Does rapid utilization of elevated nutrient availability allow eucalypts to dominate in the tropical savannas of Australia?

Northern Australia's savannas are among the most fire‐prone biomes on Earth and are dominated by eucalypts (Eucalyptus and Corymbia spp.). It is not clear what processes allow this group to dominate under such extreme fire frequencies and whether a superior ability to compete for nutrients and water might play a role. There is evidence that eucalypts are adapted to frequent fires; juvenile eucalypts escape the fire trap by growing rapidly in height between fires. However, non‐eucalypts are less able to escape the fire trap and tend to have stand structures strongly skewed toward suppressed juveniles. The mechanisms that drive these contrasting fire responses are not well understood. Here, we describe the results of a controlled glasshouse seedling experiment that evaluated the relative importance of nutrient and water availability in determining height growth and biomass growth of two eucalypt and one noneucalypt tree species, common in northern Australian savannas. We demonstrate that growth of eucalypt seedlings is particularly responsive to nutrient addition. Eucalypt seedlings are able to rapidly utilize soil nutrients and accumulate biomass at a much greater rate than noneucalypt seedlings. We suggest that a seasonal spike in nutrient availability creates a nutrient‐rich microsite that allows eucalypt seedlings to rapidly gain height and biomass, increasing their likelihood of establishing successfully and reaching a fire‐resistant size. Our results extend our understanding of how eucalypts dominate northern Australian savannas under extremely high fire frequencies.     

Coexistence in streams: do source–sink dynamics allow salamanders to persist with fish predators?

Theory suggests that source–sink dynamics can allow coexistence of intraguild predators and prey, but empirical evidence for this coexistence mechanism is limited. We used capture–mark–recapture, genetic methods, and stable isotopes to test whether source–sink dynamics promote coexistence between stream fishes, the intraguild predator, and stream salamanders (Dicamptodon aterrimus), the intraguild prey. Salamander populations from upstream reaches without fish were predicted to maintain or supplement sink populations in downstream reaches with fish. We found instead that downstream reaches with fish were not sinks even though fish consumed salamander larvae—apparent survival, recruitment, and population growth rate did not differ between upstream and downstream reaches. There was also no difference between upstream and downstream reaches in net emigration. We did find that D. aterrimus moved frequently along streams, but believe that this is a response to seasonal habitat changes rather than intraguild predation. Our study provides empirical evidence that local-scale mechanisms are more important than dispersal dynamics to coexistence of streams salamanders and fish. More broadly, it shows the value of empirical data on dispersal and gene flow for distinguishing between local and spatial mechanisms of coexistence.     

Length–weight relationships to quantify biomass for motile coral reef cryptofauna

Coral Reefs - Length–weight relationships (LWRs) are a fundamental tool for the non-intrusive determination of biomass, a unit of measure that facilitates the quantification of ecosystem and...     

Evaluating detectability of freshwater fish assemblages in tropical streams: Is hand-seining sufficient?

Unprecedented threats to natural ecosystems mean that accurate quantification of biodiversity is a priority, particularly in the tropics which are underrepresented in monitoring schemes. Data from a freshwater fish assemblage in Trinidad were used to evaluate the effectiveness of hand-seining as a survey method in tropical streams. We uncovered large differences in species detectability when hand-seining was used alone, in comparison with when hand-seining and electrofishing were used together. The addition of electrofishing increased the number of individuals caught threefold, and increased the biomass fivefold. Some species were never detected using hand-seining, resulting in significant underestimates of species richness; rarefaction curves suggest that even when hand-seining effort increases, species richness is still underestimated. Diversity indices (Shannon and Simpson index) reveal that diversity was also significantly lower for hand-seined samples. Furthermore, the results of multivariate analyses investigating assemblage structure also differed significantly depending on whether they were based on hand-seined data alone, or a combination of hand-seining and electrofishing. Despite the extra equipment and maintenance required, these findings underline the value of including electrofishing when sampling tropical freshwater streams.     

Does environmental disturbance also influence within-stream beta diversity of macroinvertebrate assemblages in tropical streams?

Riparian deforestation is a major threat to the ecological integrity of streams and aquatic biodiversity, influencing microhabitat availability and susceptibility to disturbances. Here we tested if riparian deforestation of tropical streams influenced beta diversity of macroinvertebrate assemblages, by comparing indices that weighted differentially rare and dominant taxa, and testing if nestedness in community composition increased in deforested streams. Within-stream beta diversity was higher in deforested than forested streams, mainly due to taxon loss and higher dominance. In disturbed streams, higher sedimentation in pool mesohabitats resulted in larger differences in community composition, whereas mesohabitats in forested streams were more stable.     

