patterns of Ecosystem Metabolism in the Tonle Sap Lake,Cambodia with Links to Capture Fisheries

The Tonle Sap Lake in Cambodia is a dynamic flood-pulsed ecosystem that annually increases its surface area from roughly 2,500 km² to over 12,500 km² driven by seasonal flooding from the Mekong River. This flooding is thought to structure many of the critical ecological processes, including aquatic primary and secondary productivity. The lake also has a large fishery that supports the livelihoods of nearly 2 million people. We used a state-space oxygen mass balance model and continuous dissolved oxygen measurements from four locations to provide the first estimates of gross primary productivity (GPP) and ecosystem respiration (ER) for the Tonle Sap. GPP averaged 4.1±2.3 g O₂ m⁻³ d⁻¹ with minimal differences among sites. There was a negative correlation between monthly GPP and lake level (r = 0.45) and positive correlation with turbidity (r = 0.65). ER averaged 24.9±20.0 g O₂ m⁻³ d⁻¹ but had greater than six-fold variation among sites and minimal seasonal change. Repeated hypoxia was observed at most sampling sites along with persistent net heterotrophy (GPP<ER), indicating significant bacterial metabolism of organic matter that is likely incorporated into the larger food web. Using our measurements of GPP, we calibrated a hydrodynamic-productivity model and predicted aquatic net primary production (aNPP) of 2.0±0.2 g C m⁻² d⁻¹ (2.4±0.2 million tonnes C y⁻¹). Considering a range of plausible values for the total fisheries catch, we estimate that fisheries harvest is an equivalent of 7–69% of total aNPP, which is substantially larger than global average for marine and freshwater systems. This is likely due to relatively efficient carbon transfer through the food web and support of fish production from terrestrial NPP. These analyses are an important first-step in quantifying the resource pathways that support this important ecosystem.     

Additive,Epistatic, and Environmental Effects Through the Lens of Expression Variability QTL in a Twin Cohort

The expression of a gene can vary across individuals in the general population, as well as between monozygotic twins. This variable expression is assumed to be due to the influence of both genetic and nongenetic factors. Yet little evidence supporting this assumption has been obtained from empirical data. In this study, we used expression data from a large twin cohort to investigate the influences of genetic and nongenetic factors on variable gene expression. We focused on a set of expression variability QTL (evQTL)—i.e., genetic loci associated with the variance, as opposed to the mean, of gene expression. We identified evQTL for 99, 56, and 79 genes in lymphoblastoid cell lines, skin, and fat, respectively. The differences in gene expression, measured by the relative mean difference (RMD), tended to be larger between pairs of dizygotic (DZ) twins than between pairs of monozygotic (MZ) twins, showing that genetic background influenced the expression variability. Furthermore, a more profound RMD was observed between pairs of MZ twins whose genotypes were associated with greater expression variability than the RMD found between pairs of MZ twins whose genotypes were associated with smaller expression variability. This suggests that nongenetic (e.g., environmental) factors contribute to the variable expression. Lastly, we demonstrated that the formation of evQTL is likely due to partial linkages between eQTL SNPs that are additively associated with the mean of gene expression; in most cases, no epistatic effect is involved. Our findings have implications for understanding divergent sources of gene expression variability.     

Fluctuations in leaf water balance,with a period of 1 to 10 minutes

Summary Water uptake into leaves, and water vapour efflux from leaves, were found to show short-term fluctuations. The fluctuations were observed in a number of parameters of leaf water metabolism. It is suggested that this behaviour is a result of time lags in the transmission of changes in water potential through the leaf.     

Long-Term Climate Regime Modulates the Impact of Short-Term Climate Variability on Decomposition in Alpine Grassland Soils

Decomposition of plant litter is an important process in the terrestrial carbon cycle and makes up approximately 70% of the global carbon flux from soils to the atmosphere. Climate change is expected to have significant direct and indirect effects on the litter decomposition processes at various timescales. Using the TeaBag Index, we investigated the impact on decomposition of short-term direct effects of temperature and precipitation by comparing temporal variability over years, versus long-term climate impacts that incorporate indirect effects mediated through environmental changes by comparing sites along climatic gradients. We measured the initial decomposition rate (k) and the stabilization factor (S; amount of labile litter stabilizing) across a climate grid combining three levels of summer temperature (6.5–10.5°C) with four levels of annual precipitation (600–2700 mm) in three summers with varying temperature and precipitation. Several (a)biotic factors were measured to characterize environmental differences between sites. Increased temperatures enhanced k, whereas increased precipitation decreased k across years and climatic regimes. In contrast, S showed diverse responses to annual changes in temperature and precipitation between climate regimes. Stabilization of labile litter fractions increased with temperature only in boreal and sub-alpine sites, while it decreased with increasing precipitation only in sub-alpine and alpine sites. Environmental factors such as soil pH, soil C/N, litter C/N, and plant diversity that are associated with long-term climate variation modulate the response of k and S. This highlights the importance of long-term climate in shaping the environmental conditions that influences the response of decomposition processes to climate change.     

