Consequences of Habitat Fragmentation on Age Structure and Life History in a Tortoise Population1

We studied changes in a population of red‐footed Amazonian tortoises, Geochelone carbonaria, consequent to isolation in an insular forest fragment. Altered age structure, population density, and body growth rate are shown here for the first time to be associated responses. Age structure was strongly biased toward juveniles and growth rates were reduced compared to the mainland. Our data suggest that density‐dependent processes induced by habitat fragmentation changed demography and life history parameters in a scant 16 years.     

Fragment size, pollination efficiency and reproductive success in natural populations of wind-pollinated Polylepis australis (Rosaceae) trees

It is well known that habitat fragmentation is likely to negatively affect the reproductive success of a species. Despite this fact, studies on the effects of fragmentation on reproductive success in combination with effects on natural pollination of wind-pollinated tree species are very rare. In this study, we analyzed the relationships between fragment size, components of pollination efficiency, reproductive success and progeny vigour of the highly fragmented populations of the wind-pollinated treeline species Polylepis australis (Rosaceae) in Argentina. We conducted our study in the high mountains of Córdoba, comparing pollination efficiency and reproduction between four fragment sizes. Most of our results indicate that P. australis is currently insensitive to fragmentation. However, our study revealed also a linear increase in leaf area and biomass of 40-day-old seedlings with increasing fragment size. Inbreeding problems through fragmentation as well as decreased habitat quality in small fragments are discussed as possible causes for the impaired progeny vigour.     

超高效液相色谱与串联四级杆飞行时间质谱仪联用技术结合质谱裂解规律快速分析Alternaria panax中二酮哌嗪类化学成分

【目的】利用超高效液相色谱与串联四级杆飞行时间质谱仪联用技术(ultra-high-performance liquid chromatography-quadrupole time-of-flight tandem mass spectrometry,UPLC-Q-TOF-MS/MS)结合质谱裂解规律分析,靶向分离Alternaria panax发酵液粗提物中次生代谢产物。【方法】用马铃薯葡萄糖(potato dextrose broth,PDB)培养基液体发酵A.panax 14 d,将滤液用乙酸乙酯萃取后减压浓缩得粗提物;基于UPLC-Q-TOF-MS/MS方法(高分辨质谱、分子式与碎片峰等)分析粗提物化学成分及质谱裂解规律;采用半制备高效液相色谱(high-performance liquid chromatography,HPLC)方法进一步分离纯化;结合核磁共振波谱(nuclear magnetic resonance,NMR)和质谱(mass spectrometry,MS)等谱学技术以及与文献数据对照确定化合物结构。【结果】利用UPLC-Q-TOF-MS/MS技术分析出...     

Chlamydial Antiapoptotic Activity Involves Activation of the Raf/MEK/ERK Survival Pathway

Chlamydiae are obligate intracellular bacteria that cause variety of human diseases. Chlamydia-infected host cells are profoundly resistant to apoptosis induced by many different apoptotic stimuli. The inhibition of apoptosis is thought to be an important immune escape mechanism allowing chlamydiae to productively complete their obligate intracellular growth cycle. Infection with chlamydiae can activate the Raf/MEK/ERK pathway. Because the survival pathway can modulate apoptosis, we used MEK-specific inhibitor U0126 and Raf-specific inhibitor GW5074 to examine the role of Raf/MEK/ERK pathway in chlamydial antiapoptotic activity. Apoptosis was induced by staurosporine (STS) and detected by morphology, DNA fragmentation, caspase-3 activation, and poly (ADP-ribose) polymerase cleavage. Inhibition of the pathway sensitized Chlamydia-infected cells to STS-mediated cell apoptosis. The data indicate that chlamydial antiapoptotic activity involves activation of the Raf/MEK/ERK survival pathway.     

