Functionally distinct communities of ammonia-oxidizing bacteria along an estuarine salinity gradient

The relationship between ammonia-oxidizing bacteria (AOB) and potential nitrification rates was examined along a salinity gradient in a New England estuary in spring and late summer over 3 years. Ammonia-oxidizing bacteria abundance was estimated by measuring gene copies of the ammonia monooxygenase catalytic subunit (amoA) using real-time polymerase chain reaction. Ammonia-oxidizing bacteria abundance ranged from below detection to 6.0 x 10(7)amoA copies (gdw sediment)(-1). Mean potential nitrification rates ranged from 0.5 to 186.5 nmol N (gdw sediment)(-1) day(-1). Both AOB abundance and potential rates were significantly higher in spring than late summer. Correlations between rates and abundance varied significantly among sites, but showed site-specific ammonia oxidation kinetics related to AOB community structure. The effect of salinity on potential nitrification rates was evaluated by incubating sediment from each site under four salinity conditions (0, 5, 10 and 30 psu). At all sites, rates were generally highest in the intermediate salinity treatments, but rates at the upstream site were inhibited at high salinity, while rates at the two downstream sites were inhibited at the lowest salinity. Although salinity appears to be an important factor in determining AOB distribution, it may not be the primary factor as AOB exhibited a broad range of salinity tolerance in our experiments. Our results indicate that there are significant differences in abundance and community composition of AOB along the salinity gradient, and the differences are reflected in community function.     

Bacterial diversity,community structure and potential growth rates along an estuarine salinity gradient

Very little is known about growth rates of individual bacterial taxa and how they respond to environmental flux. Here, we characterized bacterial community diversity, structure and the relative abundance of 16S rRNA and 16S rRNA genes (rDNA) using pyrosequencing along the salinity gradient in the Delaware Bay. Indices of diversity, evenness, structure and growth rates of the surface bacterial community significantly varied along the transect, reflecting active mixing between the freshwater and marine ends of the estuary. There was no positive correlation between relative abundances of 16S rRNA and rDNA for the entire bacterial community, suggesting that abundance of bacteria does not necessarily reflect potential growth rate or activity. However, for almost half of the individual taxa, 16S rRNA positively correlated with rDNA, suggesting that activity did follow abundance in these cases. The positive relationship between 16S rRNA and rDNA was less in the whole water community than for free-living taxa, indicating that the two communities differed in activity. The 16S rRNA:rDNA ratios of some typically marine taxa reflected differences in light, nutrient concentrations and other environmental factors along the estuarine gradient. The ratios of individual freshwater taxa declined as salinity increased, whereas the 16S rRNA:rDNA ratios of only some typical marine bacteria increased as salinity increased. These data suggest that physical and other bottom-up factors differentially affect growth rates, but not necessarily abundance of individual taxa in this highly variable environment.     

Waterbird communities along the estuarine salinity gradient of the Schelde estuary, NW-Europe

The zonation of non-breeding waterbirds along the Schelde estuary (The Netherlands–Belgium), one of the longest estuaries in NW-Europe with still a complete salinity gradient, including a large freshwater tidal area, was described. Numbers of birds were counted monthly over the period October 1991 to June 1997. Highest numbers of waterbirds were observed in late autumn and winter, with annual peak numbers ranging between 150,000 and 235,000 individuals for the whole estuary. Based on a multivariate analysis different waterbird communities were observed along the salinity gradient. The polyhaline areas of the estuary were numerically dominated by the waders Oystercatcher and Dunlin. Due to the presence of a large brackish marsh in the mesohaline zone, the waterbird community in this area was dominated by the herbivores Wigeon and Greylag Goose. In the oligohaline and freshwater tidal areas, the waterbird community was dominated by duck species, with Teal and Mallard being the most important. The international importance of the Schelde estuary for waterbirds was evidenced by the fact that for 21 waterbird species the 1% level criterion, according to the Ramsar convention, was exceeded. The relation of the observed diversity and community patterns with the functional and habitat diversity of the Schelde estuary as well as the effect of recent conservation measures to preserve this habitat were discussed.     

