Effect of salinity-altering pulsing events on soil organic carbon loss along an intertidal wetland gradient: a laboratory experiment

Salinity changes resulting from storm surge, tides, precipitation, and stormwater run-off are common in coastal wetlands. Soil microbial communities respond quickly to salinity changes, altering the rate of soil organic carbon (SOC) loss and associated biogeochemical processes. This study quantified the impact of salinity-altering pulses on SOC loss, defined as microbial respiration (CO₂ flux) at high and low tide, CH₄ flux, and dissolved OC (DOC) release, in 3 intertidal wetlands (Jacksonville, FL, USA). Intact soil cores from a freshwater tidal, brackish, and salt marsh were exposed to simulated tides and 3 salinity pulsing events during a 53-day laboratory experiment. Soil and water physio-chemical properties, nutrient release, and microbial indicators were measured. Microbial respiration was the dominate pathway of SOC loss (>97 %). Soil hydraulic conductivity was greater in brackish and salt marshes and was critical to overall soil respiration. High tide CO₂ flux was greatest in the freshwater marsh (58 % of SOC loss) and positively correlated with DOC concentration; low tide CO₂ flux was greatest in brackish and salt marshes (62 and 70 % of SOC loss, respectively) and correlated with NH₄ ⁺ and microbial biomass. The freshwater marsh was sensitive to brackish pulses, causing a 112 % increase in respiration, presumably from accelerated sulfate reduction and N-cycling. SOC loss increased in the salt marsh pulsed with freshwater, suggesting freshwater run-off may reduce a salt marsh’s ability to keep-pace with sea level rise. Increased inundation from storm surges could accelerate SOC loss in freshwater marshes, while decreasing SOC loss in brackish and salt marshes.     

闽江河口区淡水和半咸水潮汐沼泽湿地土壤产甲烷菌多样性

为认识盐度对河口潮汐沼泽湿地土壤产甲烷菌的影响,应用PCR-RFLP技术及测序分析对闽江河口区淡水-半咸水盐度梯度上分布的4个短叶茳芏潮汐沼泽湿地土壤产甲烷菌群落结构进行研究。闽江河口区短叶茳芏潮汐沼泽湿地土壤产甲烷菌群落结构受盐度影响明显,位于下洋洲和塔礁洲的短叶茳芏潮汐淡水沼泽湿地土壤产甲烷菌的香农-威纳多样性指数值分别为2.81和2.65,位于蝙蝠洲和鳝鱼滩的短叶茳芏潮汐半咸水沼泽湿地土壤产甲烷菌香农-威纳多样性指数值分别仅为2.33和2.27。系统发育分析表明:短叶茳芏沼泽湿地土壤产甲烷菌类群主要有甲烷杆菌目(Methanobacteriales),包括Methanobacterium、Methanobrevibacter和Methanobacteriaceae;甲烷微菌目(Methanomicrobiales),主要有Methanoregula,以及甲烷八叠球菌目(Methanosarcinales),主要有Methanosarcina和Methanococcoides。闽江河口区短叶茳芏潮汐淡水沼泽湿地土壤主要的优势产甲烷菌有Methanoregula、Methanosarcina和Methanobacterium,而短叶茳芏潮汐半咸水沼泽湿地土壤主要的优势产甲烷菌则转化为仅以Methanoregula为主。     

Salinity controls soil microbial community structure and function in coastal estuarine wetlands

Soil salinity acts as a critical environmental filter on microbial communities, but the consequences for microbial diversity and biogeochemical processes are poorly understood. Here, we characterized soil bacterial communities and microbial functional genes in a coastal estuarine wetland ecosystem across a gradient (~5 km) ranging from oligohaline to hypersaline habitats by applying the PCR-amplified 16S rRNA (rRNA) genes sequencing and microarray-based GeoChip 5.0 respectively. Results showed that saline soils in marine intertidal and supratidal zone exhibited higher bacterial richness and Faith's phylogenetic diversity than that in the freshwater-affected habitats. The relative abundance of taxa assigned to Gammaproteobacteria, Bacteroidetes and Firmicutes was higher with increasing salinity, while those affiliated with Acidobacteria, Chloroflexi and Cyanobacteria were more prevalent in wetland soils with low salinity. The phylogenetic inferences demonstrated the deterministic role of salinity filtering on the bacterial community assembly processes. The abundance of most functional genes involved in carbon degradation and nitrogen cycling correlated negatively with salinity, except for the hzo gene, suggesting a critical role of the anammox process in tidal affected zones. Overall, the salinity filtering effect shapes the soil bacterial community composition, and soil salinity act as a critical inhibitor in the soil biogeochemical processes in estuary ecosystems.     