气候变化对孑遗植物银杉的潜在分布及生境破碎度的影响

以孑遗植物银杉(Cathaya argyrophylla Chun et Kuang)为研究对象,选取65个地理分布记录和19个生物气候因子(bio1—bio19),利用MaxEnt模型预测四种不同浓度路径下(RCP 2.6、RCP 4.5、RCP 6.0和RCP 8.5),银杉在2050s和2070s两个年代的潜在分布变化,并利用景观指数对气候变化情景下银杉适宜生境空间格局特征转变及生境破碎度变化进行分析。结果表明:在当前气候情景下,银杉适宜生境面积约占研究区面积的14.32%,主要分布于北纬24°—32°、东经105°—114°之间,位于四川盆地东南地区、云贵高原东北地区、南岭西段地区以及浙闽丘陵的北部地区。在未来不同气候情景下,银杉适宜生境变化特征显著,面积呈增加趋势,形状上整体呈四周向中间聚集。气候变化对银杉适宜生境的景观指数影响主要表现在斑块数量增多、斑块密度增加、面积加权平均形状指数变大,对分离度与聚散性影响较小;气候变化对银杉生境破碎化程度的影响表现在破碎化两极现象减弱,总体破碎化程度加剧。研究选取7个景观指数并结合PCA法得到综合的破碎度指数来定量分析银杉适宜生境破碎化程度变化,相比单一指标的定量评价和多个指标的定性分析,更能代表银杉生境的实际破碎化程度。     

Rise in human activities on the mudflats and Brent Geese (Branta bernicla) wintering distribution in relation to Zostera spp. beds: a 30-year study

Human activities may restrict access of wintering birds to their food resources, but habitat destruction and fragmentation may interact with disturbance to reduce carrying capacity. We analysed the abundance and distribution of wintering Brent Geese (Branta bernicla) in a major French wintering site from 1970 to 2000, when they experienced increases in human foreshore activities. We used mixed-effects models to test whether spatial extent of two Zostera species, Z. noltii and Z. marina, influenced the distribution of Brent Geese. The number of geese increased significantly with the area of both Zostera species beds. However, the relationship changed in the period after the increase in human activities. More specifically, fragmentation of the most accessible food resource, Z. noltii, negatively affected Brent Goose distribution. This fragmentation was in turn increased by human activities and reduced by the protection of Z. noltii (by banning human access). This implies that direct disturbance, although not excluded, might not have been the major cause of changes in Brent Goose distribution, but rather the effects of human activities on food resources. Thus, our results show that establishment of resource protection areas are efficient as conservation measures, and they underline the need for studies of impacts of human activities on resources, in addition to disturbance effects.     

Differential and delayed response of two ant species to habitat fragmentation via the introduction of a pine matrix

1. Ants are a ubiquitous and crucial component of Australian Eucalyptus forests, but responses to long‐term habitat fragmentation remain poorly understood. Two ant species were followed across a 21‐year history of pine plantation establishment and maturation in a southeast Australian Eucalyptus forest. 2. At Wog Wog in southeastern Australia, a Native Eucalyptus forest was clear‐cut to make way for plantation establishment and 12 remnant patches of forest were left intact and subsequently surrounded by a pine matrix. Pitfall traps were placed in the continuous native forest, remnant Eucalyptus patches, and the pine matrix between fragments, and were stratified based on proximity to remnant patch edges and habitat type. Two ant species are focused on that represent the only remaining data for the early years of the experiment. 3. While Leptomyrmex erythrocephalus (Fabricius), the rarer of the two species, was not affected by fragmentation in the short term, 21 years after fragmentation, it was less likely to occur in both the mature pine matrix and fragments than in continuous forest controls. Aphaenogaster longiceps (Smith F.) was equally likely to occur in the fragments, continuous forest, and pine matrix early in the experiment but by year 21 post‐fragmentation was less likely to occur in the pine matrix than fragments or controls. 4. Importantly, we only detected negative impacts of fragmentation on ant occurrence as the pine plantation matrix matured and isolated ant populations on fragments. 5. It is concluded that changes in matrix suitability and specific habitat characteristics influence ant persistence in Eucalyptus fragments.     

