Microbial biosignatures in ancient deep-sea hydrothermal sulfides

Deep-sea hydrothermal systems provide ideal conditions for prebiotic reactions and ancient metabolic pathways and, therefore, might have played a pivotal role in the emergence of life. To understand this role better, it is paramount to examine fundamental interactions between hydrothermal processes, non-living matter, and microbial life in deep time. However, the distribution and diversity of microbial communities in ancient deep-sea hydrothermal systems are still poorly constrained, so evolutionary, and ecological relationships remain unclear. One important reason is an insufficient understanding of the formation of diagnostic microbial biosignatures in such settings and their preservation through geological time. This contribution centers around microbial biosignatures in Precambrian deep-sea hydrothermal sulfide deposits. Intending to provide a valuable resource for scientists from across the natural sciences whose research is concerned with the origins of life, we first introduce different types of biosignatures that can be preserved over geological timescales (rock fabrics and textures, microfossils, mineral precipitates, carbonaceous matter, trace metal, and isotope geochemical signatures). We then review selected reports of biosignatures from Precambrian deep-sea hydrothermal sulfide deposits and discuss their geobiological significance. Our survey highlights that Precambrian hydrothermal sulfide deposits potentially encode valuable information on environmental conditions, the presence and nature of microbial life, and the complex interactions between fluids, micro-organisms, and minerals. It further emphasizes that the geobiological interpretation of these records is challenging and requires the concerted application of analytical and experimental methods from various fields, including geology, mineralogy, geochemistry, and microbiology. Well-orchestrated multidisciplinary studies allow us to understand the formation and preservation of microbial biosignatures in deep-sea hydrothermal sulfide systems and thus help unravel the fundamental geobiology of ancient settings. This, in turn, is critical for reconstructing life's emergence and early evolution on Earth and the search for life elsewhere in the universe.     

Snapshot of an early Paleoproterozoic ecosystem: Two diverse microfossil communities from the Turee Creek Group,Western Australia

Eighteen microfossil morphotypes from two distinct facies of black chert from a deep‐water setting of the c. 2.4 Ga Turee Creek Group, Western Australia, are reported here. A primarily in situ, deep‐water benthic community preserved in nodular black chert occurs as a tangled network of a variety of long filamentous microfossils, unicells of one size distribution and fine filamentous rosettes, together with relatively large spherical aggregates of cells interpreted as in‐fallen, likely planktonic, forms. Bedded black cherts, in contrast, preserve microfossils primarily within, but also between, rounded clasts of organic material that are coated by thin, convoluted carbonaceous films interpreted as preserved extracellular polymeric substance (EPS). Microfossils preserved within the clasts include a wide range of unicells, both much smaller and larger than those in the nodular black chert, along with relatively short, often degraded filaments, four types of star‐shaped rosettes and umbrella‐like rosettes. Large, complexly branching filamentous microfossils are found between the clasts. The grainstone clasts in the bedded black chert are interpreted as transported from shallower water, and the contained microfossils thus likely represent a phototrophic community. Combined, the two black chert facies provide a snapshot of a microbial ecosystem spanning shallow to deeper‐water environments, and an insight into the diversity of life present during the rise in atmospheric oxygen. The preserved microfossils include two new, distinct morphologies previously unknown from the geological record, as well as a number of microfossils from the bedded black chert that are morphologically similar to—but 400–500 Ma older than—type specimens from the c. 1.88 Ga Gunflint Iron Formation. Thus, the Turee Creek Group microfossil assemblage creates a substantial reference point in the sparse fossil record of the earliest Paleoproterozoic and demonstrates that microbial life diversified quite rapidly after the end of the Archean.     

