Spatial dispersion of an estuarine benthic faunal community

By means of a box-sampler 20 moderately undisturbed sediment samples were obtained, which were subsampled on board the ship. The fauna in the upper 0–5 cm of the sediments was compared to that in the 5–10 cm layer; almost all species collected in both strata were found in the upper 0–5 cm. About 64% of the individuals and 74% of the biomass were restricted to this upper layer. A sample area of 0.5 m² (depth 0–10 cm) was found to be sufficient to make a quantitative evaluation of the benthic community. The horizontal dispersion of the macrobenthic community was studied using the variance/mean ratio and its dependence on sample size is discussed. The abundant species occurred in patches larger than 0.06 m² and high densities were correlated with aggregation.     

Bacterial diversity,community structure and potential growth rates along an estuarine salinity gradient

Very little is known about growth rates of individual bacterial taxa and how they respond to environmental flux. Here, we characterized bacterial community diversity, structure and the relative abundance of 16S rRNA and 16S rRNA genes (rDNA) using pyrosequencing along the salinity gradient in the Delaware Bay. Indices of diversity, evenness, structure and growth rates of the surface bacterial community significantly varied along the transect, reflecting active mixing between the freshwater and marine ends of the estuary. There was no positive correlation between relative abundances of 16S rRNA and rDNA for the entire bacterial community, suggesting that abundance of bacteria does not necessarily reflect potential growth rate or activity. However, for almost half of the individual taxa, 16S rRNA positively correlated with rDNA, suggesting that activity did follow abundance in these cases. The positive relationship between 16S rRNA and rDNA was less in the whole water community than for free-living taxa, indicating that the two communities differed in activity. The 16S rRNA:rDNA ratios of some typically marine taxa reflected differences in light, nutrient concentrations and other environmental factors along the estuarine gradient. The ratios of individual freshwater taxa declined as salinity increased, whereas the 16S rRNA:rDNA ratios of only some typical marine bacteria increased as salinity increased. These data suggest that physical and other bottom-up factors differentially affect growth rates, but not necessarily abundance of individual taxa in this highly variable environment.     

Macrofaunal community bioturbation along an estuarine gradient

A multidisciplinary study of the impact of bioturbation on sediment dynamics has been underway for some time at the Plymouth Marine Laboratory. The current programme has been founded upon the careful selection of six sites in the River Tamar, representative of important combinations of physical and biological variables. The paper presents preliminary results illustrating the contrasting importance of the speciesNereis diversicolor andNephtys hombergi as agents of bioturbation, given their different distributions across the six sites. Thus bioirrigation byN. diversicolor increases up the estuary and is greatest in the region of high suspended bed-load due to tidal pumping, where the consequences for chemical exchange processes between sediments and the water column may be most important. The sediment mixing effects ofN. hombergi are likely to be greater towards the seaward end of the estuary but ultimately the particular sediment types and the macrofaunal communities they support dictate the level of bioturbation in ways that do not necessarily relate to simple axial gradients along the estuary.     

Stability in an annually defaunated estuarine soft-bottom community

Summary The concept of biological stability is so complex that at least six different meanings have been ascribed to it. We propose that one definition, the ability of a system once perturbed to return to its previous state be utilized as a working definition. Using quantitative data collected monthly from a soft-bottom community that undergoes an annual natural catastrophic defaunation coupled with a recently developed analytical technique, we demonstrate the feasability of a working definition and show the existence of stability in the soft-bottom community. The utility of a working definition of stability in the evaluation of disturbance is discussed.A portion of a dissertation (SLS) submitted in partial fulfillment of the Ph.D. degree, Department of Biology, University of South Florida, Tampa, Florida     

In situ study of the effect of oyster biomass on benthic metabolic exchange rates

Oxygen consumption and dissolved nitrogen fluxes at the water-sediment interface of an oyster-bed were measured in situ using transparent enclosures inserted on undisturbed sediment. Experiments were performed in summer, under dark and light conditions, with various densities of the oyster Crassostrea gigas (0–150 animals m ^{– 2}). The influence of oyster biomass on oxygen and ammonia exchange rates was similar in both lighting conditions. Oxygen consumption increased with increasing biomass, though not at the level of prediction for the highest biomasses, suggesting a depressed respiration rate. Ammonia release never matched the rates predicted by adding sediment efflux to oyster excretion, when biomass exceeded 100 g DW m ^{– 2}. The coupling between oxygen consumption and ammonia release (O : N ratio) was thus influenced by oyster biomass. Stabilization of nitrogen release was related to enhanced nitrification in the presence of oyster and/or sediment uptake of ammonia against the molecular gradient. Urea release was erratic but appeared uninfluenced by oyster biomass. Fluxes of oxygen and of each nitrogen compound displayed thus a specific response to modifications of the oyster biomass. Both the organisms and the sediment are involved in regulation processes of metabolic exchange rates at the water-sediment interface.     