The 1991–1992 rapid ecological assessment of Palau’s coral reefs

At the request of the Palau and US governments, a team of 30 scientists under the leadership of the Nature Conservancy completed a rapid ecological assessment (REA) of nearshore marine resources in Palau in 1992. The REA provided ecological input to Palau's ongoing master plan for economic development and identified 45 marine sites worthy of special protection. The REA relied on previous literature, 1992 aerial photography, interviews, and field observations. A combination of qualitative and quantitative techniques were used to assess stony corals, other reef invertebrates, reef and shore fishes, macroscopic algae, seagrasses, sea turtles and other marine organisms. The REA covered a variety of coral reef habitats including beaches, seagrass beds, fringing reefs, lagoons, passes, channels, reef holes, patch and pinnacle reefs, barrier reefs, atolls, submerged reefs, mangroves, and rock islands. Major stresses to Palau's coral reefs include sedimentation from soil erosion, overfishing, and damage from periodic storms and waves. Minor stresses include dredge-and fill activities, sewage pollution, anchor damage, tourism use, ship groundings, aquarium fish collecting, and minor crown-of-thorns (Acanthaster) infestations.     

The contribution of size-fractionated plankton to biomass and primary production of phytoplankton in saline–alkaline ponds

Primary productivity, biomass and chlorophyll-a of size fractionated phytoplankton (<0.22 m, <3 m, <8 m, <10 m, <40 m, <64 m, <112 m and <200 m) were estimated in 6 ponds and 5 experimental enclosures. The results showed that the planktonic algae less than 10 m are important in the biomass and production of phytoplankton in saline–alkaline ponds. The production of size fractionated phytoplankton corresponding to <112 m, <10 m and <3 m in saline–alkaline ponds were 10.5 ± 6.6 , 8.6 ± 5.4 and 0.33 ± 0.1 mgC l^–1 d^–1, respectively. Mean community respiration rate was 1.80 ± 0.73, 1.69 ± 0.90 and 1.38 ± 1.12 mgC l^–1 d^–1, respectively. The average production of phytoplankton corresponding to micro- (10–112 m), nano- (3–10 m) and pico- (<3 m) were 1.61, 8.30 and 0.33 mgC l^–1 d^–1, respectively. The ratio of those to the total phytoplankton production was 15%, 79% and 3%, respectively. The mean respiration rate of the different size groups was 0.11, 0.31 and 1.38 mgC l^–1 d^–1; the ratio of those to total respiration of phytoplankton was 6%, 17% and 77%, respectively. The production of size-fractionated phytoplankton corresponding to <200 m, <10 m and <3 m in enclosures was 2.19 ± 1.63, 2.08 ± 1.75 and 0.22 ± 0.08 mgC l^–1 d^-1, respectively. Mean community respiration rates were 1.25 ± 1.55, 1.17 ± 1.42 and 0.47 ± 0.32 mgC l^–1 d^–1, respectively. The average production of phytoplankton corresponding to micro- (10–200 m), nano- (3–10 m) and pico- (<3 m) plankton was 0.11, 1.86 and 0.22 mgC l^–1 d^–1, respectively. The ratio of those to the total production of phytoplankton was 5%, 85% and 10%, respectively. The mean respiration rate of different size groups were 0.08, 0.72 and 0.46 mgC l^–1 d^–1, the ratio of those to total respiration of phytoplankton was 6%, 57% and 37%, respectively. The concentrations of chlorophyll-a of the phytoplankton in the corresponding size of micro- (10–112 m), nano- (3–10 m) and pico- (<3 m) plankton in the experimental ponds were 19.3, 98.2 and 11. 9 g l^–1, respectively. The ratio of those to the total chlorophyll-a was 15%, 76% and 9%, respectively. The concentrations of chlorophyll-a of phytoplankton micro- (10–200 m), nano- (3–10 m) and pico- (<3 m) plankton in enclosures were 1.7, 34.3 and 3.0 g l^–1, respectively. The ratio of those to the total chlorophyll-a was 4%, 88% and 8%, respectively.     