宁夏黄河流域景观破碎化时空变化特征

基于RS和GIS技术,以土地利用数据为基础,采用有效粒度尺寸对宁夏黄河流域1985年和2010年的景观破碎化进行时空变化分析。结果显示:流域整体的有效粒度尺寸(meff)从1985年的6326.62 km2下降到2010年的2974.32 km2,破碎化程度呈显著加剧变化;从流域内部来看,景观破碎化程度最大的是黄左区间,破碎化程度最小的是苦水河和红柳沟;除引黄区间外,其余分区景观破碎化程度在25年间均有所加剧。特征尺度分析结果显示研究区景观破碎化空间变异分析的合适尺度为4500 m;景观破碎化指数的空间变异结果表明破碎化程度较大的区域面积明显多于破碎化程度弱的区域,景观破碎化空间异质性在25年间表现出明显的上升趋势。在海拔背景条件下,2400 m以下区域的景观破碎化程度较高,2400m以上区域破碎化程度较低,且随海拔的升高有降低的趋势;流域景观破碎化受人为干扰影响强烈,在人为干扰较强的1000—1500 m区段的景观破碎化程度最大;景观破碎化在时间上的变化受人为干扰影响产生的变化最为显著,由自然条件改变产生的影响有限。研究结果可为西北地区景观格局及景观破碎化的研究提供参考,并为区域景观格局优化和土地的有效管理提供依据。     

A dated phylogeny and collection records reveal repeated biome shifts in the African genus Coccinia (Cucurbitaceae)

Background  

Conservatism in climatic tolerance may limit geographic range expansion and should enhance the effects of habitat fragmentation on population subdivision. Here we study the effects of historical climate change, and the associated habitat fragmentation, on diversification in the mostly sub-Saharan cucurbit genus Coccinia, which has 27 species in a broad range of biota from semi-arid habitats to mist forests. Species limits were inferred from morphology, and nuclear and plastid DNA sequence data, using multiple individuals for the widespread species. Climatic tolerances were assessed from the occurrences of 1189 geo-referenced collections and WorldClim variables.     

Early detection of population fragmentation using linkage disequilibrium estimation of effective population size

Population subdivision due to habitat loss and modification, exploitation of wild populations and altered spatial population dynamics is of increasing concern in nature. Detecting population fragmentation is therefore crucial for conservation management. Using computer simulations, we show that a single sample estimator of N _e based on linkage disequilibrium is a highly sensitive and promising indicator of recent population fragmentation and bottlenecks, even with some continued gene flow. For example, fragmentation of a panmictic population of N _e = 1,000 into demes of N _e = 100 can be detected with high probability after a single generation when estimates from this method are compared to prefragmentation estimates, given data for ~20 microsatellite loci in samples of 50 individuals. We consider a range of loci (10–40) and individuals (25–100) typical of current studies of natural populations and show that increasing the number of loci gives nearly the same increase in precision as increasing the number of individuals sampled. We also evaluated effects of incomplete fragmentation and found this N _e-reduction signal is still apparent in the presence of considerable migration (m ~ 0.10–0.25). Single-sample genetic estimates of N _e thus show considerable promise for early detection of population fragmentation and decline.     

