基于转录组与翻译组的海洋食烷菌(Alcanivorax)烷烃代谢调控研究

【目的】食烷菌是海洋烃类降解优势菌,其烷烃代谢调控机制有待深入研究。本研究拟从食烷菌转录和翻译水平上认识烷烃降解的调控过程。【方法】分别以乙酸和正十六烷(C16)为唯一碳源与能源,获取柴油食烷菌(Alcanivorax dieselolei) B5菌株的转录组和翻译组数据,并整合数据计算得到该菌在2种碳源培养条件下基因的翻译效率。采用基因本体论(gene ontology, GO)和京都基因和基因组百科全书(Kyoto encyclopedia of genes and genomes, KEGG)对差异翻译和翻译效率基因进行功能和代谢通路注释。【结果】当以C16为唯一碳源与能源时,B5菌株烷烃代谢途径的关键基因在转录与翻译水平均大量提升,包括烷烃单加氧酶、细胞色素P450氧化酶、醇脱氢酶和醛脱氢酶等。KEGG富集结果表明,翻译水平显著上调基因参与了肽聚糖生物合成、脂肪酸降解、氯代烷烃降解、氧化磷酸化和生物膜形成等通路;翻译效率差异基因主要富集在铁载体非核糖体肽的生物合成、氧化磷酸化和不饱和脂肪酸的生物合成等途径。通过转录组和翻译组学的联合分析显示,为了适应烷烃氧化,B5有效地协调了转...     

Synthesis and role of glutathione in protection against oxidative stress in yeast

Summary

Glutathione (GSH) is an abundant and ubiquitous low-molecular-mass thiol with proposed roles in many cellular processes including amino acid transport, synthesis of proteins and nucleic acids, modulation of enzyme activity and metabolism of xenobiotics, carcinogens and reactive oxygen species. This review describes recent findings in the lower eukaryote Saccharomyces cerevisiae that are leading to a better understanding of the role of this peptide in eukaryotic cell metabolism. In particular, two gene products involved in maintaining the levels of reduced GSH have been studied; namely, GSH1 encoding γ-glutamylcysteine synthetase, the first step in the biosynthesis of GSH, and glutathione reductase, which recycles glutathione to its reduced form. These studies indicate that GSH is an essential metabolite in yeast, and that it is required for protection against oxidative stress produced by mitochondrial metabolism and exogenous reactive oxygen species. These findings are discussed in the light of analogous observations made in higher eukaryotes.     

Increasing maize seed weight by enhancing the cytoplasmic ADP-glucose pyrophosphorylase activity in transgenic maize plants

ADP-glucose pyrophosphorylase (AGPase) plays a key role in regulating starch biosynthesis in cereal seeds and is likely the most important determinant of seed strength. The Escherichia coli mutant glgC gene (glgC16), which encodes a highly active and allosterically insensitive AGPase, was introduced into maize (Zea mays L.) under the control of an endosperm-specific promoter. Developing seeds from transgenic maize plants showed up to 2–4-fold higher levels of AGPase activity in the presence of 5 mM inorganic phosphate (Pi). Transgenic plants with higher cytoplasmic AGPase activity under Pi-inhibitory conditions showed increases (13–25%) in seed weight over the untransformed control. In addition, in all transgenic maize plants, the seeds were fully filled, and the seed number of transgenic plants had no significant difference compared with that of untransformed control. These results indicate that increasing cytoplasmic AGPase activity has a marked effect on sink activity and, in turn, seed weight in transgenic maize plants.     

Melatonin-induced phase and dose responses in a diurnal mammal,Funambulus pennantii