Local paleoenvironmental controls on the carbon‐isotope record defining the Bitter Springs Anomaly

Large magnitude (>10‰) carbon‐isotope (δ¹³C) excursions recorded in carbonate‐bearing sediments are increasingly used to monitor environmental change and constrain the chronology of the critical interval in the Neoproterozoic stratigraphic record that is timed with the first appearance and radiation of metazoan life. The ~10‰ Bitter Springs Anomaly preserved in Tonian‐aged (1000–720 Ma) carbonate rocks in the Amadeus Basin of central Australia has been offered as one of the best preserved examples of a primary marine δ¹³C excursion because it is regionally reproducible and δ¹³C values covary in organic and carbonate carbon arguing against diagenetic exchange. However, here we show that δ¹³C values defining the excursion coincide with abrupt lithofacies changes between regularly cyclic grainstone and microbial carbonates, and desiccated red bed mudstones with interbedded evaporite and dolomite deposits, recording local environmental shifts from restricted marine conditions to alkaline lacustrine and playa settings that preserve negative (?4‰) and positive (+6‰) δ¹³C values, respectively. The stratigraphic δ¹³C pattern in both organic and carbonate carbon recurs within the basin in a similar way to associated sedimentary facies, reflecting the linkage of local paleoenvironmental conditions and δ¹³C values. These local excursions may be time transgressive or record a relative sea‐level influence manifest through exposure of sub‐basins isolated by sea‐level fall below shallow sills, but are independent of secular seawater variation. As the shallow intracratonic setting of the Bitter Springs Formation is typical of other Neoproterozoic carbonate successions used to construct the present δ¹³C seawater record, it identifies the potential for local influences on δ¹³C excursions that are neither diagenetic nor representative of the global exogenic cycle.     

Formation and stability of oxygen-rich bubbles that shape photosynthetic mats

Gas release in photic-zone microbialites can lead to preservable morphological biosignatures. Here, we investigate the formation and stability of oxygen-rich bubbles enmeshed by filamentous cyanobacteria. Sub-millimetric and millimetric bubbles can be stable for weeks and even months. During this time, lithifying organic-rich laminae surrounding the bubbles can preserve the shape of bubbles. Cm-scale unstable bubbles support the growth of centimetric tubular towers with distinctly laminated mineralized walls. In environments that enable high photosynthetic rates, only small stable bubbles will be enclosed by a dense microbial mesh, while in deep waters extensive microbial mesh will cover even larger photosynthetic bubbles, increasing their preservation potential. Stable photosynthetic bubbles may be preserved as sub-millimeter and millimeter-diameter features with nearly circular cross-sections in the crests of some Proterozoic conical stromatolites, while centrimetric tubes formed around unstable bubbles provide a model for the formation of tubular carbonate microbialites that are not markedly depleted in ¹³C.     

Microbially influenced formation of Neoarchean ooids

Ooids are accretionary grains commonly reported from turbulent, shallow‐water environments. They have long been associated with microbially dominated ecosystems and often occur in close proximity to, or embedded within, stromatolites, yet have historically been thought to form solely through physicochemical processes. Numerous studies have revealed both constructive and destructive roles for microbes colonizing the surfaces of modern calcitic and aragonitic ooids, but there has been little evidence for the operation of these processes during the Archean and Proterozoic, when both ooids and microbially dominated ecosystems were more widespread. Recently described carbonate ooids from the 2.9 Ga Pongola Supergroup, South Africa, include well‐preserved examples composed of diagenetic dolomite interpreted to have formed from a high‐Mg‐calcite precursor. Spatial distributions of organic matter and elements associated with metabolic activity (N, S, and P) were interpreted as evidence for a biologically induced origin. Here, we describe exceptionally well‐preserved ooids composed of calcite, collected from Earth's oldest known carbonate lake system, the ~2.72 Ga Meentheena Member (Tumbiana Formation), Fortescue Group, Western Australia. We used optical microscopy, Raman spectroscopy, XRD, SEM‐EDS, LA‐ICP‐MS, EA‐IRMS, and a novel micro‐XRF instrument to investigate an oolite shoal deposited between stromatolites that preserve abundant evidence for microbial activity. We report an extremely fine, radial‐concentric, calcitic microfabric that is similar to the primary and early diagenetic fabrics of calcitic ooids reported from modern temperate lakes. Early diagenetic silica has trapped isotopically light and thermally mature organic matter. The close association of organic matter with mineral phases and microfabrics related to primary and early diagenetic processes suggest incorporation of organic matter occurred during accretion, likely due to the presence of microbial biofilms. We conclude that the oldest known calcitic ooids were likely formed through processes similar to those that mediate the accretion of ooids in similar environments today, including formation within a microbial biosphere.     

