Biotic factors determine ecosystem processes in environments with different hydrological regimes

1. The interest in understanding ecosystem functioning has grown in recent years due to the effects of species loss on ecosystem processes. Even though biotic and abiotic factors control ecosystem processes, their relative influence may vary according to ecosystem dynamics. In flood and coastal plains, these dynamics are mainly represented by flood pulses and hydroregime, respectively. The objective of this study was to investigate the importance of abiotic and biotic factors for the ecosystem processes represented by zooplankton secondary production (SP), biomass (ZB), and resource use efficiency (RUE) in lentic waterbodies subjected to different hydrological regimes. We hypothesised that abiotic factors would more strongly determine the ecosystem processes in temporary waterbodies and floodplain lakes, given their greater susceptibility to environmental changes. Biotic factors would be more relevant in coastal lagoons due to their greater temporal stability.
2. Sampling was undertaken quarterly over 1 year in eight coastal lagoons, 10 temporary ponds and five floodplain lakes. The environments were characterised in relation to limnological variables, and zooplankton functional divergence, functional dispersion (FDis), functional evenness, functional richness, and taxonomic richness were measured. Analysis of variance (ANOVA) was used to verify seasonal changes in SP, ZB, RUE, functional diversity, richness, and abiotic factors. Linear mixed models were used to determine which abiotic and biotic factors were the most important for ZB, SP, and RUE.
3. In the coastal lagoons, RUE differed over time. In the temporary ponds and floodplain lakes, no seasonal significant differences were observed for any of the zooplankton production variables. The linear mixed model analyses showed that models composed mainly of biotic factors were better fitted to the production variables. For coastal lagoons, phytoplankton density affected ZB, SP, and RUE increasing them by 9.9 mg DW/m³, 12.4 mg DW/m³, and 1.23, respectively. For temporary ponds, FDis lowered ZB by 6.9 mg DW/m³ and taxonomic richness increased SP and RUE by 14.2 mg DW/m³ and 1.17, respectively. For floodplain lakes, FDis lowered ZB it by 9.9 mg DW/m³ and functional divergence lowered RUE by 0.81.
4. The present study demonstrates that biotic factors are the main determinants of ecosystem processes in neotropical lentic waterbodies, irrespective of their annual hydrological regimes. Complementarity effects and high functional diversity are more important in more stable environments, whereas redundancy and low functional diversity prevail in environments subject to more frequent environmental changes. Biotic factors play a major role in ensuring the functioning of aquatic ecosystems and indicate the important role of biodiversity in enabling ecosystem states to be maintained after disturbances and to prevent changes in ecosystem processes.

     

Salinisation reduces biodiversity in neighbouring freshwater patches in experimental metacommunities

1. Aquatic ecosystems are biodiversity hot spots across many landscapes; therefore, the degradation of these habitats can lead to decreases in biodiversity across multiple scales. Salinisation is a global issue that threatens freshwater ecosystems by reducing water quality and local biodiversity. The effects of salinity on local processes have been studied extensively; however, the effects of salinisation or similar environmental stressors within a metacommunity (a dispersal network of several distinct communities) have not been explored.
2. We tested how the spatial heterogeneity and the environmental contrast between freshwater and saline habitat patches influenced cladoceran biodiversity and species composition at local and regional scales in a metacommunity mesocosm experiment. We defined spatial heterogeneity as the proportion of freshwater to saltwater patches within the metacommunity, ranging from a freshwater-dominated metacommunity to a saltwater-dominated metacommunity. Environmental contrast was defined as the environmental distance between habitat patches along the salinity gradient in which low-contrast metacommunities consisted of freshwater and low-salinity patches and high-contrast metacommunities consisted of freshwater and high-salinity patches.
3. We hypothesised that the α-richness of freshwater patches and metacommunity γ-richness would decrease as freshwater patches became less abundant along the spatial heterogeneity gradient in both low- and high-contrast metacommunities, because there would be fewer freshwater patches that could serve as source populations for declining populations. We hypothesised that low-contrast metacommunities would support more species across the spatial heterogeneity gradient than high-contrast metacommunities, because, via dispersal, low-salinity patches can support halotolerant freshwater species that can mitigate population declines in neighbouring freshwater patches, whereas` high-salinity patches will mostly support halophilic species, providing fewer potential colonisers to freshwater patches.
4. We found that α-richness of freshwater mesocosms and metacommunity γ-richness declined in saline-dominated metacommunities regardless of the environmental contrast between the freshwater and saline mesocosms. We found that environmental contrast influenced freshwater and saline community composition in low-contrast metacommunities by increasing the abundances of species that could tolerate low-salinity environments through dispersal, whereas freshwater and high-salinity communities showed limited interactions through dispersal.
5. Freshwater mesocosms had a disproportionate effect on the local and regional biodiversity in these experimental metacommunities, indicating that habitat identity may be more important than habitat diversity for maintaining biodiversity in some metacommunities. This study further emphasises the importance in maintaining multiple species-rich habitat patches across landscapes, particularly those experiencing landscape-wide habitat degradation.