Response of macroinvertebrates and water quality to long-term decrease in organic pollution in some Estonian streams during 1990–1998

A survey was started in 1990 of the benthic macroinvertebrate community and water quality in some Estonian streams affected by organic pollution, especially the spreading of slurry on fields. The study was expanded during 1991–1998 to involve 47 sampling sites. Long-term dependence was tested using the SAS/GLM contrast statement. All biological indices used (BMWP-ASPT, number of ASPT scoring families (N_ASPT), Danish Fauna Index, Belgian Biotic Index, EPT-index) were significantly related to the degree of organic pollution. Compared with the reference sites, the test sites revealed significantly lower water quality: higher BOD₇, total P and NH₄; lower pH and all hydrobiological indices. Season and stream size at the sampling site (expressed in km from the stream source) had significant effects on both hydrochemical and hydrobiological variables. On the contrary, discharge and precipitation had no significant influence on the studied water quality indicators, with the exception of pH in a few cases. At the same time, all but three variables for the reference and the test sites were different at the beginning of the sampling period; this difference remained only for a few sensitive indices such as ASPT and Danish Fauna Index at the end of the period, indicating general improvement in the environment.     

Niche breadth of invertebrate shredders in tropical forest streams: which taxa have restricted habitat preferences?

Despite the importance of shredders in organic matter processing in streams, information about the habitat specificities of different taxa is scarce. Herein, we evaluated the habitat preferences of invertebrate shredders in tropical forest streams. A total of 72 leaf patches were sampled in three Atlantic Forest streams (SE Brazil). For each sample, 20 environmental variables were measured, including water properties and characteristics of the leaf patch. We used an Outlying Mean Index analysis to evaluate the niche breadth and overlap of each taxon found as well as habitat preferences. In total, we found 14 shredder taxa in 68 leaf patches, and the gradient of environmental conditions influenced the distribution of most taxa. Considering taxa that occurred in atypical habitats in the study sites, Blaberidae (semiaquatic cockroaches) and Trichodactylus fluviatilis (Decapoda) showed niche segregation, while Macrobrachium potiuna (Decapoda), Tupiperla (Plecoptera), and Nectopsyche (Trichoptera) showed niche overlap. On the other hand, Heterelmis (Coleoptera), Stenochironomus (Diptera), Phylloicus major, and Triplectides gracilis (Trichoptera) occurred in typical habitats. These results showed that shredder taxa had different habitat preferences. The observed differences in niche breadths and habitat specificities among taxa probably result in different leaf processing rates across leaf patches in Atlantic Forest streams.

     

A rapid gas chromatographic method for the determination of poly-β-hydroxybutyric acid in microbial biomass

Summary The gas chromatographic method for the determination of poly--hydroxybutyric acid (PHB) consists of a mild acid or alkaline methanolysis of poly--hydroxybutyric acid directly without previous extraction of PHB from the cells; this is followed by gas chromatography of the 3-hydroxybutyric acid methylester. The method is characterized by high accuracy and excellent reproducibility, permitting determinations as low as 10^–5 g/l. Only 4 h is required from sampling from the fermenter till completion of the PHB determination.     

Does sea-grass biomass control the density of peracarids (Crustacea: Peracarida) in tropical lagoons?

We analyzed the time-space variation of the peracarid crustaceans that inhabit seagrasses of the Alvarado Lagoon System, Veracruz, Gulf of Mexico. The organisms were collected from 108 samples in six sites with Ruppia maritima beds (December 1992 to November 1994). The assemblage was composed of 11 species. Eight species of Amphipoda (Hourstonius laguna, Cerapus benthophilus, Apocorophium louisianum, Grandidierella bonnieroides, Leptocheirus rhizophorae, Gammarus mucronatus, Melita longisetosa and Haustorius sp.), one of Isopoda (Cassidinidea ovalis) and two of Tanaidacea (Discapseudes holthuisi and Leptochelia savignyi) were identified. Taxocoenosis, density and biomass of peracarids showed seasonal pulses related to R. maritima biomass, salinity variation, epicontinental affluent and inlets. The species C. ovalis, G. mucronatus, A. louisianum and D. holthuisi were dominant.     

Can macroinvertebrate rapid bioassessment methods be used to assess river health during drought in south eastern Australian streams?