Facies evolution and sequence chronostratigraphy of a “mid”-Cretaceous shallow-water carbonate succession of the Apulia Carbonate Platform from the northern Murge area (Apulia,southern Italy)

The “mid”-Cretaceous carbonate succession of the Apulia Carbonate Platform cropping out in northern Murge area (Apulia, southern Italy) is composed of shallow-water carbonate rocks and is over 400 m in thickness. This paper focuses on the lithofacies analysis of this carbonate succession, its paleoenvironmental interpretation, and its sequence-chronostratigraphic architecture. Lithofacies analysis permitted to identify deposits which can be grouped into the following three facies belts: (1) terrestrial facies belt formed by: intraclast-supported paleosoils; solution-collapse breccias; (2) restricted facies belt made up of lithofacies deposited in protected peritidal environments; (3) normal-marine facies belt made up of lithofacies formed in moderate- to high-energy subtidal environments. The detailed study both in outcrops and in thin-sections revealed that, at the bed scale, lithofacies are cyclically arranged and form shallowing-upward small-scale depositional sequences comparable to parasequences and/or simple sequences. The following three small-scale sequence types have been distinguished: (1) subtidal sequences mostly made up of lithofacies formed in the normal-marine open subtidal domain; (2) peritidal sequences made up of lithofacies formed in the restricted peritidal domain; (3) peritidal sequences showing a cap formed by paleosoils. Small-scale sequences are not randomly arranged in the compiled succession but form discrete packages, or sets, that alternate in the sedimentary record. The repetition of such small-scale sequence packages in the succession has been the key to recognize large-scale sequences comparable to third-order depositional sequences. Although sedimentological data are often fragmentary due to late dolomitization, four large-scale sequences have been distinguished. The data support a generalized landward-backstepping of facies belts during transgression, which implies a gradual gain of accommodation culminating with the deposition of a package of small-scale sequences formed by normal-marine subtidal deposits. These mark periods of maximum accommodation space and form the maximum-flooding zones of large-scale sequences. A gradual seaward progradation of facies belts is recorded during highstand conditions, which implies a gradual loss of accommodation culminating with the deposition of a package of peritidal small-scale sequences capped by paleosoils or by solution-collapse breccias. The occurrence of terrestrial deposits marks periods of minimum accommodation on the platform and determines the sequence boundary of large-scale sequences. The large-scale sequences identified in this study fit with the main transgressive/regressive cycles published in the sequence-chronostratigraphic chart of European basins. As a consequence, it is interpreted that changes of the sea level recorded at the scale of European basins played an important role in determining the sequence-stratigraphic architecture of the studied succession. In spite of this, the occurrence of solution-collapse breccias, which implies a significant gap in carbonate sedimentation in between Early and Middle Cenomanian times, may also have an alternative interpretation. In particular, this deposit may represent the local fingerprint of the well-known tectonic phase which, during Late Albian-Early/Middle Cenomanian times, determined the subaerial exposure of large parts of Periadriatic carbonate platforms producing a marked regional unconformity.     