     

The impacts of invasive ecosystem engineers in freshwaters: A review

1. Invasive species are a key stressor in freshwater ecosystems. When these species are also ecosystem engineers, their impacts are exacerbated because they modulate resource availability for a wide range of other species. The aim of this review is to synthesise existing knowledge of the impacts of invasive ecosystem engineers in freshwaters and identify knowledge gaps requiring further research.
2. The four questions explored in this review are: (1) What are the trends in research into invasive ecosystem engineers? (2) What are common negative effects of invasive ecosystem engineers in freshwater? (3) Do all impacts of invasive ecosystem engineers have negative consequences for biodiversity? (4) What happens when multiple ecosystem engineers interact? Four literature searches in Web of Science have been used to identify articles for the review and to estimate relative research effort between terrestrial, marine and freshwater ecosystems.
3. The number of research articles focusing on ecosystem engineers across all ecosystem types is increasing. Despite well-known examples of ecosystem engineer species in freshwaters (e.g. beaver), more research has focussed on terrestrial environments and invasive species.
4. The effects of invasive ecosystem engineers in freshwater systems are varied and often context dependent. Their effects on biodiversity or native ecosystem engineers are often shown to be negative; however, not all effects associated with these species are deleterious to native species. For instance, some invasive ecosystem engineers support native species through the provision of food or refuges.
5. Although freshwater ecosystems are often influenced by multiple species of ecosystem engineers (including native, invasive or both), little is known about interactions between these species or the combined effects of multiple ecosystem engineers. More research is also needed that relates the results of laboratory experiments to the field and develops methods for measuring factors that govern the impact of engineers on ecosystems. Understanding the spatial variability of the impacts of invasive ecosystem engineers as well as their interaction with anthropogenic stressors (e.g. hydrologic modification) is also necessary.
6. The lag in research surrounding invasive ecosystem engineers in freshwater compared to other biomes is concerning, as freshwater ecosystems support biodiversity disproportionate to the area they occupy. Creating predictive models of the impacts of freshwater ecosystem engineers would help anticipate the effects of invasive ecosystem engineers in freshwater and add to the broader understanding of their effects in other biomes.

     

Fragmentation promotes the role of dispersal in determining 10 intermittent headwater stream metacommunities

1. Dispersal, defined as the movement of individuals among local communities in a landscape, is a central regional determinant of metacommunity dynamics in ecosystems. Whereas both natural and anthropogenic ecosystem fragmentations can limit dispersal, previous attempts to measure such limitations have faced considerable context dependency, due to a combination of spatial extent and associated environmental variability, the wide range of dispersal modes, and abilities of organisms or variation in network topologies. Therefore, the role dispersal plays compared to local environmental filtering in explaining metacommunity dynamics remains unclear in fragmented dendritic ecosystems.
2. We quantified α- and β-diversity components of invertebrate metacommunities across 10 fragmented headwater stream networks and tested the hypothesis that dispersal is the primary determinant of biodiversity organisation in these dynamic and spatially constrained ecosystems.
3. Alpha-diversity was much lower in intermittent than perennial reaches, even long after rewetting, indicating an overwhelming effect of drying including a legacy effect on local communities.
4. Beta-diversity was never correlated with environmental distances but predominantly explained by spatial distances accounting for river network fragmentation. The nestedness proportion of β-diversity was considerable and reflected compositional differences where communities from intermittent reaches were subsets of perennial reaches.
5. Altogether, these results indicate dispersal as the primary process shaping metacommunity dynamics in these 10 headwater stream networks, where local communities recurrently undergo extinction and recolonisation events. This challenges previous conceptual views that local environment filtering is the main driver of headwater stream metacommunities.
6. As river networks become increasingly fragmented due to global change, our results suggest that some freshwater ecosystems currently driven by local environment filtering could gradually become dispersal-limited. In this perspective, shifts from perennial to intermittent flow regimes represent ecological thresholds that should not be crossed to avoid jeopardising river biodiversity, functional integrity, and the ecosystem services they provide to society.