Microbial biogeography along an estuarine salinity gradient: combined influences of bacterial growth and residence time

Shifts in bacterioplankton community composition along the salinity gradient of the Parker River estuary and Plum Island Sound, in northeastern Massachusetts, were related to residence time and bacterial community doubling time in spring, summer, and fall seasons. Bacterial community composition was characterized with denaturing gradient gel electrophoresis (DGGE) of PCR-amplified 16S ribosomal DNA. Average community doubling time was calculated from bacterial production ([(14)C]leucine incorporation) and bacterial abundance (direct counts). Freshwater and marine populations advected into the estuary represented a large fraction of the bacterioplankton community in all seasons. However, a unique estuarine community formed at intermediate salinities in summer and fall, when average doubling time was much shorter than water residence time, but not in spring, when doubling time was similar to residence time. Sequencing of DNA in DGGE bands demonstrated that most bands represented single phylotypes and that matching bands from different samples represented identical phylotypes. Most river and coastal ocean bacterioplankton were members of common freshwater and marine phylogenetic clusters within the phyla Proteobacteria, Bacteroidetes, and ACTINOBACTERIA: Estuarine bacterioplankton also belonged to these phyla but were related to clones and isolates from several different environments, including marine water columns, freshwater sediments, and soil.     

Role of biotic interactions and physical factors in determining the distribution of marsh species along an estuarine salinity gradient

Understanding the mechanisms that shape plant distribution patterns is a major goal in ecology. We investigated the role of biotic interactions (competition and facilitation) and abiotic factors in creating horizontal plant zonation along salinity gradients in the Elbe estuary. We conducted reciprocal transplant experiments with four dominant species from salt and tidal freshwater marshes at two tidal elevations. Ten individuals of each species were transplanted as sods to the opposing marsh type and within their native marsh (two sites each). Transplants were placed at the centre of 9‐m² plots along a line parallel to the river bank. In order to disentangle abiotic and biotic influences, we set up plots with and without neighbouring vegetation, resulting in five replicates per site. Freshwater species (Bolboschoenus maritimus and Phragmites australis) transplanted to salt marshes performed poorly regardless of whether neighbouring vegetation was present or not, although 50–70% of the transplants did survive. Growth of Phragmites transplants was impaired also by competition in freshwater marshes. Salt marsh species (Spartina anglica and Puccinellia maritima) had extremely low biomass when transplanted to freshwater marshes and 80–100% died in the presence of neighbours. Without neighbours, biomass of salt marsh species in freshwater marshes was similar to or higher than that in salt marshes. Our results indicate that salt marsh species are precluded from freshwater marshes by competition, whereas freshwater species are excluded from salt marshes by physical stress. Thus, our study provides the first experimental evidence from a European estuary for the general theory that species boundaries along environmental gradients are determined by physical factors towards the harsh end and by competitive ability towards the benign end of the gradient. We generally found no significant impact of competition in salt marshes, indicating a shift in the importance of competition along the estuarine gradient.     

Variation in penaeid shrimp growth rates along an estuarine salinity gradient: Implications for managing river diversions

Freshwater inflows from river diversions may affect nekton populations by altering the salinity and temperature of estuarine waters. To investigate the influence of these environmental variables on the growth and survival rates of brown shrimp Farfantepenaeus aztecus and white shrimp Litopenaeus setiferus, we conducted field experiments in May and September 2007 to expose experimental animals to the range of different combinations of salinity and water temperature that commonly occur in an estuarine environment. Growth rates for shrimp held in mesocosms for approximately 7 days were compared among four locations and three treatments; locations were identified by the dominant marsh vegetation and distance from the Gulf of Mexico (low to high salinity: Intermediate, Brackish, Saline UE = Saline Up Estuary, Saline DE = Saline Down Estuary). At each location, the treatments were replicated four times and included shallow water with additional food, shallow water without food added, and deeper water (an attempt to expose animals to lower temperatures). Our experiments were designed to test the null hypothesis that shrimp growth and survival rates did not differ by location or treatment. Both brown shrimp and white shrimp grew more slowly at the Intermediate than higher salinity locations. Potential prey (benthic infauna) biomass was relatively low at both the Intermediate and Brackish locations in May, and both shrimp species consistently grew faster in mesocosms where food was added. We conclude that reduced growth in low salinity environments is likely due to the combined effects of increased metabolic costs and less food in these areas. River diversions that reduce estuarine salinities over a large portion of available habitat during peak recruitment periods may reduce overall growth rates and shrimp productivity in the affected areas.     