Toe-of-slope deposits of a Givetian reef-rimmed platform: provenance of calcareous density-flow deposits (Rabat-Tiflet-Zone,Morocco)

Givetian subaqueous density-flow deposits reveal the existence of a peritidal carbonate platform in sedimentary basins preserved within the Rabat-Tiflet-Zone of Morocco. The calcareous component assemblage displays a photozoan carbonate production mode of the neritic source environments. Characteristic elements of the allochthonous faunal association are colonial tabulate corals, stromatoporoids, crinoids, bryozoans and thick-shelled brachiopods. Active growing reefs and cortoid sand shoals at the platform margin as well as periplatform carbonates at the uppermost slope settings contributed bioclastic and lithoclastic lime debris to the toe-of-slope of the carbonate apron. Bipartite cobble rudstone beds are interpreted as deposits of hyperconcentrated density flows, which cannot be maintained on very low-angle slopes for as long as more dilute flows and represent short run-out distances. Beds consisting of mostly well-organized pebbly grainstones, packstones and grainstone-wackestone couplets are deposits of surge-like concentrated flows and turbidity flows.     

Cherty carbonate facies of the Montoya Group, southern New Mexico and western Texas and its regional correlatives: a record of Late Ordovician paleoceanography on southern Laurentia

The Upper Ordovician Montoya Group in southern New Mexico and westernmost Texas records predominantly subtidal deposition on a gently dipping carbonate ramp that was subsequently nearly entirely dolomitized. The medial unit of the Montoya Group, the Aleman Formation is unique because it contains abundant chert (10–70% by volume). The chert occurs as: (1) thin continuous beds of sponge spicules within mudstone or calcisiltite; (2) discontinuous, lenses or nodules within skeletal wackestones and packstones; or (3) as a replacement of skeletal grains and burrows. Coeval skeletal grainstones and muddy peritidal facies contain little chert. Phosphate (up to 5 wt.%) occurs within the underlying Upham Formation and the Aleman Formation as replacement of fossils and peloids. The abundance of chert and phosphate in these subtidal facies indicates they formed within a region of strong upwelling. Regional correlation with Upper Ordovician cherty units along the periphery of southern Laurentia and other low latitude continents suggests that upwelling was widespread and long-lived during the Late Ordovician. The upwelling is interpreted to record vigorous oceanic circulation produced by the onset of glaciation on Gondwana during this period. Late Ordovician relative sea-level curves around the periphery of Laurentia indicate correlative third-order (1–3 my duration) fluctuations that may provide a means for high-resolution global correlations. However, the mechanism(s) that produced these long-term fluctuations are unclear.     

高于庄古生物学(英)

距今 14～ 16亿年的华北地区高于庄组黑色层状、结核状和透镜状燧石与叠层石的黑色硅质部分中保存着极丰富的原核和真核生物微化石。宏观藻类在该组的页岩中亦已发现。本组为评估中元古代生命状况、古环境和前显生宙生物地层提供了重要的生物信息。迄今为止在高于庄组地层中已有百余个化石种被人们认识。根据古植物和古环境的特征这些生物种类可分为三个不同的组合 ,即 :1.颤藻和色球藻组合 ,出现在高于庄组一段 ,代表浅水藻席建造者和居住者与一些可能的外来浮游生物的种类 ;2 .念珠藻组合 ,仅发生在该组的二段 ,还含一些底栖藻席建造者或居住者的种类 ;3.第四段的色球藻组合 ,它代表了潮间带至亚潮带的藻席建造者和外来的种类。元古代燧石中的微化石 ,尤其是蓝藻化石 ,尽管在元古代它们就已不断趋向于多样化 ,但由于它们形态上的保守性 ,对环境的指示比对地质时代的指示更有价值。高于庄组微化石的特点和大多数链状念珠藻垂直层理保存的事实表明 :1.高于庄组微化石的个体大小随时间趋向于增大 ;2 .高于庄组的沉积可能是处于一个淡水环境 ,且沉积率可能等于或少于微生物的生长率 ;3.高于庄组织沉积模式可能是从潮间带至亚潮带或深海 ,然后再至潮间带或潮上带 ;4 .当高于庄组沉积时真核生物亦已出现。     

Effects of RuBisCO and CO2 concentration on cyanobacterial growth and carbon isotope fractionation