滨海湿地生态系统微生物驱动的氮循环研究进展

滨海湿地生态系统介于陆地生态系统和海洋生态系统之间,其类型多种多样,环境差异极大,微生物种类丰富。近年来,随着人为氮源的大量输入,造成滨海湿地生态系统富营养化污染问题日趋严重。本文主要总结了滨海湿地生态系统微生物驱动的固氮、硝化、反硝化、厌氧氨氧化、NO_3~-还原成铵等主要氮循环过程,并综述了通过功能基因(如nifH、amoA、hzo、nirS、nirK、nrfA)检测微生物群落多样性及其环境影响因素的相关研究,旨在更好理解微生物驱动氮循环过程以去除氮,以期为减轻富营养化和危害性藻类爆发提供科学依据。     

龙凤湿地与珰奈湿地底泥细菌古菌多样性及其对环境因子的响应

【背景】城市湿地和天然湿地受到人为扰动影响的程度显著不同。【目的】研究2种不同类型湿地底泥微生物多样性及种类的差异。【方法】采集冬夏两季城市湿地(龙凤湿地)和天然湿地(珰奈湿地)的底泥样品,使用16S rRNA基因测序技术测定底泥中细菌和古菌群落结构,分析2种湿地底泥的细菌、古菌差异及环境因素与微生物的相关性。【结果】龙凤湿地底泥中的硫杆菌属(Thiobacillus)、芽孢杆菌属(Bacillus)和鞘氨醇单胞菌属(Sphingomonas)丰度显著高于珰奈湿地(P<0.05);Methanoregula在珰奈湿地底泥中的丰度高于龙凤湿地;冬季厌氧绳菌属(Anaerolinea)和甲烷八叠球菌属(Methanosarcina)在珰奈湿地底泥中的丰度显著高于龙凤湿地(P<0.05)。【结论】龙凤湿地与珰奈湿地的差异主要影响湿地底泥中参与元素循环的细菌和产甲烷古菌的丰度,人为干扰和低温会降低湿地中微生物的多样性,pH、盐分和碱性磷酸酶是显著影响微生物多样性的环境因素。     

Resting egg banks can facilitate recovery of zooplankton communities after extended exposure to saline conditions

1. Salinisation has had a major effect on the diversity of biota associated with freshwater wetlands. However, there is no information available about whether elements of the biotic communities would be able to recover if the concentration of salts within secondarily salinised wetlands was lowered to levels more typical of freshwater wetlands. 2. We tested the hypothesis that dormant eggs of zooplankton are able to persist in wetlands with elevated salinities for extended periods of time by using zooplankton communities that had developed in mesocosms exposed to either salt concentrations of 13 500 mg L^?1 or freshwater (<300 mg L^?1) for a period of 22 months. We measured the response of the zooplankton community as concentration was reduced along a gradient of decreasing salinity from 13 500 mg L^?1 to freshwater. 3. In the freshwater mesocosms, the zooplankton community was abundant and taxon rich. In comparison at the start of the experiment in the high salinity mesocosms, the zooplankton community had low abundances and very few taxa. Numbers remained low in these mesocosms until salinity was reduced to <2500 mg L^?1. Below this, there was a rapid increase in the abundance, and richness of zooplankton and communities became similar to the communities in the freshwater mesocosms. 4. These results indicate that dormant eggs of zooplankton are able to persist in wetlands exposed to high salinity levels for up to 22 months and provide a means for zooplankton communities to rapidly respond once a wetland returns to freshwater. 5. It is likely that if the underlying causes of secondary salinisation in wetlands are addressed, it will be possible to undertake restoration activities that allow the rapid return of some components of their biotic communities.     