Predation, production and the organization of an estuarine copepod community

The copepod community of the estuaries near Beaufort, NC underwenta consistent seasonal succession from a spring assemblage dominatedby the medium-sized copepod Acartia tonsa (1 mm) to a summer—fallassemblage dominated by the small-bodied copepods Parvocalanuscrizsrirostris and Oithona colcarva (both 0.5 mm). However,in enclosure experiments during this period, A. tonsa dominatedthe community, due to higher growth rates and its predationon the nauplii of other species. Nutrient additions enhancedthe dominance by A. tonsa. The decline in abundance of A. tonsain the estuary was associated with increased abundance of planktivorousanchovies and silversides. In other enclosure experiments, planktivorousfish eliminated A. tonsa and other large copepods, althoughthey persisted in enclosures lacking fish. I conclude that predationby size-selective planktivorous fish prevents dominance by A.tonsa during summer—fall. ¹Present address: Institute of Marine Sciences, University ofNorth Carolina, 3407 Arendell Street, Morehead City, NC 28557,USA     

Interactive effects of temperature and predation on an estuarine zooplankton community

The winter planktonic copepod community of the estuaries near Beaufort N.C. underwent a consistent transition from dominance by Acartia tonsa Dana to dominance by Centropages spp., which was associated with unpredictable decreases in water temperature and increases in abundance of predatory mysids. Centropages subsequently remained dominant until spring. Experimental manipulations of water temperature and mysid abundance in enclosures showed that copepod species composition was determined by an interaction of direct temperature effects with predatory interactions among copepods and mysids. Low temperatures stimulated recruitment of Centropages spp. and inhibited recruitment of Acartia tonsa. Temperature decreases also apparently stimulated migration of mysids into the study area. While A. tonsa was dominant, selective predation by mysids reduced the relative abundance of A. tonsa, but after Centropages became dominant mysid predation had no effect on copepod species composition. Predation by Centropages on the nauplii of other species probably contributed to its persistent dominance in the estuary. Rising temperatures in the spring favored recruitment of Acartia tonsa and inhibited Centropages recruitment. Selective predation by fish entering the estuary in spring may have contributed to the decline in abundance of Centropages spp. and mysids.     

Diatom-derived carbohydrates as factors affecting bacterial community composition in estuarine sediments

Microphytobenthic biofilms in estuaries, dominated by epipelic diatoms, are sites of high primary productivity. These diatoms exude large quantities of extracellular polymeric substances (EPS) comprising polysaccharides and glycoproteins, providing a substantial pool of organic carbon available to heterotrophs within the sediment. In this study, sediment slurry microcosms were enriched with either colloidal carbohydrates or colloidal EPS (cEPS) or left unamended. Over 10 days, the fate of these carbohydrates and changes in beta-glucosidase activity were monitored. Terminal restriction fragment length polymorphism (T-RFLP), DNA sequencing, and quantitative PCR (Q-PCR) analysis of 16S rRNA sequences were used to determine whether sediment bacterial communities exhibited compositional shifts in response to the different available carbon sources. Initial heterotrophic activity led to reductions in carbohydrate concentrations in all three microcosms from day 0 to day 2, with some increases in beta-glucosidase activity. During this period, treatment-specific shifts in bacterial community composition were not observed. However, by days 4 and 10, the bacterial community in the cEPS-enriched sediment diverged from those in colloid-enriched and unamended sediments, with Q-PCR analysis showing elevated bacterial numbers in the cEPS-enriched sediment at day 4. Community shifts were attributed to changes in cEPS concentrations and increased beta-glucosidase activity. T-RFLP and sequencing analyses suggested that this shift was not due to a total community response but rather to large increases in the relative abundance of members of the gamma-proteobacteria, particularly Acinetobacter-related bacteria. These experiments suggest that taxon- and substrate-specific responses within the bacterial community are involved in the degradation of diatom-derived extracellular carbohydrates.     