     

Combined impacts of warming and salinisation on trophic interactions and mortality of a specialist ephemeral wetland predator

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Biodiversity of traits and species both show weak responses to hydromorphological alteration in lowland river macroinvertebrates

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Perspectives for ecosystem management based on ecosystem resilience and ecological thresholds against multiple and stochastic disturbances

Ecosystem resilience is the inherent ability to absorb various disturbances and reorganize while undergoing state changes to maintain critical functions. When ecosystem resilience is sufficiently degraded by disturbances, ecosystem is exposed at high risk of shifting from a desirable state to an undesirable state. Ecological thresholds represent the points where even small changes in environmental conditions associated with disturbances lead to switch between ecosystem states. There is a growing body of empirical evidence for such state transitions caused by anthropogenic disturbances in a variety of ecosystems. However, fewer studies addressed the interaction of anthropogenic and natural disturbances that often force an ecosystem to cross a threshold which an anthropogenic disturbance or a natural disturbance alone would not have achieved. This fact highlights how little is known about ecosystem dynamics under uncertainties around multiple and stochastic disturbances. Here, we present two perspectives for providing a predictive scientific basis to the management and conservation of ecosystems against multiple and stochastic disturbances. The first is management of predictable anthropogenic disturbances to maintain a sufficient level of biodiversity for ensuring ecosystem resilience (i.e., resilience-based management). Several biological diversity elements appear to confer ecosystem resilience, such as functional redundancy, response diversity, a dominant species, a foundation species, or a keystone species. The greatest research challenge is to identify key elements of biodiversity conferring ecosystem resilience for each context and to examine how we can manage and conserve them. The second is the identification of ecological thresholds along existing or experimental disturbance gradients. This will facilitate the development of indicators of proximity to thresholds as well as the understanding of threshold mechanisms. The implementation of forewarning indicators will be critical particularly when resilience-based management fails. The ability to detect an ecological threshold along disturbance gradients should therefore be essential to establish a backstop for preventing the threshold from being crossed. These perspectives can take us beyond simply invoking the precautionary principle of conserving biodiversity to a predictive science that informs practical solutions to cope with uncertainties and ecological surprises in a changing world.     

Community isolation drives lower fish biomass and species richness,but higher functional evenness,in a river metacommunity

1. The flow of individuals among communities and their interactions with local environmental filters are increasingly recognised as determinants of biodiversity patterns in riverine ecosystems. Both incoming dispersers and local conditions are expected to systematically change along connectivity gradients from headwaters to downstream communities. However, the interplay between isolation-centrality gradients and environmental conditions as determinants of biodiversity structure and function has seldom been considered.
2. Here, we represented the dendritic structure of the Negro River basin riverscape (Uruguay) in a directed graph quantifying the isolation-centrality of each river section and evaluated the direct and indirect pathways by which riverscape structure and environmental local drivers determine fish community assembly.
3. Fish communities (n = 58) were sampled following a stratified sampling design that properly represents this isolation-centrality connectivity gradient through the riverscape. In each community, fish abundance, biomass, richness, and functional diversity were estimated, and the direct and indirect hypothesised connections among them were evaluated with structural equation models.
4. We showed that the range of isolation among river sections determines a 2-fold, 5-fold, and 25-fold variation in total fish richness, abundance, and biomass, respectively. Additionally, isolation-centrality was positively associated with local temperature and conductivity, while negatively related to local depth. These variables and taxonomic richness accounted for most of the variation in total fish biomass (81%) herein used as measurement of ecosystem function. Local fish abundance was negatively and positively associated with functional evenness and taxonomic richness, respectively. Furthermore, once the effect of isolation on biomass and richness was accounted for, an effect of diversity on biomass became evident.
5. Our results provide empirical evidence for the role of riverscape structure on taxonomic and functional diversity, biomass, and the relationship between biodiversity and ecosystem function. We emphasise that in the understanding of river biodiversity and its management, local determinants should not be considered without attention to metacommunity processes.