Carbon isotope biosignatures preserved in the Precambrian geologic record are primarily interpreted to reflect ancient cyanobacterial carbon fixation catalyzed by Form I RuBisCO enzymes. The average range of isotopic biosignatures generally follows that produced by extant cyanobacteria. However, this observation is difficult to reconcile with several environmental (e.g., temperature, pH, and CO₂ concentrations), molecular, and physiological factors that likely would have differed during the Precambrian and can produce fractionation variability in contemporary organisms that meets or exceeds that observed in the geologic record. To test a specific range of genetic and environmental factors that may impact ancient carbon isotope biosignatures, we engineered a mutant strain of the model cyanobacterium Synechococcus elongatus PCC 7942 that overexpresses RuBisCO across varying atmospheric CO₂ concentrations. We hypothesized that changes in RuBisCO expression would impact the net rates of intracellular CO₂ fixation versus CO₂ supply, and thus whole-cell carbon isotope discrimination. In particular, we investigated the impacts of RuBisCO overexpression under changing CO₂ concentrations on both carbon isotope biosignatures and cyanobacterial physiology, including cell growth and oxygen evolution rates. We found that an increased pool of active RuBisCO does not significantly affect the ¹³C/¹²C isotopic discrimination (ε_p) at all tested CO₂ concentrations, yielding ε_p of ≈ 23‰ for both wild-type and mutant strains at elevated CO₂. We therefore suggest that expected variation in cyanobacterial RuBisCO expression patterns should not confound carbon isotope biosignature interpretation. A deeper understanding of environmental, evolutionary, and intracellular factors that impact cyanobacterial physiology and isotope discrimination is crucial for reconciling microbially driven carbon biosignatures with those preserved in the geologic record.     

Wetland megabias: ecological and ecophysiological filtering dominates the fossil record of hot spring floras

Siliceous hot spring deposits form at Earth's surface above terrestrial hydrothermal systems, which create low‐sulphidation epithermal mineral deposits deeper in the crust. Eruption of hot spring waters and precipitation of opal‐A create sinter apron complexes and areas of geothermally influenced wetland. These provide habitat for higher plants that may be preserved in situ, by encrustation of their surfaces and permineralization of tissues, creating T⁰ plant assemblages. In this study, we review the fossil record of hot spring floras from subfossil examples forming in active hot spring areas, via fossil examples from the Cenozoic, Mesozoic and Palaeozoic to the oldest known hot spring flora, the Lower Devonian Rhynie chert. We demonstrate that the well‐known megabias towards wetland plant preservation extends to hot spring floras. We highlight that the record of hot spring floras is dominated by plants preserved in situ by permineralization on geothermally influenced wetlands. Angiosperms (members of the Cyperaceae and Restionaceae) dominate Cenozoic floras. Equisetum and gleicheniaceous ferns colonized Mesozoic (Jurassic) geothermal wetlands and sphenophytes and herbaceous lycophytes late Palaeozoic examples. Evidence of the partitioning of wetland hydrophytic and dryland mesophytic communities, a feature of active geothermal areas, is provided by well‐preserved and well‐exposed fossil sinter apron complexes, which record flooding of dryland environments by thermal waters and decline of local forest ecosystems. Such observations from the fossil record back‐up hypotheses based on active hot springs and vegetation that suggest removal of taphonomic filtering in hot spring environments is accompanied by an increase in ecological and ecophysiological filtering. To this end we also demonstrate that in the hot spring environment, the wetland bias extends beyond broad ecology. We show that ecosystems preserved from the Cenozoic to the Mesozoic provide clear evidence that the dominant plants preserved in situ by hot spring activity are also halophytic, tolerant of high pH and high concentrations of heavy metals. By extension, we hypothesize that this is also the case in Palaeozoic hot spring settings and extended to the early land plant flora of the Rhynie chert.     