Degradation and recovery of an Arctic benthic community under organic enrichment

Fast development of mariculture in the world leads to increasing of the load on natural habitats, especially due to organic enrichment. There are a few investigations concerning the effect of additional organic loading on the Arctic benthic communities. The main goal of our research was to ascertain the impact of mussel farm on the benthic community in the White Sea and its following recovery after mussel farm removal. We performed annual observations from 1988 to 2011. During the mussel farm functioning, two stages of organic enrichment impact on community structure were recorded: in the first 2 years, diversity and proportion of deposit feeders increased but later all studied characteristics of the benthic community decreased significantly. After the mussel farm removal, the benthic community started to restore and we distinguished several stages of recovery succession. Native structure of benthic community began to recover 8 years after organic loading had ceased, when selective deposit feeding bivalves Portlandia arctica Gray appeared in the benthos. 4–6 years later it became the only dominating species in the studied benthic community. Therefore, in the White Sea, native structure recovery of the Arctic benthic community after the severe disturbance took about 15 years.     

Stage-structured interactions between seasonal and permanent residents of an estuarine nekton community

Estuarine assemblages of fishes and natant decapod crustaceans (i.e. nekton) comprise both permanent resident species and juveniles of coastal marine species that use estuaries primarily as nurseries. In an attempt to understand how the young of marine species successfully invade communities of permanent estuarine residents we studied potential interactions between two of the most abundant decapod crustaceans in nekton assemblages of the southeastern United States. Three years of quantitative samples from an intertidal marsh on Sapelo Island, Georgia showed that densities of the resident daggerblade grass shrimp Palaemonetes pugio were reduced during the time that juvenile white shrimp Penaeus setiferus used the estuary as a nursery. Results of a field enclosure experiment showed that white shrimp had no significant lethal or sublethal effects on adult grass shrimp. However, they did reduce survival of both juvenile and larval grass shrimp in laboratory experiments, suggesting the potential importance of a stage-dependent predatorprey interaction between the two shrimp species. The mortality rate of young grass shrimp in the presence of white shrimp was unaffected by grass shrimp density, but larvae (2.6–3.0 mm) suffered higher mortalities than did juveniles (5.0–15.0 mm). We suggest that the vulnerability of grass shrimp to predation by white shrimp is related to their molting cycle. The window of vulnerability opens more often for younger grass shrimp because they molt more frequently. When combined with losses due to other predators and competitors, the impact of early white shrimp cohorts on grass shrimp larvae and juveniles may prevent the resident species from maintaining its population at high densities, thereby freeing resources in the nursery for subsequent cohorts of juvenile white shrimp.     

Paleoecology of benthic community replacement

The literature of community paleoecology is filled with examples in which long-term environmentally-controlled faunal transitions are misidentified as forms of ecologic succession. This has obscured a fundamental community-level process - community replacement - involving gradual to abrupt substitution of one benthic community for another as a result of subtle to sharp changes in habitats over subevolutionary time. In gradually changing environments, replacement takes place through conformational reorganization of species-abundance distributions within established communities, yielding sequences of slightly different fossil associations. Environments that change very rapidly drastically feature a different type of community replacement involving species turnover, wherein environmental tolerance limits of community members are closely approached or exceeded. Paleoecologists should be alert to the strong likelihood that many temporal transitions involving autochthonous fossil associations are, in fact, community replacement sequences.     

Review and evaluation of estuarine biotic indices to assess benthic condition

Recently there has been a growing interest and need for sound and robust ecological indices to evaluate ecosystem status and condition, mainly under the scope of the Water Framework Directive implementation. Although the conceptual basis for each index may rely on different assumptions and parameters, they share a common goal: to provide a useful tool that can be used in assessing the system's health and that could be applied in decision making. This paper focuses mainly on benthic community-based, biotic indices. We supply a general overview of several indices premises and assumptions as well as their main advantages and disadvantages. Furthermore, an illustrative example is provided of a straightforward application of benthic index of biotic integrity and benthic condition index. As a reference, their performance is compared to the Portuguese-benthic assessment tool. Limitations of the tested indices are discussed in context of the Mondego estuary (Portugal) case study.     