DNA Digestion and Chromatin Condensation during Nuclear Death inTetrahymena

DNA fragmentation and nuclear condensation are key features in the regulated cell death of higher animal cells. Nuclear death also occurs as part of a developmentally programmed process during the sexual life cycle of the unicellular organismTetrahymena.We examined the regulation of nuclear death and the relationship between DNA fragmentation and chromatin condensation in this model system. Nuclear death is accompanied by DNA digestion to low-molecular-weight oligonucleosomal-length fragments, in agree- ment with a previous study [17], indicating an endonuclease-like activity typical of apoptosis in higher organisms. Actinomycin D and cycloheximide block DNA digestion as well as nuclear condensation suggesting that nuclear death is under genetic regulation. DNA digestion is completely blocked by aurin, a general nuclease inhibitor. In addition, when DNA fragmentation is blocked, nuclear condensation also fails to occur. Moreover, a kinetic analysis of DNA breakdown, using agarose gels, shows that some DNA digestion occurs before nuclear condensation has taken place. Thus the initiation of DNA digestion may provide conditions necessary for nuclear condensation. Temporary inhibition of nuclear death aborts the death program since after removal of inhibitors cells revert to a vegetative pathway without having eliminated the old or developed the new macronucleus. Zn²⁺and EGTA, both of which inhibit apoptosis in some cell types, fail to prevent nuclear condensation or DNA digestion inTetrahymena,suggesting a requirement here for an endonuclease which is Ca²⁺-independent and Zn²⁺-insensitive. With the TUNEL assay, DNA breakdown is detected exclusively in the condensed macronucleus (and occasional micronuclei identified as degenerating haploid products of meiosis), but not in precondensed macronuclei. These studies show that apoptotic-like DNA fragmentation occurs after condensation of the degenerating macronucleus. However, early DNA digestion may be critical for nuclear condensation and subsequent degeneration.     

Anthropogenic fragmentation may not alter pre‐existing patterns of genetic diversity and differentiation in perennial shrubs

Many plant species have pollination and seed dispersal systems and evolutionary histories that have produced strong genetic structuring. These genetic patterns may be consistent with expectations following recent anthropogenic fragmentation, making it difficult to detect fragmentation effects if no prefragmentation genetic data are available. We used microsatellite markers to investigate whether severe habitat fragmentation may have affected the structure and diversity of populations of the endangered Australian bird‐pollinated shrub Grevillea caleyi R.Br., by comparing current patterns of genetic structure and diversity with those of the closely related G. longifolia R.Br. that has a similar life history but has not experienced anthropogenic fragmentation. Grevillea caleyi and G. longifolia showed similar and substantial population subdivision at all spatial levels (global F′_ST = 0.615 and 0.454; S_p = 0.039 and 0.066), marked isolation by distance and large heterozygous deficiencies. These characteristics suggest long‐term effects of inbreeding in self‐compatible species that have poor seed dispersal, limited connectivity via pollen flow and undergo population bottlenecks because of periodic fires. Highly structured allele size distributions, most notably in G. caleyi, imply historical processes of drift and mutation were important in isolated subpopulations. Genetic diversity did not vary with population size but was lower in more isolated populations for both species. Through this comparison, we reject the hypothesis that anthropogenic fragmentation has impacted substantially on the genetic composition or structure of G. caleyi populations. Our results suggest that highly self‐compatible species with limited dispersal may be relatively resilient to the genetic changes predicted to follow habitat fragmentation.     

基于野外观测检验动物廊道选址模型的准确性——以白头叶猴为例

廊道构建是减少栖息地破碎化负面影响的重要策略之一。目前,已经有许多模型用于动物廊道的选址,而"选址模型是否能准确预测动物迁移的实际发生位置"一直是保护生物学最为关注的问题。最小成本路径模型（LCP）和条件最小成本廊道模型（CMTC）是两种较为常用的廊道选址模型。以白头叶猴（Trachypithecus leucocephalus）为目标物种,分别运用LCP和CMTC模拟生成白头叶猴迁移廊道,将模拟结果与野外观测廊道进行对比,检验两种方法的准确性。结果表明：与野外观测实际廊道相比,LCP模型模拟结果的完全准确率为46.7%,部分准确率为20%,完全不准确率为33.3%;CMTC模型模拟结果的完全准确率为26.7%,其余73.3%为部分准确,无完全不准确的结果;总体上看,CMTC廊道的准确率较LCP高,因而CMTC模型模拟白头叶猴实际迁移廊道位置的准确性优于LCP模型。输入"源"要素类型、阻力面栅格尺度设定、栖息地土地利用类型变化以及动物迁移行为复杂性4个因素是影响该模拟结果准确性的主要原因。     

Consequences of dispersal limitation and habitat fragmentation for the Brazilian heart‐tongued frogs (Phyllodytes spp.)