Lateral variability of shallow-water facies and high-frequency cycles in foreland basin carbonate platforms (Pennsylvanian,NW Spain)

The kilometer-sized and 100-meter-thick carbonate platforms of the Escalada Fm. I and II (Middle Pennsylvanian) accumulated in the foredeep of a marine foreland basin during the transgressive phases of 3rd-order sequences and were buried by prograding siliciclastic deltaic systems in the course of the subsequent highstand. The carbonate successions show a general upward trend from grain- to mud-supported carbonates, interfingering landwards with siliciclastic deposits of a mixed siliciclastic-carbonate shelf (Fito Fm.) adjacent to deltaic systems. The spatial variability of the carbonate facies and the high-frequency (4th–5th order) cycles, from the platform margin-outer platform to the deltaic systems, has been interpreted from basin reconstruction. Carbonate facies include skeletal grainstone to packstone, ooidal grainstone, burrowed skeletal wackestone, microbial and algal boundstone to wackestone forming mounds, various algal bafflestone and coral biostromes in areas with siliciclastic input. These high-frequency transgressive–regressive cycles are interpreted to record allocyclic forcing of high-amplitude glacioeustasy because they show characteristic features of icehouse cycles: thickness >5 m, absence of peritidal facies, and in some cases, subaerial exposure surfaces capping the cycles. In the mixed cycles, siliciclastics are interpreted as late highstand to lowstand regressive deposits, whereas carbonates as transgressive-early highstand deposition. The lateral and vertical variability of the facies in the glacioeustatic cycles was a response to deposition in a rapidly subsiding, active foreland basin subjected to siliciclastic input, conditions that might be detrimental to the growth of high-relief carbonate systems.     

高于庄古生物学

距今14～16亿年的华北地区高于庄组黑色层状、结核状和透镜状燧石与叠层石的黑色硅质部分中保存着极丰富的原核和真核生物微化石.宏观藻类在该组的页岩中亦已发现.本组为评估中元古代生命状况、古环境和前显生宙生物地层提供了重要的生物信息.迄今为止在高于庄组地层中已有百余个化石种被人们认识.根据古植物和古环境的特征这些生物种类可分为三个不同的组合,即:1.颤藻和色球藻组合,出现在高于庄组一段,代表浅水藻席建造者和居住者与一些可能的外来浮游生物的种类;2.念珠藻组合,仅发生在该组的二段,还含一些底栖藻席建造者或居住者的种类;3.第四段的色球藻组合,它代表了潮间带至亚潮带的藻席建造者和外来的种类.元古代燧石中的微化石,尤其是蓝藻化石,尽管在元古代它们就已不断趋向于多样化,但由于它们形态上的保守性,对环境的指示比对地质时代的指示更有价值.高于庄组微化石的特点和大多数链状念珠藻垂直层理保存的事实表明:1.高于庄组微化石的个体大小随时间趋向于增大;2.高于庄组的沉积可能是处于一个淡水环境,且沉积率可能等于或少于微生物的生长率;3. 高于庄组织沉积模式可能是从潮间带至亚潮带或深海,然后再至潮间带或潮上带;4.当高于庄组沉积时真核生物亦已出现.     

Geological and trace element evidence for a marine sedimentary environment of deposition and biogenicity of 3.45 Ga stromatolitic carbonates in the Pilbara Craton, and support for a reducing Archaean ocean