Demographic Stochasticity, Environmental Variability, and Windows of Invasion Risk for Bythotrephes Longimanus in North America

Biological invasions are a leading threat to freshwater biodiversity worldwide. A central unanswered question of invasion ecology is why some introduced populations establish while most fail. Answering this question will allow resource managers to increase the specificity and effectiveness of control efforts and policy. We studied the establishment of spiny water flea (Bythotrephes longimanus) in the United States and Canada by modeling introduction failure caused by demographic stochasticity, environmental variation, and seasonal environmental forcing. We compared predicted establishment rates with observed invasions of inland lakes in Ontario, Canada. Our findings suggest that environmental forcing can cause “windows” of invasion opportunity so that timing of introductions might be a greater determinant of population establishment than demographic stochasticity and random environmental variation. We expect this phenomenon to be exhibited by species representing a wide range of life histories. For spiny water flea in North America, a large window of invasion opportunity opens around the fourth week of May, persists through the summer, and closes with decreasing water temperatures in autumn. These results show how timing of introductions with respect to seasonally forced environmental drivers can be a key determinant of establishment success. By focusing on introductions during windows of invasion opportunity, resource managers can more effectively control invasion rates.     

Genetic Variability at the Esterase-6 Locus in Natural Populations of DROSOPHILA SIMULANS in Relation to Environmental Heterogeneity

The allozymic variation at the esterase-6 locus was examined in fourteen samples of natural populations of Drosophila simulans collected in two different localities. The samples were collected from different species of fruits in the two localities and from banana baits located some meters apart from the fruits. The analysis was done by sequential electrophoresis, using varied gel concentrations and buffers. By this technique, we detected 27 alleles at the esterase-6 locus, where only five alleles were detected by the usual method. The results obtained suggest that habitat choice alone may not be a selective factor, but may be selective in combination with other environmental factors.     

A Long-Term Assessment of the Variability in Winter Use of Dense Conifer Cover by Female White-Tailed Deer

Backgound

Long-term studies allow capture of a wide breadth of environmental variability and a broader context within which to maximize our understanding of relationships to specific aspects of wildlife behavior. The goal of our study was to improve our understanding of the biological value of dense conifer cover to deer on winter range relative to snow depth and ambient temperature.

Methodology/Principal Findings

We examined variation among deer in their use of dense conifer cover during a 12-year study period as potentially influenced by winter severity and cover availability. Female deer were fitted with a mixture of very high frequency (VHF, n = 267) and Global Positioning System (GPS, n = 24) collars for monitoring use of specific cover types at the population and individual levels, respectively. We developed habitat composites for four study sites. We fit multinomial response models to VHF (daytime) data to describe population-level use patterns as a function of snow depth, ambient temperature, and cover availability. To develop alternative hypotheses regarding expected spatio-temporal patterns in the use of dense conifer cover, we considered two sets of competing sub-hypotheses. The first set addressed whether or not dense conifer cover was limiting on the four study sites. The second set considered four alternative sub-hypotheses regarding the potential influence of snow depth and ambient temperature on space use patterns. Deer use of dense conifer cover increased the most with increasing snow depth and most abruptly on the two sites where it was most available, suggestive of an energy conservation strategy. Deer use of dense cover decreased the most with decreasing temperatures on the sites where it was most available. At all four sites deer made greater daytime use (55 to >80% probability of use) of open vegetation types at the lowest daily minimum temperatures indicating the importance of thermal benefits afforded from increased exposure to solar radiation. Date-time plots of GPS data (24 hr) allowed us to explore individual diurnal and seasonal patterns of habitat use relative to changes in snow depth. There was significant among-animal variability in their propensity to be found in three density classes of conifer cover and other open types, but little difference between diurnal and nocturnal patterns of habitat use.

Conclusions/Significance

Consistent with our findings reported elsewhere that snow depth has a greater impact on deer survival than ambient temperature, herein our population-level results highlight the importance of dense conifer cover as snow shelter rather than thermal cover. Collectively, our findings suggest that maximizing availability of dense conifer cover in an energetically beneficial arrangement with quality feeding sites should be a prominent component of habitat management for deer.     