• 1 Despite significant concern about drought impacts in Australia, there have been no broad‐scale studies of drought effects on river health. A severe and prolonged drought has been acting on many streams in south eastern Australia over the past decade. EPA Victoria has undertaken rapid bioassessment (RBA) of over 250 stream reference sites since 1990, providing an opportunity for a before‐after‐control‐impact investigation of drought related changes to macroinvertebrate indices and water quality. This study uses data from 1990 to 2004 to critically evaluate the effectiveness of using RBA methods and indices, which were designed for assessment of human impacts, for monitoring streams during drought.
• 2 Reference stream sites across Victoria (those with minimal anthropogenic disturbances and repeatedly sampled) were classified as being ‘in drought’ or ‘not in drought’ using the Bureau of Meteorology’s rainfall deficiency definition. Four biological indices (SIGNAL, EPT, Family Richness and AUSRIVAS) were calculated for combined autumn and spring samples for edge and riffle habitats for the selected sites.
• 3 General linear models and paired t‐tests were used to detect drought related changes to index and water quality values at state‐wide and bioregional scales. Changes in taxa constancy were examined to determine which taxa were sensitive to or benefited from drought conditions. Frequency of site failure against biological objectives specified in the State Environment Protection Policy (Waters of Victoria) (herein termed ‘SEPP WoV’) before and during drought was also examined to detect changes in a management context.
• 4 Few significant changes in index values were detected for riffle habitat samples. Rates of failure against biological objectives were similar before and during drought for riffle samples. In contrast, edge habitat AUSRIVAS and SIGNAL scores were significantly reduced at the state‐wide scale and most indices showed significant declines in the lower altitude forests, and foothills and coastal plains bioregions.
• 5 Generally, more pollution tolerant, lentic taxa replaced sensitive and flow‐requiring taxa in edge samples during drought. In contrast, there were few reductions in the taxa of riffle samples during drought. However, many pool preferring, but pollution sensitive taxa occurred more frequently in riffle areas. Hence, the riffle community began to resemble that of pools and edges. This was attributed to decreased flow and increased ‘lentic’ habitat opportunities in riffles.
• 6 Detection of a drought effect was confined to the edge habitat and site failure could be assigned to drought and anthropogenic impacts, in conjunction or alone. The riffle sampling protocol was resistant to detection of drought effects as samples were only taken when sufficient water was present within this habitat. Therefore, biological changes at sites not meeting policy objectives for riffle habitats can be attributed to anthropogenic rather than drought impacts.

     

Length–weight relationships of mesopelagic fishes from the equatorial and tropical Atlantic waters: influence of environment and body shape

Length–weight relationships (LWRs) were estimated for 36 mesopelagic fish species collected from the equatorial and tropical Atlantic encompassing several oceanographic regions: oligotrophic, equatorial, Cape Blanc, Cape Verde and the Canary Islands. The sample was composed of myctophids (25 species), gonostomatids (5), sternoptychids (3), stomiids (2) and phosichthyids (1). The species were clustered according to body shape: “short-deep” (sternoptychids), “elongate” (gonostomatids, stomiids and some phosichthyids) and “fusiform” (myctophids and some phosichthyids). Three types of weight and LWRs were considered: wet weight (WW), eviscerated wet weight (eWW) and eviscerated dry weight (eDW). The study demonstrated that most species present a positive allometric growth, independent of the weight used. However, the allometric value varied in 40–50% of species depending on the type of weight considered. Significant variations linked to fish morphology were found in the relationship between the slope and intercept of the LWR equation. Significant differences were also noted in the water content linked to fish body shape. Based on the distributions of several species we compare their fitness between oceanographic regions using the relative condition factor (K_rel). Except for Diaphus brachycephalus (oligotrophic vs. equatorial waters) and Lampanyctus alatus (equatorial, Cape Blanc, Cape Verde and the Canary Islands), no regional significant differences were observed in the species analysed.     

Paths to last in mixed crop–livestock farming: lessons from an assessment of farm trajectories of change

Mixed crop–livestock systems, combining livestock and cash crops at farm level, are considered to be suitable for sustainable intensification of agriculture. Ensuring the survival of mixed crop–livestock systems is a challenge for European agriculture: the number of European mixed crop–livestock farms has been decreasing since 1970. Analysis of farming system dynamics may elucidate past changes and the forces driving this decline. The objectives of this study were (i) to identify the diversity of paths that allowed the survival of mixed crop–livestock farming and (ii) to elucidate the driving forces behind such survival. We analysed the variety of farm trajectories from 1950 to 2005. We studied the entire farm population of a case study site, located in the ‘Coteaux de Gascogne’ region. In this less favoured area of south-western France, farmers have limited specialisation. Currently, half of the farms use mixed crop–livestock systems. The data set of 20 variables for 50 farms on the basis of six 10-year time steps was collected through retrospective surveys. We used a two-step analysis including (i) a visual assessment of the whole population of individual farm trajectories and (ii) a computer-based typology of farm trajectories on the basis of a series of multivariate analyses followed by automatic clustering. The European Common Agricultural Policy, market globalisation and decreasing workforce availability were identified as drivers of change that favoured the specialisation process. Nevertheless, farmers’ choices and values have opposed against these driving forces, ensuring the survival of some mixed crop–livestock farming systems. The trajectories were clustered into five types, four of which were compatible with mixed crop–livestock systems. The first type was the maximisation of autonomy by combining crops and livestock. The second type was diversification of production to exploit economies of scope and protect the farm against market fluctuations. The other two types involved enlargement and progressive adaptation of the farm to the familial workforce. The survival of mixed crop–livestock systems in these two types is largely dependent on workforce availability. Only one type of trajectory, on the basis of enlargement and economies of scale, did not lead to mixed crop–livestock systems. In view of the current evolution of the driving forces, maximising autonomy and diversification appear to be suitable paths to deal with current challenges and maintain mixed crop–livestock systems in Europe.     