     

Responses of seagrass to anthropogenic and natural disturbances do not equally translate to its consumers

Coastal communities are under threat from many and often co‐occurring local (e.g., pollution, eutrophication) and global stressors (e.g., climate change), yet understanding the interactive and cumulative impacts of multiple stressors in ecosystem function is far from being accomplished. Ecological redundancy may be key for ecosystem resilience, but there are still many gaps in our understanding of interspecific differences within a functional group, particularly regarding response diversity, that is, whether members of a functional group respond equally or differently to anthropogenic stressors. Herbivores are critical in determining plant community structure and the transfer of energy up the food web. Human disturbances may alter the ecological role of herbivory by modifying the defense strategies of plants and thus the feeding patterns and performance of herbivores. We conducted a suite of experiments to examine the independent and interactive effects of anthropogenic (nutrient and CO₂ additions) and natural (simulated herbivory) disturbances on a seagrass and its interaction with two common generalist consumers to understand how multiple disturbances can impact both a foundation species and a key ecological function (herbivory) and to assess the potential existence of response diversity to anthropogenic and natural changes in these systems. While all three disturbances modified seagrass defense traits, there were contrasting responses of herbivores to such plant changes. Both CO₂ and nutrient additions influenced herbivore feeding behavior, yet while sea urchins preferred nutrient‐enriched seagrass tissue (regardless of other experimental treatments), isopods were deterred by these same plant tissues. In contrast, carbon enrichment deterred sea urchins and attracted isopods, while simulated herbivory only influenced isopod feeding choice. These contrasting responses of herbivores to disturbance‐induced changes in seagrass help to better understand the ecological functioning of seagrass ecosystems in the face of human disturbances and may have important implications regarding the resilience and conservation of these threatened ecosystems.     

Decadal‐scale regional changes in Canadian freshwater zooplankton: the likely consequence of complex interactions among multiple anthropogenic stressors

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Ant community composition and functional traits in new grassland strips within agricultural landscapes

1. Ongoing intensification and fragmentation of European agricultural landscapes dramatically reduce biodiversity and associated functions. Enhancing perennial noncrop areas holds great potential to support ecosystem services such as ant‐mediated pest control.
2. To study the potential of newly established grassland strips to enhance ant diversity and associated functions, we used hand collection data and predation experiments to investigate differences in (a) ant community composition and (b) biocontrol‐related functional traits, and (c) natural pest control across habitats in cereal fields, old grasslands, and new grassland transects of three years of age.
3. Ant species diversity was similar between new and old grasslands, but significantly higher in new grasslands than in surrounding cereal fields. Contrary, ant community composition of new grasslands was more similar to cereal fields and distinct from the species pool of old grasslands. The functional trait space covered by the ant communities showed the same distribution between old and new grasslands. Pest control did not differ significantly between habitat types and therefore could not be linked to the prevalence of functional ant traits related to biocontrol services in new grasslands.
4. Our findings not only show trends of convergence between old and new grasslands, but also indicate that enhancing ant diversity through new grasslands takes longer than three years to provide comparable biodiversity and functionality.
5. Synthesis and applications: Newly established grasslands can increase ant species richness and abundance and provide a consistent amount of biocontrol services in agroecosystems. However, three years after their establishment, new grasslands were still dominated by common agrobiont ant species and lacked habitat specialists present in old grasslands, which require a constant supply of food resources and long colony establishment times. New grasslands represent a promising measure for enhancing agricultural landscapes but must be preserved in the longer term to promote biodiversity and resilience of associated ecosystem services.