The salt marshes of the Westerschelde and their role in the estuarine ecosystem

The salt marshes along the Westerschelde estuary have been influenced by various human activities of which reclamation has been a major cause for the loss of salt marsh area. The salinity gradient in the aquatic system is also mirrored in the vegetation of the salt marshes.The role of the salt marshes for the estuary as a whole is manifold but a major importance is their function as a sink for anthropogenic substances.The possible role as a carbon and mineral source for the estuary is discussed in this paper. It is estimated that the total area of salt marsh adds about 8% to the organic matter input in the estuary while the nutrient input may be as high as 25%.Communication nr. 403 of the Delta Institute, Yerseke.     

Benithic-pelagic coupling of nutrient metabolism along an estuarine eutrophication gradient

The shallow, brackish (11–18% salinity) Roskilde Fjord represents a eutrophication gradient with annual averages of chlorophyll, ranging from 3 to 25 mg chl a m^–3. Nutrient loadings in 1985 were 11.3–62.4 g N m^–2 yr^–1 and 0.4–7.3 g P m^–2 yr^–1. A simple one-layer advection-diffusion model was used to calculate mass balances for 7 boxes in the fjord. Net loss rates varied from –32.2 to 17.9 g P m^–2 yr^–1 and from –3.3 to 66.8 g N m^–2, corresponding to 74% of the external P-loading and 88% of the external N-loading to the entire estuary.Gross sedimentation rates measured by sediment traps were between 7 and 52 g p m^–2 yr^–1 and 50 and 426 g N M^–2 yr^–1, respectively. Exchangeable sediment phosphorus varied in annual average between 2.0 and 4.8 g P m^–2 and exchangeable sediment nitrogen varied from 1.9 to 33.1 g N m–1. Amplitudes in the exchangeable pools followed sedimentation peaks with delays corresponding to settling rates of 0.3 m d^–1. Short term nutrient exchange experiments performed in the laboratory with simultaneous measurements of sediment oxygen uptake showed a release pattern following the oxygen uptake, the changes in the exchangeable pools and the sedimentation peaks.The close benthic-pelagic coupling also exists for the denitrification with maxima during spring of 5 to 20 mmol N m^–2 d–1. Denitrification during the nitrogen-limited summer period suggests dependence on nitrification. Comparisons with denitrification from other shallow estuaries indicate a maximum for denitrification in estuaries of about 250 µmol N m^–2 h^–2 achieved at loading rates of about 25–125 g N m^–2 yr^–1.     

Decomposition in estuarine salt marshes: the effect of soil salinity and soil water content

The relation between decomposition rates and soil salinity and moisture conditions in tidal marshes of the Westerschelde estuary was investigated. In the first part of the study, these soil factors were experimentally manipulated in field plots which were either screened from rainwater or which received an additional weekly supply of freshwater from April to September 1989. These treatments had no clear effect on soil salinities and moisture conditions in a low marsh site. Decomposition rates of Spartina anglica leaves (kept in litterbags in the plots) also did not differ between treatments. In screened plots of a middle marsh site, decomposition rate of Elymus pycnanthus leaves decreased significantly. The effect of the experimental treatments on soil moisture content was variable, but comparatively high soil salinity values (up to 61.3) were consistently found in these plots. It is suggested that the elevated salinity levels induced the decrease in decomposition rate.In the second part of the study, cellulolytic decomposition, measured by loss of tensile strength of strips of cotton test cloth, was investigated in relation to a non-manipulated range of soil salinities (3.8–24.2), by exposing the strips in a series of tidal marshes along the salt gradient of the Westerschelde estuary. No correlation between decomposition rate and soil salinity was found. In addition, no relation was found between decomposition rate and soil water content. The results of both parts of this study lead us to the hypothesis that rate limitation of decomposition in estuarine tidal marsh soils is found at high soil salinities only.     