Changes in Diversity and Functional Gene Abundances of Microbial Communities Involved in Nitrogen Fixation, Nitrification, and Denitrification in a Tidal Wetland versus Paddy Soils Cultivated for Different Time Periods

In many areas of China, tidal wetlands have been converted into agricultural land for rice cultivation. However, the consequences of land use changes for soil microbial communities are poorly understood. Therefore, we investigated bacterial and archaeal communities involved in inorganic nitrogen turnover (nitrogen fixation, nitrification, and denitrification) based on abundances and relative species richness of the corresponding functional genes along a soil chronosequence ranging between 50 and 2,000 years of paddy soil management compared to findings for a tidal wetland. Changes in abundance and diversity of the functional groups could be observed, reflecting the different chemical and physical properties of the soils, which changed in terms of soil development. The tidal wetland was characterized by a low microbial biomass and relatively high abundances of ammonia-oxidizing microbes. Conversion of the tidal wetlands into paddy soils was followed by a significant increase in microbial biomass. Fifty years of paddy management resulted in a higher abundance of nitrogen-fixing microbes than was found in the tidal wetland, whereas dominant genes of nitrification and denitrification in the paddy soils showed no differences. With ongoing rice cultivation, copy numbers of archaeal ammonia oxidizers did not change, while that of their bacterial counterparts declined. The nirK gene, coding for nitrite reductase, increased with rice cultivation time and dominated its functionally redundant counterpart, nirS, at all sites under investigation. Relative species richness showed significant differences between all soils with the exception of the archaeal ammonia oxidizers in the paddy soils cultivated for 100 and 300 years. In general, changes in diversity patterns were more pronounced than those in functional gene abundances.     

Salinity tolerance and genetic variability in freshwater and brackish Iris hexagona colonies

? Premise of the study: Saltwater intrusion is one of the most widespread environmental threats to freshwater wetlands. Iris species worldwide are important members of these plant communities. Wetland irises reproduce clonally and sexually, which permits populations to spread and disperse in benign and stressful conditions. The ability of iris populations to tolerate and adapt to elevated salinity can play an important role in determining the long-term health of wetland ecosystems. ? Methods: We used microsatellite markers to evaluate population structure and genetic diversity, and we performed a common garden experiment to examine the effect of salinity on the growth and reproduction of wild Iris hexagona collected from freshwater and brackish wetlands. ? Key results: Colonies were genetically distinct, with average to high heterozygosity (0.55-0.66) for a clonal species. Salinity had negative linear effects on leaf mass (g), clonal growth (g), root mass (g), and flower numbers, and it had nonlinear effects on seed numbers and seed mass (mg). The greatest sexual reproduction occurred in the intermediate-salinity (4 parts per thousand) treatment. Flowering phenology was delayed for 5 days in the highest-salinity treatment. ? Conclusions: We hypothesized that irises from brackish habitats would tolerate salinity better than freshwater irises would, but no difference in iris performance existed between the two habitats. The observed salinity tolerance and genetic diversity of I. hexagona indicate that populations will persist despite moderate increases in environmental salinity.     

Microbial Diversity in Hummock and Hollow Soils of Three Wetlands on the Qinghai-Tibetan Plateau Revealed by 16S rRNA Pyrosequencing

The wetlands of the Qinghai-Tibetan Plateau are believed to play an important role in global nutrient cycling, but the composition and diversity of microorganisms in this ecosystem are poorly characterized. An understanding of the effects of geography and microtopography on microbial populations will provide clues to the underlying mechanisms that structure microbial communities. In this study, we used pyrosequencing-based analysis of 16S rRNA gene sequences to assess and compare the composition of soil microbial communities present in hummock and hollow soils from three wetlands (Dangxiong, Hongyuan and Maduo) on the Qinghai-Tibetan Plateau, the world’s highest plateau. A total of 36 bacterial phyla were detected. Proteobacteria (34.5% average relative abundance), Actinobacteria (17.3%) and Bacteroidetes (11%) had the highest relative abundances across all sites. Chloroflexi, Acidobacteria, Verrucomicrobia, Firmicutes, and Planctomycetes were also relatively abundant (1–10%). In addition, archaeal sequences belonging to Euryarchaea, Crenarchaea and Thaumarchaea were detected. Alphaproteobacteria sequences, especially of the order Rhodospirillales, were significantly more abundant in Maduo than Hongyuan and Dangxiong wetlands. Compared with Hongyuan soils, Dangxiong and Maduo had significantly higher relative abundances of Gammaproteobacteria sequences (mainly order Xanthomonadales). Hongyuan wetland had a relatively high abundance of methanogens (mainly genera Methanobacterium, Methanosarcina and Methanosaeta) and methanotrophs (mainly Methylocystis) compared with the other two wetlands. Principal coordinate analysis (PCoA) indicated that the microbial community structure differed between locations and microtopographies and canonical correspondence analysis indicated an association between microbial community structure and soil properties or geography. These insights into the microbial community structure and the main controlling factors in wetlands of the Qinghai-Tibetan Plateau provide a valuable background for further studies on biogeochemical processes in this distinct ecosystem.     