Poorly known species may be cryptically endangered, especially when they inhabit fragmented and threatened habitats. Heart‐tongued frogs (genus Phyllodytes, family Hylidae, Lophyohylinae) comprise 17 species of poorly known frogs that have obligatory associations with tank bromeliads. The distributions of all species are restricted to a small, extremely fragmented, region of Atlantic Forest in eastern Brazil. We model climate and tank bromeliad distributions to better understand frog distribution limits. Using records from several sources for frogs and bromeliads with climate data from WorldClim, we modelled the distribution of Phyllodytes using maximum entropy. We compared climate and altitude within the distribution and nearby to test how climate may limit distribution. Climate together with bromeliad distributions provided the best model and predicted the smallest suitable area for Phyllodytes that was larger than that occupied, from the state of Paraíba in the north to Rio Grande do Sul in the south. Phyllodytes occurs in lower elevations that are warmer, wetter and less variable than the surrounding regions where it does not occur, and dispersal is apparently limited by the surrounding, inhospitable, region. Dispersal limitation and habitat fragmentation have relegated Phyllodytes to many very small habitat fragments. With many species in this genus being known from a single or few samples, this unfortunate combination of limitation and fragmentation suggests that some or all species of Phyllodytes may be threatened with extinction, especially if habitat fragmentation continues at its present pace in eastern Brazil.     

Whole-genome chromosome distribution during nuclear fragmentation of giant trophoblast cells of Microtus rossiaemeridionalis studied with the use of gonosomal chromatin arrangement

Gonosomal chromatin bodies (GCBs), i.e. blocks of condensed chromatin consisting of heterochromatized region of the sex chromosomes of the field vole M. rossiaemeridionalis, were used as a natural interphase chromosome marker in order to clarify the regularities of GCB rearrangement during nuclear fragmentation of secondary giant trophoblast cells (SGTCs) at the end of their differentiation. Cytophotometrical measurements of DNA content in the nuclei, nuclear fragments and simultaneously in the GCBs were made in the secondary giant SGTCs of field vole M. rossiaemeridionalis. In most cases 1 to 2 GCBs get into the nuclear fragments at different ploidy levels. In the nuclear fragments, GCB DNA content decreased mostly proportionally to DNA content in the whole fragments corresponding to 2c, 4c and 8c. The data obtained demonstrate a regular whole-genome chromosome distribution into nuclear fragments. A possible mechanism of nuclear fragmentation that largely ensures a balanced genome in nuclear fragments is discussed.     

Breeding behaviour, relatedness and sex-investment ratios inLeptothorax tuberum Fabricius

The ant speciesLeptothorax tuberum was shown to be predominantly monogynous. Queens usually mate once only but some nests may have a multiply-mated queen or are partially or serially polygynous. As expected from these results, within nest relatedness between workers and between workers and alate queens was found to be high. Almost fifty percent of nests had no nest queen which may indicate high queen mortality, queens leaving to found new nests or nest fragmentation. Observed female investment frequencies (IF _o ) were not significantly different from those expected on the basis of worker control of sexual production and the relatedness estimates of workers to alate queens and workers to males calculated from isozyme data (IF _E ). These values were not consistent with queen control. There was no evidence for lower IF _o s in queenless nests nor for higher IF _o s in larger nests classified by worker number. When nests were classified by sexual productivity, however, there was a strong rank correlation between productivity and female bias. This is the first study of an ant species to test observed IF against expected IF calculated without inferring between caste relatedness from worker data or pooling of data from different castes.     