ABSTRACT

Melatonin, an essential pineal hormone, acts as a marker of the circadian clock that regulates biological rhythms in animals. The effects of exogenous melatonin on the circadian system of nocturnal rodents have been extensively studied; however, there is a paucity of studies on the phase-resetting characteristics of melatonin in diurnal rodents. We studied the phase shifting effects of exogenous melatonin as a single melatonin injection (1 mg/kg) at various phases of the circadian cycle on the circadian locomotor activity rhythm in the palm squirrel, Funambulus pennantii. A phase response curve (PRC) was constructed. Adult male squirrels (N = 10) were entrained to a 12:12 h light-dark cycle (LD) in a climate-controlled chronocubicle with food and water provided ad libitum. After stable entrainment, squirrels were transferred to constant dark condition (DD) for free-running. Following stable free run, animals were administered a single dose of melatonin (1 mg/kg in 2% ethanol-phosphate buffered saline (PBS) solution) or vehicle (2% ethanol-PBS solution) at circadian times (CTs) 3 h apart to evoke phase shifts. The phase shifts elicited at various CTs were plotted to generate the PRC. A dose response curve was generated using four doses (0.5, 1, 2 and 4 mg/kg) administered at the CT of maximum phase advance. Melatonin evoked maximum phase advances at CT0 (1.23 ± 0.28 h) and maximum phase delays at CT15 (0.31 ± 0.09 h). In the dose response experiment, maximal phase shifts were evoked with 1 mg/kg. In contrast, no significant shifts were observed in control groups. Our study demonstrates that the precise timing and appropriate dose of melatonin administration is essential to maximize the amelioration of circadian rhythm–related disorders in a diurnal model.     

Role of melatonin in the control of depth distribution of <Emphasis Type="Italic">Daphnia magna</Emphasis>

Previous studies confirmed the presence of melatonin in Daphnia magna and demonstrated diurnal fluctuations in its concentration. It is also known that in several invertebrate species, melatonin affects locomotor activity. We tested the hypothesis that this hormone is involved in the regulation of Daphnia diel vertical migration (DVM) behaviour that is well recognized as the adaptive response to predation threat. Using ‘plankton organs’, we studied the effect of three concentrations of exogenous melatonin (10⁻⁵, 10⁻⁷, 10⁻⁹ M) on DVM of both female and male D. magna in the presence or absence of chemical cue (kairomone) of planktivorous fish. Depth distribution was measured six times a day, using infrared-sensitive closed circuit television cameras. Our results showed a significant effect of melatonin on the mean depth of experimental populations, both males and females, but only when melatonin was combined with fish kairomone. Females stayed, on average, closer to the surface than males, both responding to the presence of kairomone by descending to deeper strata. In the presence of exogenous melatonin and with the threat of predation, Daphnia stayed closer to the surface and their distribution was more variable than that of individuals, which were exposed to the kairomone alone. Approaching the surface in the presence of predation threat seems to be maladaptive. We postulate the role of melatonin as a stress signal inhibitor in molecular pathways of response to predation threat in Cladocera.     

褪黑素对玉米幼苗根系发育和抗旱性的影响

褪黑素是一种在生物体内广泛存在的吲哚胺类化合物,参与植物的多种生理和生化过程.近年来研究认为褪黑素可以不同程度地增强植物的抗逆性,但对其作用机理仍知之甚少.通过两种褪黑素的施用方法,详细研究了褪黑素对于玉米根系发育和抗旱性的影响.首先,采用水培根灌褪黑素的方法对玉米幼苗的根系和生长状况进行分析,结果表明施加褪黑素显著提...     

Aspetti Citologici e Genetici Dell' Invecchiamento dei Semi

Abstract

Cytological and genetic aspects of aging in seeds. — Our present knowledge on the occurrence and accumulation in seeds of chromosome structural changes and of mutations with increasing age is reviewed. It is shown that mutations are the result, rather than the cause, of seed aging and that they are due to metabolites accumulating in seeds during aging. The mechanisms of this « automutagenic effect » of metabolites are discussed.     

Arsenic Toxicity is Counteracted by Exogenous Application of Melatonin to Different Extents in Arsenic-susceptible and Arsenic-tolerant Rice Cultivars

The current study established the protective effects of exogenous melatonin in ameliorating arsenic toxicity in Khitish (arsenic-sensitive) and Muktashri (arsenic-tolerant) rice cultivars. Melatonin highly improved the overall growth performance of arsenic-treated seedlings, more prominently in the sensitive variety, Khitish. Although the level of arsenic increased in both the cultivars, Khitish accumulated comparatively higher arsenic level. However, melatonin supplementation reduced arsenic bioaccumulation and restored physiological growth attributes, as supported by lowering of electrolyte leakage, chlorophyll loss (by inducing RuBisCo), protein carbonylation, malondialdehyde accumulation, lipoxygenase (LOX), NADPH oxidase (NOX) and protease activity, and improvement of membrane stability index. Isoforms of LOX and NOX showed varietal differences during arsenic stress, both in the presence and absence of melatonin. Melatonin reduced methylglyoxal content during arsenic stress, concomitant with down-regulated gene expression and enzyme activity for glyoxalases. The nitrogen assimilation was improved via induced nitrate reductase (NR) activity and NR expression. The variable accumulation of osmolytes like proline, glycine betaine and total amino acids, concomitant with suppressed P5CS and BADH1 expression, and induced PDH was noteworthy. Antioxidant metabolites like anthocyanins, flavonoids, carotenes, xanthophylls and total phenolics were accumulated upon supplementation of melatonin in arsenic-stressed Khitish, supported by the activation of ANS and PSY genes. Melatonin lowered the ascorbic-acid oxidase activity and restored the ascorbate sink in arsenic-affected seedlings. Overall, the study revealed the potential role of exogenous melatonin in mitigating arsenic-induced injuries by strengthening osmolytes and antioxidative machinery, leading to the restoration of growth and metabolism in rice, especially in the susceptible cultivar.