Effects of experimental harvesting of an invasive hybrid cattail on wetland structure and function

Invasive plants, such as the hybrid cattail Typha × glauca, can reduce biodiversity and alter the ability of wetlands to provide critical ecosystem services, including nutrient cycling and carbon storage. Several approaches have been used to reduce Typha dominance and restore invaded wetlands, but long‐term studies assessing benefits of these restoration efforts are limited. A previous study demonstrated that aboveground harvesting of Typha × glauca stems and litter reduced Typha dominance 2 years post‐treatment in a Great Lakes coastal wetland. In the current study, we extended monitoring of experimental aboveground Typha harvest to 4 years post‐treatment and added assessments of treatment effects on soil nutrients, carbon emissions, and microbial community composition. Aboveground harvest treatment resulted in a dramatic reduction in Typha litter cover that persisted for 4 years, increased soil temperature, and increased abundance of the native plant genus Carex. However, aboveground harvest treatment did not significantly reduce Typha abundance, nor did it have significant effects on soil nutrient concentrations, carbon fluxes, or the taxonomic composition of soil microbial communities. We did observe differences in bacterial community composition between plots based on time since Typha invasion, which may indicate some legacy effects of Typha invasion. At the scale of this experiment (4 × 4 m plots), our results indicate that a single aboveground removal of Typha × glauca is not sufficient to restore a heavily invaded freshwater wetland ecosystem, and that periodic harvesting of Typha stems and litter may be required to maintain native plant abundance.     

Heterotrophic microbial activities and nutritional status of microbial communities in tropical marsh sediments of different salinities: the effects of phosphorus addition and plant species

Oligotrophic, phosphorus (P) limited herbaceous wetlands of northern Belize are being impacted by P loading from fertilizer runoff. P enrichment causes a shift in autotroph communities from a microphyte (cyanobacterial mats, CBM) to macrophyte (Eleocharis spp., Typha domingensis) dominated system. To document potential effects of P, salinity, and macrophyte species on the heterotrophic microbial community nutritional status (represented especially by specific phospholipids fatty acids and specific respiration rate), biomass and activities, we took soil samples from established P enrichment plots in replicated marshes of two salinity levels. P addition increased microbial biomass carbon (C), nitrogen (N) and P, as well as soil nutrient transformation rates (nitrogenase activity, N mineralization and immobilization, methanogenesis). The effect of plant species (Eleocharis vs Typha sites) was generally lower than the effect of P addition (CBM vs Eleocharis sites) and was most evident at the low salinity sites, where Eleocharis dominated plots had enhanced nitrogenase activity and P microbial immobilization. Salinity reduced the overall rates of microbial processes; it also weakened the positive effect of both P addition and plant species on microbial activities. Lastly, the amount of N stored in microbial cells, likely in form of osmoprotective compounds, was enhanced by salinity.     

Microbial ecoenzyme stoichiometry,nutrient limitation,and organic matter decomposition in wetlands of the conterminous United States