Genetic effects of habitat fragmentation and population isolation on Etheostoma raneyi (Percidae)

The use of genetic methods to quantify the effects of anthropogenic habitat fragmentation on population structure has become increasingly common. However, in today’s highly fragmented habitats, researchers have sometimes concluded that populations are currently genetically isolated due to habitat fragmentation without testing the possibility that populations were genetically isolated before European settlement. Etheostoma raneyi is a benthic headwater fish restricted to river drainages in northern Mississippi, USA, that has a suite of adaptive traits that correlate with poor dispersal ability. Aquatic habitat within this area has been extensively modified, primarily by flood-control projects, and populations in headwater streams have possibly become genetically isolated from one another. We used microsatellite markers to quantify genetic structure as well as contemporary and historical gene flow across the range of the species. Results indicated that genetically distinct populations exist in each headwater stream analyzed, current gene flow rates are lower than historical rates, most genetic variation is partitioned among populations, and populations in the Yocona River drainage show lower levels of genetic diversity than populations in the Tallahatchie River drainage and other Etheostoma species. All populations have negative F_IS scores, of which roughly half are significant relative to Hardy–Weinberg expectations, perhaps due to small population sizes. We conclude that anthropogenic habitat alteration and fragmentation has had a profoundly negative impact on the species by isolating E. raneyi within headwater stream reaches. Further research is needed to inform conservation strategies, but populations in the Yocona River drainage are in dire need of management action. Carefully planned human-mediated dispersal and habitat restoration should be explored as management options across the range of the species.     

Cell death during Drosophila melanogaster early oogenesis is mediated through autophagy

Autophagy is a physiological and evolutionarily conserved process maintaining homeostatic functions, such as protein degradation and organelle turnover. Accumulating data provide evidence that autophagy also contributes to cell death under certain circumstances, but how this is achieved is not well known. Herein, we report that autophagy occurs during developmentally-induced cell death in the female germline, observed in the germarium and during middle developmental stages of oogenesis in Drosophila melanogaster. Degenerating germline cells exhibit caspase activation, chromatin condensation, DNA fragmentation and punctate staining of mCherry-DrAtg8a, a novel marker for monitoring autophagy in Drosophila. Genetic inhibition of autophagy, by removing atg1 or atg7 function, results in significant reduction of DNA fragmentation, suggesting that autophagy acts genetically upstream of DNA fragmentation in this tissue. This study provides new insights into the mechanisms that regulate cell death in vivo during development.     

Role of movement,interremnant dispersal and edge effects in determining sensitivity to habitat fragmentation in two forest‐dependent rodents

Abstract Habitat fragmentation and disturbance affect patterns of habitat use, animal movement and spatial behaviour and might have significant effects upon population dynamics and trends, and ultimately population persistence. Previous studies have suggested that the ability to disperse between remnants and a positive or neutral response to edges should be associated with species capable of persisting in remnant habitat. Using both radiotracking and trapping data, movement patterns, dispersal and response to habitat edges of Rattus fuscipes were examined within forests, corridors, remnants and pastures in south‐east Queensland, Australia. Rattus fuscipes has previously been shown to be robust to the effects of habitat fragmentation; however, contrary to expectations, R. fuscipes was found to be sensitive to edges, and no evidence of interremnant dispersal was detected, despite interremnant distances that were substantially smaller than the distances R. fuscipes was found to move in continuous habitat. Using only trapping data, the same factors were examined in relation to Melomys cervinipes, a species sensitive to fragmentation. Melomys cervinipes was found to utilize edge habitat, but no evidence of interremnant dispersal was detected, although the capacity to detect such movement was limited by low abundance in remnants where M. cervinipes was extant, and the species absence from many remnants. Movement patterns, interremnant dispersal capacity, and sensitivity to edges did not prove to be good predictors of these species responses to habitat fragmentation. Alternative explanations, such as population fluctuation and the capacity for rapid population growth in remnants for these two species, and the influence habitat quality has on these parameters should be investigated.