     

Effects of dams and their environmental impacts on the genetic diversity and connectivity of freshwater mussel populations in Poyang Lake Basin,China

1. Habitat fragmentation is one of the main threats to biodiversity. Barriers to dispersal caused by anthropogenic habitat alteration may affect phylogeographic patterns in freshwater mussels. Knowledge of the phylogenetic and phylogeographic patterns of unionoids is vital to inform protection of their biodiversity.
2. Here, we assessed influences of dams and their environmental effects on the genetic diversity and population connectivity of a broadly distributed freshwater mussel, Nodularia douglasiae, in Poyang Lake Basin.
3. The results showed high genetic diversity in areas without dams and low genetic diversity in areas with dams. High genetic differentiation and low gene flow were found among the 11 populations. Genetic variation was significantly correlated with dissolved oxygen levels.
4. The observation of low genetic diversity in populations separated by dams indicated that those populations were subjected to genetic erosion and demographic decline because they are disconnected from other populations with higher diversity. High genetic differentiation and low gene flow among the 11 populations could be correlated with anthropogenic habitat alteration.
5. These results indicated that anthropogenic habitat alterations have led to the decline in freshwater mussel diversity. Therefore, we recommend maintaining favourable habitat conditions and connectivity of rivers or lakes, and strengthening study of life histories with host-test experiments to identify potential host fish species to strengthen the knowledge base underpinning freshwater mussel conservation.

     

Using historical ecology to understand patterns of biodiversity in fragmented agricultural landscapes

Aim To enhance current attempts to understand biodiversity patterns by using an historical ecology approach to highlight the over‐riding influence of land‐use history in creating past, current and future patterns of biodiversity in fragmented agricultural landscapes. Methods We develop an integrative conceptual framework for understanding spatial and temporal variations in landscape patterns in fragmented agricultural landscapes by presenting five postulates (hypotheses) which highlight the important role of historical, anthropogenic disturbance regimes. We then illustrate each of these postulates with examples drawn from fragmented woodlands in agricultural areas of south‐eastern Australia, and discuss these findings in an international context. Location examples are drawn from agricultural areas in south‐eastern Australia. Results We conclude that there is limited potential to refine our understanding of patterns of biodiversity in human‐modified landscapes based on traditional concepts of island biogeography, or simple assumptions of ongoing destruction and degradation. Instead, we propose that in agricultural landscapes that were largely cleared over a century ago: (1) present‐day remnant vegetation patterns are not accidental, but are logically arrayed due to historic land‐use decisions, (2) historic anthropogenic disturbances have a major influence on current ecosystem conditions and diversity patterns, and (3) the condition of remnant ecosystems is not necessarily deteriorating rapidly. Main conclusions An historical ecology approach can enhance our understanding of why different species and ecosystem states occur where they do, and can explain internal variations in ecological conditions within remnant ecosystems, too often casually attributed to the ‘mess of history’. This framework emphasizes temporal changes (both past and future) in biotic patterns and processes in fragmented agricultural landscapes. Integration of spatially and temporally explicit historical land‐use information into ecological studies can prove extremely useful to test hypotheses of the effects of changes in landscape processes, and to enhance future research, restoration and conservation management activities.     

Microbial and macroinvertebrate communities,but not leaf decomposition,change along a mining‐induced salinity gradient

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Phylogenetic and functional metagenomic profiling for assessing microbial biodiversity in environmental monitoring

Decisions guiding environmental management need to be based on a broad and comprehensive understanding of the biodiversity and functional capability within ecosystems. Microbes are of particular importance since they drive biogeochemical cycles, being both producers and decomposers. Their quick and direct responses to changes in environmental conditions modulate the ecosystem accordingly, thus providing a sensitive readout. Here we have used direct sequencing of total DNA from water samples to compare the microbial communities of two distinct coastal regions exposed to different anthropogenic pressures: the highly polluted Port of Genoa and the protected area of Montecristo Island in the Mediterranean Sea. Analysis of the metagenomes revealed significant differences in both microbial diversity and abundance between the two areas, reflecting their distinct ecological habitats and anthropogenic stress conditions. Our results indicate that the combination of next generation sequencing (NGS) technologies and bioinformatics tools presents a new approach to monitor the diversity and the ecological status of aquatic ecosystems. Integration of metagenomics into environmental monitoring campaigns should enable the impact of the anthropogenic pressure on microbial biodiversity in various ecosystems to be better assessed and also predicted.     