Microbial respiration (R_m) and ecoenzyme activities (EEA) related to microbial carbon, nitrogen, and phosphorus acquisition were measured in 792 freshwater and estuarine wetlands (representing a cumulative area of 217,480 km²) across the continental United States as part of the US EPA’s 2011 National Wetland Condition Assessment. EEA stoichiometry was used to construct models for and assess nutrient limitation, carbon use efficiency (CUE), and organic matter decomposition (? k). The wetlands were classified into ten groups based on aggregated ecoregion and wetland type. The wetlands were also assigned to least, intermediate, and most disturbed classes, based on the extent of human influences. Ecoenzyme activity related to C, N and P acquisition, R_m, CUE, and ? k differed among ecoregion–wetland types and, with the exception of C acquisition and ? k, among disturbance classes. R_m and EEA were positively correlated with soil C, N and P content (r = 0.15–0.64) and stoichiometry (r = 0.15–0.48), and negatively correlated with an index of carbon quality (r = ? 0.22 to ? 0.39). EEA stoichiometry revealed that wetlands were more often P- than N-limited, and that P-limitation increases with increasing disturbance. Our enzyme-based approach for modeling C, N, and P acquisition, and organic matter decomposition, all rooted in stoichiometric theory, provides a mechanism for modeling resource limitations of microbial metabolism and biogeochemical cycling in wetlands. Given the ease of collecting and analyzing soil EEA and their response to wetland disturbance gradients, enzyme stoichiometry models are a cost-effective tool for monitoring ecosystem responses to resource availability and the environmental drivers of microbial metabolism, including those related to global climate changes.     

Changes in biotic communities developing from freshwater wetland sediments under experimental salinity and water regimes

1. Reduction in diversity of both freshwater aquatic and terrestrial ecosystems has been attributed to salinity increase and such increases are a symptom of changes to land use. Hydrological alteration to ground and surface water are likely to be associated with salinity increase and its influence on biodiversity. However the combined effects of salinity and hydrology on aquatic biodiversity have not been elucidated fully in either field or experimental situations. 2. The effect of salinity and water regime on the biota in sediments from seven wetlands from inland south‐eastern Australia was tested experimentally using germination of aquatic plant seeds (five salinity and two water levels) and emergence of zooplankton eggs (five salinity levels). Salinity levels were <300, 1000, 2000, 3000, 5000 mg L^?1 and water regimes were damp (waterlogged) and submerged. 3. Aquatic plant germination and zooplankton hatching was not consistent for all seven wetland sediments. Four of the wetland sediments, Narran Lakes, Gwydir Wetlands, Macquarie Marshes and Billybung Lagoon showed similar responses to salinity and water regime but the other three wetland sediments from Lake Cowal, Great Cumbung Swamp and Darling Anabranch did not. 4. As salinity increased above 1000 mg L^?1 there was a decrease in the species richness and the abundance of biota germinating or hatching from sediment from four of the wetlands. 5. Salinity had a particularly strong effect in reducing germination from sediments in damp conditions when compared to the flooded conditions. In parallel, salts accumulated in the sediment in damp conditions but did not in flooded conditions. 6. There is potential for increasing salinity in freshwater rivers and wetlands to decrease the species richness of aquatic communities and thus of the wetland community as a whole, resulting in loss of wetland biodiversity. This reduction in diversity varies between wetlands and is at least partly related to hydrology. For aquatic plants the reduction in diversity will be more marked for plants germinating from seed banks at the edges of wetlands where plants are not completely submerged than for the same seed bank germinating in submerged conditions.     

盐城滨海滩涂湿地典型植物群落土壤微生物组成与结构特征

土壤微生物是生态系统维持正常结构与功能的重要组成部分,为探究盐城滩涂典型湿地土壤微生物群落结构特征,以江苏盐城滩涂互花米草、藨草、盐地碱蓬、芦苇及淤泥质光滩5种典型群落为对象,采用16S rRNA高通量测序技术分析0—10 cm(表层)、10—30 cm(中层)、30—60 cm(深层)土壤微生物多样性及群落结构。结果表明：(1)几种植物群落间,土壤微生物群落结构差异较大,主要体现在细菌群落结构的差异性,古菌群落结构差异相对较小。光滩与植物群落间,在土壤细菌种类及相对丰度上差异相对较大,互花米草群落与本土植物群落间,在微生物群落的细菌种类组成上存在较大差异;藨草群落土壤表层微生物群落结构与互花米草群落相似,深层与盐地碱蓬、芦苇群落相似。(2)同一群落不同层次土壤微生物群落结构相似,差异小于不同群落间土壤微生物群落的结构差异性;不同群落对应层次间,表深层土壤中五种群落土壤微生物多样性存在显著差异,中层土壤中五种群落微生物多样性差异不显著。总体上,植物群落类型对土壤微生物群落结构的影响大于土壤深度;与本土植物群落相比,互花米草群落土壤主要优势门微生物种类差异较小,但部分优势门微生物相对丰度...     