Elemental composition of otoliths from Atlantic croaker along an estuarine pollution gradient

Elemental compositions of otoliths of young-of-the-year Atlantic croaker Micropogonias undulatus at stations along a pollution gradient in Galveston Bay, Texas, were compared with those of sediments and livers to establish the level of consonance between otolith and habitat chemistries. Both coupled and uncoupled trends were indicated, with the bulk of the results pointing to the need for additional research to test the working hypothesis that the otolith stores a temporal record of elemental chemistry of resident waters. Lack of simple correlations between elemental concentrations in sediment or liver and in otoliths indicate that other biological and geochemical factors influence otolith composition.     

Palynomorph distribution in a mangrove ecosystem along environmental and salinity gradient: a tool for palaeoecological reconstruction

Pollen assemblages closely reflect the local vegetation that characterizes the salinity status, providing useful analogs for paleoecologxical reconstruction in regional deposits. Palynological evidences of surface sediments from the Coringa mangrove wetland were correlated with the physicochemical and sediment salinity records to observe the relationship between them. The statistical analysis of the data obtained here revealed a marked horizontal salinity gradient from north to south.. In this study, ordination (detrended correspondence analysis) of palynomorph groups has identified a salinity gradient of 1.1 to 3.0 PSU from the north to the south in the wetland. High palynomorph deposition and lower salinity are observed along channel margins due to the mixing of estuarine water during the rainy season. The mudflats along the transects show a lower diversity of plants in the pollen record and high total dissolved solids (TDS) than commonly found in the coastal wetlands. The presence of scrubby halophytic vegetation in the upper saltmarsh and oligohaline-freshwater vegetation in the low tidal saline marshes is a zonation pattern related to the localized influence of freshwater conditions. Palynomarine Index (PMI) reveals the highest freshwater/tidal inundation along Ramannapalem due to the presence of numerous riverine channels while the remaining part of the wetland has restricted tidal inundation leading to the conversion of mangrove forests to salt pans and paddy fields. Thus, the health and productivity of the mangrove ecosystem are also governed by hydrodynamics, catchment land use, water discharge in the channels, and tidal flushing.

     

Seasonal variation of nitrification along a salinity gradient in an urban estuary

A review on salinity adaptation of marine molluscsbased on mainly Russian scientific literature ispresented. The existence of two relativelyindependent systems of adaptation to extreme(resistance level) and moderate (tolerance level)changes of environmental salinity was shown. Theresistance of molluscs is based mainly on an impededwater-salt exchange with the external medium due tomantle cavity hermetization. The tolerance ofmolluscs is determined by cellular mechanisms ofadaptation. Reversible changes of protein and RNAsynthesis, alteration of the pattern of multiplemolecular forms of different enzymes, and theregulation of ionic content and cell volume wereshown to be of importance for the above mentionedmechanisms. The efficiency of resistance andtolerance adaptations to salinity changes may varyin different species and in different colourphenotypes of the same species (intrapopulationalpolymorphism). Parasites (trematodes) may suppressthe resistance of the mollusc-host to extremesalinity changes without effecting the host'scapacity for adaptive changes in salinitytolerance.     

Mitigating the greenhouse gas balance of ruminant production systems through carbon sequestration in grasslands