Bedded carbonate rocks from the 3.45 Ga Warrawoona Group, Pilbara Craton, contain structures that have been regarded either as the oldest known stromatolites or as abiotic hydrothermal deposits. We present new field and petrological observations and high‐precision REE + Y data from the carbonates in order to test the origin of the deposits. Trace element geochemistry from a number of laminated stromatolitic dolomite samples of the c. 3.40 Ga Strelley Pool Chert conclusively shows that they precipitated from anoxic seawater, probably in a very shallow environment consistent with previous sedimentological observations. Edge‐wise conglomerates in troughs between stromatolites and widespread cross‐stratification provide additional evidence of stromatolite construction, at least partly, from layers of particulate sediment, rather than solely from rigid crusts. Accumulation of particulate sediment on steep stromatolite sides in a high‐energy environment suggests organic binding of the surface. Relative and absolute REE + Y contents are exactly comparable with Late Archaean microbial carbonates of widely agreed biological origin. Ankerite from a unit of bedded ankerite–chert couplets from near the top of the stratigraphically older (3.49 Ga) Dresser Formation, which immediately underlies wrinkly stromatolites with small, broad, low‐amplitude domes, also precipitated from anoxic seawater. The REE + Y data of carbonates from the Strelley Pool Chert and Dresser Formation contrast strongly with those from siderite layers in a jasper–siderite–Fe‐chlorite banded iron‐formation from the base of the Panorama Formation (3.45 Ga), which is clearly hydrothermal in origin. The geochemical results, together with sedimentological data, strongly support: (1) deposition of Dresser Formation and Strelley Pool Chert carbonates from Archaean seawater, in part as particulate carbonate sediment; (2) biogenicity of the stromatolitic carbonates; (3) a reducing Archaean atmosphere; (4) ongoing extensive terrestrial erosion prior to ～3.45 Ga.     

A late Pleistocene progradational clastic shoreface succession in Jamaica: Implications for the preservation potential of the echinoid Leodia

A section in the Late Pleistocene Port Morant Formation of Jamaica shows a progradational deltaic succession passing from offshore muddy sands, through shoreface to foreshore deposits. The transition zone/lower shoreface has abundant Ophiomorpha burrows and contains common examples of the echinoid Leodia cf. sexiesperforata (Leske). Modern Leodia occur in shallow marine carbonate sands, and the Port Morant occurrence is the first record of abundant Leodia in the geological record. Despite their strong test construction that should give Leodia a high preservation potential, these echinoids have a poor fossil record because the environments in which they lived are rarely preserved. Consequently, the fossil record is biased towards species that occur in environments with high preservation potential.     

Fossilization of Acidophilic Microorganisms

This study examines fossil microorganisms found in iron-rich deposits in an extreme acidic environment, the Tinto River in SW Spain. Both electron microscopy (SEM and TEM) and non-destructive in situ microanalytical techniques (EDS, EMP and XPS) were used to determine the role of permineralization and encrustation in preserving microorganisms forming biofilms in the sediments. Unicellular algae were preserved by silica permineralization of their cell walls. Bacterial biofilms were preserved as molds by epicellular deposition of schwertmannite around them. In the case of fungi and filamentous algae, we observed permineralization of cell structures by schwertmannite in the sediments. The extracellular polymeric matrix around the cells was also preserved through permineralization of the fibrillar component. The process of permineralization and deposition of iron-rich precipitates present in the acidic waters of Rio Tinto served to preserve many microfossils in an oxidizing environment, in which organic compounds would not normally be expected to persist. Studies of microbial fossil formation mechanisms in modern extreme environments should focus on defining criteria to identify inorganic traces of microbial life in past environments on Earth or other planets.     

Nonphotosynthetic Bacteria and the Formation of Carbonates and Evaporites Through Time

Abstract

Nonskeletal sedimentary carbonate rocks are an important component of the Precambrian geological record, but consensus on their origin is lacking. Phanerozoic carbonates are almost exclusively biogenic products of shelly fossils, but it has generally been assumed that carbonate rocks deposited before a shelly biota evolved in the marine environment formed by direct precipitation from supersaturated solution in seawater. However, there is no unequivocal empirical evidence that calcium carbonate or dolomite precipitates directly from modern seawater, and it has been suggested that kinetic inhibitors to carbonate precipitation, related to the low concentration and activity of the carbonate ion, cation hydration and ion complexing, are especially effective in saline waters. On the other hand, there is increasing evidence that these inhibitors can be overcome through microbial mediation.