Seed Banks in Arid Wetlands with Contrasting Flooding,Salinity and Turbidity Regimes

Aquatic plant communities in arid zone wetlands underpin diverse fauna populations and ecosystem functions yet are relatively poorly known. Erratic flooding, drying, salinity and turbidity regimes contribute to habitat complexity, creating high spatial and temporal variability that supports high biodiversity. We compared seed bank density, species richness and community composition of aquatic plants (submergent, floating-leaved and emergent) among nine Australian arid zone wetlands. Germinable seed banks from wetlands within the Paroo and Bulloo River catchments were examined at nested scales (site, wetland, wetland type) using natural flooding and salinity regimes as factors with nondormant seed density and species richness as response variables. Salinity explained most of the variance in seed density (95%) and species richness (68%), with flooding accounting for 5% of variance in seed density and 32% in species richness. Salinity-flooding interactions were significant but explained only a trivial portion of the variance (<1%). Mean seed densities in wetlands ranged from 40 to 18,760 m⁻² and were highest in wetlands with intermediate levels of salinity and flooding. Variability of densities was high (CVs 0.61–2.66), particularly in saline temporary and fresh permanent wetlands. Below salinities of c. 30 g l⁻¹ TDS, seed density was negatively correlated to turbidity and connectivity. Total species richness of wetlands (6–27) was negatively correlated to salinity, pH and riverine connectivity. A total of 40 species germinated, comprising submergent (15 species), floating-leaved or amphibious (17 species), emergent (6 species) and terrestrial (6 species) groups. Charophytes were particularly important with 10 species (five Chara spp., four Nitella spp. and Lamprothamnium macropogon), accounting for 68% of total abundance. Saline temporary wetlands were dominated by Ruppia tuberosa, Lamprothamnium macropogon and Lepilaena preissii. Variable flooding and drying regimes profoundly altered water quality including salinity and turbidity, producing distinctive aquatic plant communities as reflected by their seed banks. This reinforces the importance of hydrology in shaping aquatic biological communities in arid systems.     

Site History and Edaphic Features Override the Influence of Plant Species on Microbial Communities in Restored Tidal Freshwater Wetlands

Restored wetland soils differ significantly in physical and chemical properties from their natural counterparts even when plant community compositions are similar, but effects of restoration on microbial community composition and function are not well understood. Here, we investigate plant-microbe relationships in restored and natural tidal freshwater wetlands from two subestuaries of the Chesapeake Bay. Soil samples were collected from the root zone of Typha latifolia, Phragmites australis, Peltandra virginica, and Lythrum salicaria. Soil microbial composition was assessed using 454 pyrosequencing, and genes representing bacteria, archaea, denitrification, methanogenesis, and methane oxidation were quantified. Our analysis revealed variation in some functional gene copy numbers between plant species within sites, but intersite comparisons did not reveal consistent plant-microbe trends. We observed more microbial variations between plant species in natural wetlands, where plants have been established for a long period of time. In the largest natural wetland site, sequences putatively matching methanogens accounted for ∼17% of all sequences, and the same wetland had the highest numbers of genes coding for methane coenzyme A reductase (mcrA). Sequences putatively matching aerobic methanotrophic bacteria and anaerobic methane-oxidizing archaea (ANME) were detected in all sites, suggesting that both aerobic and anaerobic methane oxidation are possible in these systems. Our data suggest that site history and edaphic features override the influence of plant species on microbial communities in restored wetlands.     

Land‐use influences phosphatase gene microdiversity in soils

Phosphorus cycling exerts significant influence upon soil fertility and productivity – processes largely controlled by microbial activity. We adopted phenotypic and metagenomic approaches to investigate phosphatase genes within soils. Microbial communities in bare fallowed soil showed a marked capacity to utilise phytate for growth compared with arable or grassland soil communities. Bare fallowed soil contained lowest concentrations of orthophosphate. Analysis of metagenomes indicated phoA, phoD and phoX, and histidine acid and cysteine phytase genes were most abundant in grassland soil which contained the greatest amount of NaOH‐EDTA extractable orthophosphate. Beta‐propeller phytase genes were most abundant in bare fallowed soil. Phylogenetic analysis of metagenome sequences indicated the phenotypic shift observed in the capacity to mineralise phytate in bare fallow soil was accompanied by an increase in phoD, phoX and beta‐propeller phytase genes coding for exoenzymes. However, there was a remarkable degree of genetic similarity across the soils despite the differences in land‐use. Predicted extracellular ecotypes were distributed across a greater range of soil structure than predicted intracellular ecotypes, suggesting that microbial communities subject to the dual stresses of low nutrient availability and reduced access to organic material in bare fallowed soils rely upon the action of exoenzymes.     