Soil carbon sequestration (enhanced sinks) is the mechanism responsible for most of the greenhouse gas (GHG) mitigation potential in the agriculture sector. Carbon sequestration in grasslands can be determined directly by measuring changes in soil organic carbon (SOC) stocks and indirectly by measuring the net balance of C fluxes. A literature search shows that grassland C sequestration reaches on average 5 ± 30 g C/m2 per year according to inventories of SOC stocks and -231 and 77 g C/m2 per year for drained organic and mineral soils, respectively, according to C flux balance. Off-site C sequestration occurs whenever more manure C is produced by than returned to a grassland plot. The sum of on- and off-site C sequestration reaches 129, 98 and 71 g C/m2 per year for grazed, cut and mixed European grasslands on mineral soils, respectively, however with high uncertainty. A range of management practices reduce C losses and increase C sequestration: (i) avoiding soil tillage and the conversion of grasslands to arable use, (ii) moderately intensifying nutrient-poor permanent grasslands, (iii) using light grazing instead of heavy grazing, (iv) increasing the duration of grass leys; (v) converting grass leys to grass-legume mixtures or to permanent grasslands. With nine European sites, direct emissions of N2O from soil and of CH4 from enteric fermentation at grazing, expressed in CO2 equivalents, compensated 10% and 34% of the on-site grassland C sequestration, respectively. Digestion inside the barn of the harvested herbage leads to further emissions of CH4 and N2O by the production systems, which were estimated at 130 g CO2 equivalents/m2 per year. The net balance of on- and off-site C sequestration, CH4 and N2O emissions reached 38 g CO2 equivalents/m2 per year, indicating a non-significant net sink activity. This net balance was, however, negative for intensively managed cut sites indicating a source to the atmosphere. In conclusion, this review confirms that grassland C sequestration has a strong potential to partly mitigate the GHG balance of ruminant production systems. However, as soil C sequestration is both reversible and vulnerable to disturbance, biodiversity loss and climate change, CH4 and N2O emissions from the livestock sector need to be reduced and current SOC stocks preserved.     

The benthic macrofauna along the estuarine gradient of the Schelde estuary

The intertidal benthic macrofauna of the Schelde estuary (The Netherlands and Belgium) was sampled in late autumn of 1990 at 50 stations along the whole salinity gradient (between Vlissingen and Dendermonde), including the freshwater tidal part. All stations were situated in sheltered areas with a relatively muddy sediment. Species richness, diversity and total biomass of the benthic macrofauna decreased along the salinity gradient from Vlissingen to Dendermonde, while total density showed no clear trend. Especially the oligohaline and freshwater tidal part of the Schelde estuary was characterized by a very impoverished benthic community, composed only of Oligochaeta. No other species (freshwater, marine or brackish) was observed in this part of the estuary. The marine part had a more diverse macrozoobenthos structure than that of the brackish part. Species found only in the marine zone areCerastoderma edule, Tharyx marioni, Eteone longa, Nephtys hombergii andCapitella capitata. In the brackish part of the estuary,Corophium volutator was a typical, dominant species. However, a lot of the dominant species were common in both the marine and brackish part of the Schelde estuary (e.g. Heteromastus filiformis, Pygospio elegans, Nereis diversicolor, Macoma balthica). The observed gradient in species composition and dominance is compared with some other European estuaries. The marine and brackish part of the Schelde estuary is quite similar to other european estuaries. The freshwater tidal part, however, was more impoverished.     

Shifts in the relative availability of phosphorus and nitrogen along estuarine salinity gradients

Phosphorus (P) availability in estuaries may increase with increasing salinity because sulfate from sea salt supports production of sulfide in sediments, which combines with iron (Fe) making it less available to sequester P. Increased P availability with increased salinity may promote the generally observed switch from P limitation of primary production in freshwater ecosystems to nitrogen (N) limitation in coastal marine waters. To investigate this hypothesis, we analyzed pore water from sediment cores collected along the salinity gradients of four Chesapeake Bay estuaries (the Patuxent, Potomac, Choptank, and Bush Rivers) with watersheds differing in land cover and physiography. At salinities of 1–4 in each estuary, abrupt decreases in pore water Fe²⁺ concentrations coincided with increases in sulfate depletion and PO₄ ^3? concentrations. Peaks in water column PO₄ ^3? concentrations also occur at about the same position along the salinity gradient of each estuary. Increases in pore water PO₄ ^3? concentration with increasing salinity led to distinct shifts in molar NH₄ ⁺:PO₄ ^3? ratios from >16 (the Redfield ratio characteristic of phytoplankton N:P) in the freshwater cores to <16 in the cores with salinities >1 to 4, suggesting that release of PO₄ ^3? from Fe where sediments are first deposited in sulfate-rich waters could promote the commonly observed switch from P limitation in freshwater to N limitation in mesohaline waters. Finding this pattern at similar salinities in four estuaries with such different watersheds suggests that it may be a fundamental characteristic of estuaries generally.     