     

Evoluzione Del Metabolismo Ossidativo Dei Semi di Ricino Durante la Maturazione

Abstract

Changes of respiratory metabolism in developing castor bean seeds. — The respiratory metabolism and the effect of the removal of the teguments on gas exchanges in castor bean seeds at various stages of development has been investigated. Maximal values of oxygen uptake rate were found in the period of fat accumulation. From this period on, oxidative activity steadly decreased to become, in the mature seeds, almost undetectable.

In all stages of maturation, the removal of the teguments induced a decrease of the respiratory rate of the seeds. This finding indicated that the respiratory rate of the internal tissues is not directly limited by a scarce availability of oxygen caused by a low permeability of the teguments to gases.

The value of the respiratory quotient (R.Q.) was found close to 1 in the first stages, during the growing of the endosperm while in the following period of fat accumulation it rised to 1.6, and falled again, just before the abscission of the seed, to 0.7. This fall of the R.Q. suggests that the oxidative activity of these seeds in the last stages of maturation is supported either by the oxidation of substrates more reduced than carbohydrates (probabily fats), or, partially, by the conversion of fats to sugars.     

Dose-dependent disruptive effects of melatonin,light and temperature on regeneration in the planarian Phagocata gracilis

Many critical cellular processes, including cell proliferation and tissue repair, exhibit melatonin sensitivity. We examined the effects of exogenous melatonin, photoperiod and temperature on regeneration in Phagocata gracilis, a common North American turbellarian. Planarian regeneration involves the proliferation and migration of pluripotent stem cells capable of replacing missing body components. A characteristic mass of cells (blastema) forms during planarian regeneration, and its formation, growth and differentiation provide reliable endpoints for the study of regenerative processes. We tested the effects of exogenous melatonin at two concentrations and three photoperiods on both head and tail regenerates under seasonal diurnal temperature regimes. High temperatures and melatonin treatment increased mortality in P. gracilis, and surviving melatonin-treated subjects exhibited delayed regeneration. Asymmetrical and deficient regeneration was more common in melatonin-treated, high temperature and dark treated subjects. Additionally, high temperature and melatonin induced a novel locomotor dysfunction.     

Regulatory‐associated protein of TOR (RAPTOR) alters the hormonal and metabolic composition of Arabidopsis seeds,controlling seed morphology,viability and germination potential

Target of Rapamycin (TOR) is a positive regulator of growth and development in all eukaryotes, which positively regulates anabolic processes like protein synthesis, while repressing catabolic processes, including autophagy. To better understand TOR function we decided to analyze its role in seed development and germination. We therefore performed a detailed phenotypic analysis using mutants of the REGULATORY‐ASSOCIATED PROTEIN OF TOR 1B (RAPTOR1B), a conserved TOR interactor, acting as a scaffold protein, which recruits substrates for the TOR kinase. Our results show that raptor1b plants produced seeds that were delayed in germination and less resistant to stresses, leading to decreased viability. These physiological phenotypes were accompanied by morphological changes including decreased seed‐coat pigmentation and reduced production of seed‐coat mucilage. A detailed molecular analysis revealed that many of these morphological changes were associated with significant changes of the metabolic content of raptor1b seeds, including elevated levels of free amino acids, as well as reduced levels of protective secondary metabolites and storage proteins. Most of these observed changes were accompanied by significantly altered phytohormone levels in the raptor1b seeds, with increases in abscisic acid, auxin and jasmonic acid, which are known to inhibit germination. Delayed germination and seedling growth, observed in the raptor1b seeds, could be partially restored by the exogenous supply of gibberellic acid, indicating that TOR is at the center of a regulatory hub controlling seed metabolism, maturation and germination.