Bacteria have been implicated in calcium carbonate precipitation since the Archaean, and though best known in seas and lakes, microbial carbonates are also important in fluviatile, spring, cave, and soil environments. The mechanisms of microbial mineral precipitation appear diverse, but many bacteria exhibit an ability to change solution chemistry and control pH at the microscale, passively or actively, thereby creating the ambient conditions for both oversaturation of Ca^{2 +} and CO₃ ^{2 ?} ions, and removal of kinetic inhibitors. Bacteria dominated the ecosystems of Precambrian shallow marine environments, enhancing their potential involvement in widespread carbonate formation.

Chemical precipitation of evaporite minerals is generally accepted, but the involvement of microbes may be significant and underestimated. This review evaluates current knowledge and attempts to define some of the many questions that await resolution.     

Microfossils

Defining biosignatures, i.e. features that are indicative of past or present life, has been one of the major strategies developed over the last few years for the search of life on the early Earth and in the solar system. Current knowledge about microscopic remnants of fossil organisms, namely microfossils are reviewed, focusing on: (i) studies of recent environments used as analogues for the early Earth or extraterrestrial environments; (ii) examination of Precambrian rocks; and (iii) laboratory experiments simulating biotic and abiotic processes and resulting in the formation of genuine or pseudomicrofossils. Fossils’ preservation depends on environment and chemical composition of the primary structure, although they might undergo taphonomic processes that alter their morphology and/or composition. Altogether, these examples illustrate what can be potentially preserved during the very first stages of fossilization and what can be left in the geological record after diagenesis and metamorphism. Finally, this provides a rationale to tentatively define diagnosis criteria for microfossils or ways to look for life on Earth or in extraterrestrial environments.     

Volatile organic compounds in the salt-lake sediments of the Tibet Plateau influence prokaryotic diversity and community assembly

Extremophiles - Volatile organic compounds (VOCs) are important environmental factors because they supply nutrients for microbial cells and mediate intercellular interactions. However, few studies...     

A new occurrence of ambient inclusion trails from the ~1900‐million‐year‐old Gunflint Formation,Ontario: nanocharacterization and testing of potential formation mechanisms

Ambient inclusion trails (AITs) are tubular microstructures thought to form when a microscopic mineral crystal is propelled through a fine‐grained rock matrix. Here, we report a new occurrence of AITs from a fossilized microbial mat within the 1878‐Ma Gunflint Formation, at Current River, Ontario. The AITs are 1–15 μm in diameter, have pyrite as the propelled crystal, are infilled with chlorite and have been propelled through a microquartz (chert) or chlorite matrix. AITs most commonly originate at the boundary between pyrite‐ and chlorite‐rich laminae and chert‐filled fenestrae, with pyrite crystals propelled into the fenestrae. A subset of AITs originate within the fenestrae, rooted either within the chert or within patches of chlorite. Sulphur isotope data (³⁴S/³²S) obtained in situ from AIT pyrite have a δ³⁴S of ?8.5 to +8.0 ‰, indicating a maximum of ~30 ‰ fractionation from Palaeoproterozoic seawater sulphate (δ³⁴S ≈ +20 ‰). Organic carbon is common both at the outer margins of the fenestrae and in patches of chlorite where most AITs originate, and can be found in smaller quantities further along some AITs towards the terminal pyrite grain. We infer that pyrite crystals now found within the AITs formed via the action of heterotrophic sulphate‐reducing bacteria during early diagenesis within the microbial mat, as pore waters were becoming depleted in seawater sulphate. Gases derived from this process such as CO₂ and H₂S were partially trapped within the microbial mat, helping produce birds‐eye fenestrae, while rapid microquartz precipitation closed porosity. We propose that propulsion of the pyrite crystals to form AITs was driven by two complementary mechanisms during burial and low‐grade metamorphism: firstly, thermal decomposition of residual organic material providing CO₂, and potentially CH₄, as propulsive gases, plus organic acids to locally dissolve the microquartz matrix; and secondly, reactions involving clay minerals that potentially led to enhanced quartz solubility, plus increases in fluid and/or gas pressure during chlorite formation, with chlorite then infilling the AITs. This latter mechanism is novel and represents a possible way to generate AITs in environments lacking organic material.