The benthic macrofauna along the estuarine gradient of the Schelde estuary

The intertidal benthic macrofauna of the Schelde estuary (The Netherlands and Belgium) was sampled in late autumn of 1990 at 50 stations along the whole salinity gradient (between Vlissingen and Dendermonde), including the freshwater tidal part. All stations were situated in sheltered areas with a relatively muddy sediment. Species richness, diversity and total biomass of the benthic macrofauna decreased along the salinity gradient from Vlissingen to Dendermonde, while total density showed no clear trend. Especially the oligohaline and freshwater tidal part of the Schelde estuary was characterized by a very impoverished benthic community, composed only of Oligochaeta. No other species (freshwater, marine or brackish) was observed in this part of the estuary. The marine part had a more diverse macrozoobenthos structure than that of the brackish part. Species found only in the marine zone areCerastoderma edule, Tharyx marioni, Eteone longa, Nephtys hombergii andCapitella capitata. In the brackish part of the estuary,Corophium volutator was a typical, dominant species. However, a lot of the dominant species were common in both the marine and brackish part of the Schelde estuary (e.g. Heteromastus filiformis, Pygospio elegans, Nereis diversicolor, Macoma balthica). The observed gradient in species composition and dominance is compared with some other European estuaries. The marine and brackish part of the Schelde estuary is quite similar to other european estuaries. The freshwater tidal part, however, was more impoverished.     

Effects of small-scale trawling on benthic communities of estuarine vegetated and non-vegetated habitats

The pink prawn Farfantepenaeus paulensis is one of the most valuable fishery resources in the southwest Atlantic. It is exploited along the inner shelf and inside estuarine nursery grounds. Inside the nursery grounds, mainly artisanal fisheries are responsible for the capture of pink prawn juveniles. In this study, we experimentally assessed the impact of a light mini trawl, a gear extensively used for the capture of estuarine prawn along the southeast and south coast of Brazil. We simulated a single impact (represented by three consecutive trawling runs) on vegetated and non-vegetated bottom. Then we monitored changes in sediment properties and the response of the benthic fauna at the trawling and control sites at a logarithmic temporal scale in order to determine the initial impact and the recovery rates. Meiofauna and macrofauna, both numerically dominated by the ostracod Cyprideis multidentata, were significantly more diverse and abundant inside the submerged algal beds than in non-vegetated areas. In the vegetated areas, the only change caused by the mini trawl was a significant decrease in the percentages of fine sediments (silt+clay). By contrast, in the non-vegetated areas, the mini trawl caused a significant decrease of the total meiofauna, mainly due to lower nematode and C. multidentata abundances. Our results show that the mini trawl does not produce a loss of benthic diversity and causes minimal damage to the estuarine benthos. The absence of a general faunal response, as well as the absence of significant changes in sediment properties of the non-vegetated areas suggests that meiofauna may be resuspended rather than killed during trawling. The present study highlights the need for basic studies on gear impact and environmental health of nursery grounds. Otherwise, management of small-scale fisheries will continue to be based on evidence from large-scale fisheries.     

Influence of an oyster reef on development of the microbial heterotrophic community of an estuarine biofilm

We characterized microbial biofilm communities developed over two very closely located but distinct benthic habitats in the Pensacola Bay estuary using two complementary cultivation-independent molecular techniques. Biofilms were grown for 7 days on glass slides held in racks 10 to 15 cm over an oyster reef and an adjacent muddy sand bottom. Total biomass and optical densities of dried biofilms showed dramatic differences for oyster reef versus non-oyster reef biofilms. This study assessed whether the observed spatial variation was reflected in the heterotrophic prokaryotic species composition. Genomic biofilm DNA from both locations was isolated and served as a template to amplify 16S rRNA genes with universal eubacterial primers. Fluorescently labeled PCR products were analyzed by terminal restriction fragment length polymorphism, creating a genetic fingerprint of the composition of the microbial communities. Unlabeled PCR products were cloned in order to construct a clone library of 16S rRNA genes. Amplified ribosomal DNA restriction analysis was used to screen and define ribotypes. Partial sequences from unique ribotypes were compared with existing database entries to identify species and to construct phylogenetic trees representative of community structures. A pronounced difference in species richness and evenness was observed at the two sites. The biofilm community structure from the oyster reef setting had greater evenness and species richness than the one from the muddy sand bottom. The vast majority of the bacteria in the oyster reef biofilm were related to members of the gamma- and delta-subdivisions of Proteobacteria, the Cytophaga-Flavobacterium -Bacteroides cluster, and the phyla Planctomyces and Holophaga-Acidobacterium. The same groups were also present in the biofilm harvested at the muddy sand bottom, with the difference that nearly half of the community consisted of representatives of the Planctomyces phylum. Total species richness was estimated to be 417 for the oyster reef and 60 for the muddy sand bottom, with 10.5% of the total unique species identified being shared between habitats. The results suggest dramatic differences in habitat-specific microbial diversity that have implications for overall microbial diversity within estuaries.     