不同生境黑果枸杞根际与非根际土壤微生物群落多样性

研究典型生境黑果枸杞根际与非根际土壤微生物群落多样性及其与土壤理化性质间的关系,为进一步研究黑果枸杞抗逆性提供理论数据。采集新疆精河县艾比湖地区(EB)盐碱地、乌苏市(WS)路旁荒地、五家渠市(WQ)人工林带的黑果枸杞根际与非根际土壤,利用Illumina-MiSeq高通量测序技术分析细菌和真菌群落组成和多样性。结果表明:根际土壤细菌多样性高于非根际土壤(WQ除外),而根际真菌多样性低于非根际土壤。WQ非根际土壤细菌和真菌多样性均高于EB和WS;根际细菌多样性排序为EBWSWQ,根际真菌多样性排序为WSEBWQ。根际土壤优势细菌门依次是变形菌门、拟杆菌门、放线菌门、酸杆菌门,真菌优势门为子囊菌门、担子菌门。根际土壤细菌变形菌门、拟杆菌门、酸杆菌门的相对丰度高于非根际土壤,而厚壁菌在根际土壤中的丰度显著降低,真菌优势门丰度在根际土和非根际土中的变化趋势因地区而异; Haliea、Gp10、Pelagibius、Microbulbifer、假单胞菌属、Thioprofundum、Deferrisoma是根际土壤细菌优势属;多孢子菌属、支顶孢属、Corollospora、Cochlonema是根际真菌优势属。细菌、真菌优势类群(门、属)的组成以及丰富度存在地区间差异,厚壁菌门在EB地区的丰富度显著高于含盐量较低的WS、WQ;盐碱生境EB中根际土壤嗜盐细菌的丰度高于非盐碱生境(WQ、WS),如盐单胞菌属、动性球菌属、Geminicoccu、Pelagibius、Gracilimonas、Salinimicrobium等。小囊菌属是EB根际真菌的最优势属,Melanoleuca是WQ和WS的最优势属,地孔菌属、Xenobotrytis、Brachyconidiellopsis、多孢子菌属等在EB根际土壤中的丰度显著高于WQ和WS。非盐碱生境(WS和WQ)的微生物群落之间的相似性较高,并且高于与盐碱环境(EB)之间的相似性,表明土壤含盐量对微生物群落组成丰度具有重要的影响。     

Genetic Linkage of Soil Carbon Pools and Microbial Functions in Subtropical Freshwater Wetlands in Response to Experimental Warming

Rising climate temperatures in the future are predicted to accelerate the microbial decomposition of soil organic matter. A field microcosm experiment was carried out to examine the impact of soil warming in freshwater wetlands on different organic carbon (C) pools and associated microbial functional responses. GeoChip 4.0, a functional gene microarray, was used to determine microbial gene diversity and functional potential for C degradation. Experimental warming significantly increased soil pore water dissolved organic C and phosphorus (P) concentrations, leading to a higher potential for C emission and P export. Such losses of total organic C stored in soil could be traced back to the decomposition of recalcitrant organic C. Warming preferentially stimulated genes for degrading recalcitrant C over labile C. This was especially true for genes encoding cellobiase and mnp for cellulose and lignin degradation, respectively. We confirmed this with warming-enhanced polyphenol oxidase and peroxidase activities for recalcitrant C acquisition and greater increases in recalcitrant C use efficiency than in labile C use efficiency (average percentage increases of 48% versus 28%, respectively). The relative abundance of lignin-degrading genes increased by 15% under warming; meanwhile, soil fungi, as the primary decomposers of lignin, were greater in abundance by 27%. This work suggests that future warming may enhance the potential for accelerated fungal decomposition of lignin-like compounds, leading to greater microbially mediated C losses than previously estimated in freshwater wetlands.