Temporal Changes in Local Functional Connectivity Density Reflect the Temporal Variability of the Amplitude of Low Frequency Fluctuations in Gray Matter

Data-driven functional connectivity density (FCD) mapping is being increasingly utilized to assess brain connectomics at rest in the healthy brain and its disruption in neuropsychiatric diseases with the underlying assumption that the spatiotemporal hub distribution is stationary. However, recent studies show that functional connectivity is highly dynamic. Here we study the temporal variability of the local FCD (lFCD) at high spatiotemporal resolution (2-mm isotropic; 0.72s) using a sliding-window approach and ‘resting-state’ datasets from 40 healthy subjects collected under the Human Connectome Project. Prominent functional connectivity hubs in visual and posterior parietal cortices had pronounced temporal changes in local FCD. These dynamic patterns in the strength of the lFCD hubs occurred in cortical gray matter with high sensitivity (up to 85%) and specificity (> 85%) and showed high reproducibility (up to 72%) across sessions and high test-retest reliability (ICC(3,1) > 0.5). The temporal changes in lFCD predominantly occurred in medial occipitoparietal regions and were proportional to the strength of the connectivity hubs. The temporal variability of the lFCD was associated with the amplitude of the low frequency fluctuations (ALFF). Pure randomness did not account for the probability distribution of lFCD. Shannon entropy increased in proportion to the strength of the lFCD hubs suggesting high average flow of information per unit of time in the lFCD hubs, particularly in medial occipitoparietal regions. Thus, the higher dynamic range of the lFCD hubs is consistent with their role in the complex orchestration of interacting brain networks.     

Ecological Consequences of Long-Term Exposure of Anabaena variabilis (Cyanophyceae) to Shifts in Environmental Factors

Cultures of Anabaena variabilis were exposed to different light intensities, and the time course of photoadaptation was measured by photosynthetic rate and changes in pigmentation. A shift down in intensity of 284 μEin · m⁻² · sec⁻¹ caused a temporary decrease in the photosynthetic response followed by gradual adaptation to the new conditions. Final chlorophyll a and carotenoid concentrations were reached after 1 day, although other physiological indicators showed that adaptation required 4 days. The parameter I_k was shown to be the best indicator of photoadaptation. A shift up in light intensity of the same magnitude also required 4 days for complete photoadaptation by the culture, although chlorophyll and carotenoid concentrations stabilized within 1 day. A shift down in light intensity of 392 μEin · m⁻² · sec⁻¹ resulted in a temporary attempt to adapt followed by collapse of the population. This demonstrates an apparent threshold in the magnitude of the shift in light intensity which will permit successful adaptation. Simultaneous changes in light intensity and temperature also adversely affected culture populations. Our observations present a possible cause for the decline or prevention of an algal bloom under a fluctuating light regime and suggest that it may be possible to predict this decline as a result of synoptic weather patterns or hydrodynamic influences.     

Environmental Variability, Historical Contingency, and the Structure of Regional Fish and Macroinvertebrate Faunas in Ouachita Mountain Stream Systems

In 1990–1992, the United States Forest Service sampled six hydrologically variable streams paired in three different drainage basins in the Ouachita Mountains, Arkansas, U.S.A. Fishes, macroinvertebrates, and stream environmental variables were quantified for each stream. We used these data to examine the relationship between regional faunas (based on taxonomy and trophic affiliation of fishes and macroinvertebrates) and measured environmental variables. Because fishes are constrained to their historically defined drainage basins and many insect taxa are able to cross basin barriers, we anticipated that both groups would respond differently to environmental variability. Fishes were influenced more by environmental variability that was unique to their historical drainage basins, but macroinvertebrates were associated more strongly with environmental variability that was independent of drainage basins. Thus, the individual drainage basins represented a historical constraint on regional patterns of fish assembly. For both fishes and macroinvertebrates, groupings based on taxonomy and trophic affiliation showed a similar response to environmental variability and there was a high degree of association between taxonomic and trophic correlation matrices. Thus, trophic group structure was highly dependent on the taxonomic make-up of a given assemblage. At the basin-level, fish and macroinvertebrate taxa were associated more strongly with environmental variability than the trophic groups, and these results have implications for basin-level studies that use trophic groupings as a metric to assess ecological patterns. Trophic categories may not be a useful ecological measure for studies at large spatial scales.