Responses of benthic community metabolism to abiotic factors in a mountain river in southern Poland

Seasonal and longitudinal metabolic trends in benthic communities were studied in the five orders of a natural mountain river (the Stradomka) in southern Poland. The method of oxygen change of rocky substrata in chambers was applied. Metabolic data were compared with abiotic (light regime, channel geomorphology and stream hydrology), and water chemical variables. A tendency of downstream increase in gross production and community respiration was observed between 1st and 4th stream orders. The highest values of GP (0.94 g C m^-2 24 h ^-1) and CR (1.12 g C m^-2 24 h ^-1) were observed in the middle Stradomka course (3–4 orders) in spring. A distinct negative NDM (heterotrophy) of the benthic community was measured in autumn and spring. During winter NDM was almost constant and oscillated around zero. The P/R ratio changed according to season and fluctuated between heterotrophy (P/R < 1) and autotrophy (P/R > 1). In general, heterotrophy prevailed in the study system (except 5th order). A marked shift in P/R between 4th and 5th stream orders confirms the prediction included in the RCC. Water temperature and PAR accounted for 56% in GP variability, whereas CR and NDM were not related to these variables. The combined variables (PAR and PO₄–P) attributed to 69% in GP variability. The set of chemical factors was less related to Stradomka metabolic data. These results suggest that metabolic processes in this mountain river remarkably depend on physical variables (solar radiation, altitude, water temperature and conductivity). Metabolic parameters were similar to other geographical mountain systems. This revised version was published online in July 2006 with corrections to the Cover Date.     

Dredging impact on the benthic community of an unaltered inlet in southern Spain

The impact of dredging on macrobenthic communities was studied in an unaltered zone, the Getares inlet of Algeciras Bay (SW Spain). The data obtained before, during and after dredging in a time series spanning 5 years revealed the re-establishment of directly affected communities and of physicochemical substrate characteristics within 1 month of the end of dredging, although 2 years later there was a confusing biological impoverishment of the whole inlet. After 4 years, there was a high degree of population re-establishment, both on the bottoms directly affected by the works and on neighbouring areas, that was partly due to the hydrodynamic conditions. Before this type of activity is undertaken, each case should be studied regarding viability, the environmental medium where it will take place, the best time of year, and the type of dredging to be used.Communicated by H.-D. Franke     

Effects of periodic hypoxia on mortality, feeding and predation in an estuarine epifaunal community

The York River Estuary, a tributary of the Chesapeake Bay, USA, experiences periodic low oxygen stress (hypoxia), yet epifaunal species form dense communities there. We studied hypoxia tolerance of common epifaunal species in the York River by exposing sessile and mobile epifauna to high and low oxygen concentrations in laboratory aquaria. Mortality in hypoxia varied among species, ranging from 0% to 100%, with trends of decreased tolerance by mobile species relative to sessile species. While most species tested experienced some mortality after being exposed to hypoxia (at 1 mg O(2)/l or 0.5 mg O(2)/l) for 5 days, many species had a median lethal time (LT(50)) in hypoxia greater than 1 week (3 of 6 species at 1 mg O(2)/l and 6 of 14 species at 0.5 mg O(2)/l), the maximum duration of typical hypoxic episodes in the York River, suggesting that hypoxia may cause little mortality for some species in this system. However, hypoxia had sub-lethal effects on behavior in all species tested. Epifaunal animals responded to hypoxia with behaviors that moved them higher in the water column or by entering resting states until hypoxia passed. Feeding and predation by a variety of taxa (the hydroid Obelia bicuspidata, the mud crab Neopanope sayi, juvenile blue crabs Callinectes sapidus, the flatworm Stylochus ellipticus, and the nudibranch Doridella leucolena) decreased during hypoxia, despite varying mortality responses to low oxygen stress, suggesting that short hypoxic episodes may create predation refuges for prey species. At least one highly tolerant species (O. bicuspidata) showed substantially decreased growth in hypoxia. Although relatively high tolerance of hypoxia by many estuarine epifaunal species limits serious disturbance during brief hypoxic episodes, hypoxia's greatest impact on York River epifaunal communities might be through its indirect effects on behavior and predation.