Selective logging in tropical forests decreases the robustness of liana–tree interaction networks to the loss of host tree species

Selective logging is one of the major drivers of tropical forest degradation, causing important shifts in species composition. Whether such changes modify interactions between species and the networks in which they are embedded remain fundamental questions to assess the ‘health’ and ecosystem functionality of logged forests. We focus on interactions between lianas and their tree hosts within primary and selectively logged forests in the biodiversity hotspot of Malaysian Borneo. We found that lianas were more abundant, had higher species richness, and different species compositions in logged than in primary forests. Logged forests showed heavier liana loads disparately affecting slow-growing tree species, which could exacerbate the loss of timber value and carbon storage already associated with logging. Moreover, simulation scenarios of host tree local species loss indicated that logging might decrease the robustness of liana–tree interaction networks if heavily infested trees (i.e. the most connected ones) were more likely to disappear. This effect is partially mitigated in the short term by the colonization of host trees by a greater diversity of liana species within logged forests, yet this might not compensate for the loss of preferred tree hosts in the long term. As a consequence, species interaction networks may show a lagged response to disturbance, which may trigger sudden collapses in species richness and ecosystem function in response to additional disturbances, representing a new type of ‘extinction debt’.     

Heat tolerance variation reveals vulnerability of tropical herbivore–parasitoid interactions to climate change

Assessing the heat tolerance (CTmax) of organisms is central to understand the impact of climate change on biodiversity. While both environment and evolutionary history affect CTmax, it remains unclear how these factors and their interplay influence ecological interactions, communities and ecosystems under climate change. We collected and reared caterpillars and parasitoids from canopy and ground layers in different seasons in a tropical rainforest. We tested the CTmax and Thermal Safety Margins (TSM) of these food webs with implications for how species interactions could shift under climate change. We identified strong influence of phylogeny in herbivore–parasitoid community heat tolerance. The TSM of all insects were narrower in the canopy and parasitoids had lower heat tolerance compared to their hosts. Our CTmax-based simulation showed higher herbivore–parasitoid food web instability under climate change than previously assumed, highlighting the vulnerability of parasitoids and related herbivore control in tropical rainforests, particularly in the forest canopy.     

Length–weight relationships for five species of Chimaerids and two species of Rhinochimaerids to the west of Ireland

Length–weight regressions for five chimaerid species, Chimaera monstrosa Linnaeus, 1758, Chimaera opalescens Luchetti, Iglesias & Sellos, 2011, Hydrolagus affinis de Brito Capello, 1868, Hydrolagus pallidus Hardy & Stehmann, 1990 and Hydrolagus mirabilis Collett, 1904, and two Rhinochimaerid species, Rhinochimaera atlantica Holt & Byrne, 1909 and Harriotta raleighana Goode & Beane, 1895, are calculated from data collected during a series of deepwater surveys conducted by the Irish Marine Institute from 2006 to 2009. This work was carried out on the continental slope to the west and northwest of Ireland and the northern slope of the Porcupine bank. Samples were measured fresh at the end of each haul. Due to the fragility of the tails of many of these species, length measurements for Chimaerids were made to the pre supra caudal fin, while for Rhinochimaerids they were made to the second dorsal fin. Lengths were measured to the nearest centimetre below and weights were recorded to the nearest gram. Outliers were removed from the dataset according to difference in fits (DFFITS) (Belsley et al., Regression diagnostics: Identifying influential data and sources of collinearity, John Wiley & Sons; 1980). b values for the Chimaeridae ranged from 2.915 to 3.075, while r² values ranged from .981 to .995. b values for H. raleighana and R. atlantica were 2.764 and 3.505 and r² values were .977 and .976 respectively.