Aquatic biodiversity in forests: a weak link in ecosystem services resilience

The diversity of aquatic ecosystems is being quickly reduced on many continents, warranting a closer examination of the consequences for ecological integrity and ecosystem services. Here we describe intermediate and final ecosystem services derived from aquatic biodiversity in forests. We include a summary of the factors framing the assembly of aquatic biodiversity in forests in natural systems and how they change with a variety of natural disturbances and human-derived stressors. We consider forested aquatic ecosystems as a multi-state portfolio, with diverse assemblages and life-history strategies occurring at local scales as a consequence of a mosaic of habitat conditions and past disturbances and stressors. Maintaining this multi-state portfolio of assemblages requires a broad perspective of ecosystem structure, various functions, services, and management implications relative to contemporary stressors. Because aquatic biodiversity provides multiple ecosystem services to forests, activities that compromise aquatic ecosystems and biodiversity could be an issue for maintaining forest ecosystem integrity. We illustrate these concepts with examples of aquatic biodiversity and ecosystem services in forests of northwestern North America, also known as Northeast Pacific Rim. Encouraging management planning at broad as well as local spatial scales to recognize multi-state ecosystem management goals has promise for maintaining valuable ecosystem services. Ultimately, integration of information from socio-ecological ecosystems will be needed to maintain ecosystem services derived directly and indirectly from forest aquatic biota.     

Mass–abundance scaling in avian communities is maintained after tropical selective logging

1. Selective logging dominates forested landscapes across the tropics. Despite the structural damage incurred, selectively logged forests typically retain more biodiversity than other forest disturbances. Most logging impact studies consider conventional metrics, like species richness, but these can conceal subtle biodiversity impacts. The mass–abundance relationship is an integral feature of ecological communities, describing the negative relationship between body mass and population abundance, where, in a system without anthropogenic influence, larger species are less abundant due to higher energy requirements. Changes in this relationship can indicate community structure and function changes.
2. We investigated the impacts of selective logging on the mass–abundance scaling of avian communities by conducting a meta‐analysis to examine its pantropical trend. We divide our analysis between studies using mist netting, sampling the understory avian community, and point counts, sampling the entire community.
3. Across 19 mist‐netting studies, we found no consistent effects of selective logging on mass–abundance scaling relative to primary forests, except for the omnivore guild where there were fewer larger‐bodied species after logging. In eleven point‐count studies, we found a more negative relationship in the whole community after logging, likely driven by the frugivore guild, showing a similar pattern.
4. Limited effects of logging on mass–abundance scaling may suggest high species turnover in logged communities, with like‐for‐like replacement of lost species with similar‐sized species. The increased negative mass–abundance relationship found in some logged communities could result from resource depletion, density compensation, or increased hunting; potentially indicating downstream impacts on ecosystem functions.
5. Synthesis and applications. Our results suggest that size distributions of avian communities in logged forests are relatively robust to disturbance, potentially maintaining ecosystem processes in these forests, thus underscoring the high conservation value of logged tropical forests, indicating an urgent need to focus on their protection from further degradation and deforestation.

     

Relationships between management practices and ground‐active invertebrate biodiversity in New Zealand kiwifruit orchards

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Linear woodlots increase wild bee abundance by providing additional food sources in an agricultural landscape

1. Mid-field woodlots play an important role in maintaining biodiversity in agricultural landscapes. However, it is not clear whether non-linear or linear woodlots are most beneficial for wild bee conservation.
2. We assessed the attractiveness of two common types of woodlots in an agricultural landscape in northern Poland (non-linear and linear: 7 and 9 sites, respectively) in terms of wild bee abundance, species richness, and functional diversity.
3. Linear habitats had higher abundance of wild bees. However, woodlot type did not affect wild bee species composition or functional trait composition. Species composition responded significantly to measures of syntaxonomic heterogeneity and landscape heterogeneity. Woodlot area, landscape context (isolation and landscape heterogeneity), and syntaxonomic heterogeneity explained most of the differences among habitats (non-linear vs. linear) in wild bee abundance and species richness, regardless of the habitat type. The higher attractiveness of linear woodlots was due to increased food availability in the herbaceous layer in the spring–summer (June) and summer (July–August) periods.
4. Linear woodlots have the potential to be used as tools for integrating agricultural production with biodiversity conservation and ecosystem services.

     

Using fuzzy‐coded traits to elucidate the non‐random role of anthropogenic stress in the functional homogenisation of invertebrate assemblages

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