Abundance and diversity of tidal marsh plants along the salinity gradient of the San Francisco Estuary: implications for global change ecology

From 2003 through 2005, tidal marsh plant species diversity and abundance on historically surveyed vegetation transects along the salinity gradient of the San Francisco Estuary were investigated to establish empirical relationships between plant distributions and environmental conditions, and furthermore to examine and predict past and future plant distribution changes. This study suggests that for most species, salinity is the primary control on plant distribution. Thus, ongoing changes in estuarine conditions (increasing sea level and salinity) are resulting in a complex mix of plant distribution changes. On the low marsh, where sediment salinity is similar to that of ambient water, halophytic species are replacing salt-intolerant taxa. However, on marsh plains, where increased tidal flooding is moderating high salinity (concentrated by evaporation), halophytic “high marsh” species are being replaced by salt-intolerant “low marsh” taxa. Thus, future changes in plant distributions will hinge on whether marsh sediment accumulation keeps pace with sea level rise.     

Richness and diversity of bacterioplankton species along an estuarine gradient in Moreton Bay, Australia

Bacterioplankton community diversity was investigated in the subtropical Brisbane River-Moreton Bay estuary, Australia (27 degrees 25 minutes S, 153 degrees 5 minutes E). Bacterial communities were studied using automated rRNA intergenic spacer analysis (ARISA), which amplifies 16S-23S ribosomal DNA internally transcribed spacer regions from mixed-community DNA and detects the separated products on a fragment analyzer. Samples were collected from eight sites throughout the estuary and east to the East Australian Current (Coral Sea). Bacterioplankton communities had the highest operational taxonomic unit (OTU) richness, as measured by ARISA at eastern bay stations (S [total richness] = 84 to 85 OTU) and the lowest richness in the Coral Sea (S = 39 to 59 OTU). Richness correlated positively with bacterial abundance; however, there were no strong correlations between diversity and salinity, NO(3)(-) and PO(4)(3-) concentrations, or chlorophyll a concentration. Bacterioplankton communities at the riverine stations were different from communities in the bay or Coral Sea. The main differences in OTU richness between stations were in taxa that each represented 0.1% (the detection limit) to 0.5% of the total amplified DNA, i.e., the "tail" of the distribution. We found that some bacterioplankton taxa are specific to distinct environments while others have a ubiquitous distribution from river to sea. Bacterioplankton richness and diversity patterns in the estuary are potentially a consequence of greater niche availability, mixing of local and adjacent environment communities, or intermediate disturbance. Furthermore, these results contrast with previous reports of spatially homogeneous bacterioplankton communities in other coastal waters.     

青藏高原高寒草甸生态系统净二氧化碳交换量特征

高寒草甸是青藏高原广泛分布的植被类型之一,面积约120万km2,地处青藏高原腹地的当雄草原站即位于该类植被的典型分布区。以2003年8~10月中旬在该站用涡度相关法连续观测的CO2通量数据资料为基础,分析了高寒草甸生态系统8~10月份净二氧化碳交换量(NEE)的日变化规律,及其与光合有效辐射、降水、温度等环境因子之间的关系。结果表明,8~10月份的日均NEE有明显的日变化,表现为单峰型,通常在地方时11:00~12:00左右达到碳吸收的最大值,平均为-0.2680mgCO2/(m2·s)(-6.0800μmolCO2/(m2·s))。白天的NEE与光合有效辐射之间符合很好的直角双曲线关系,表观量子产额平均为0.0203μmolCO2/μmolPAR,表观最大光合速率平均为9.7411μmolCO2/(m2·s)。夜晚的NEE与5cm地温有很好的指数函数关系。     

Patterns of fungal diversity and composition along a salinity gradient

Estuarine salinity gradients are known to influence plant, bacterial and archaeal community structure. We sequenced 18S rRNA genes to investigate patterns in sediment fungal diversity (richness and evenness of taxa) and composition (taxonomic and phylogenetic) along an estuarine salinity gradient. We sampled three marshes—a salt, brackish and freshwater marsh—in Rhode Island. To compare the relative effect of the salinity gradient with that of plants, we sampled fungi in plots with Spartina patens and in plots from which plants were removed 2 years prior to sampling. The fungal sediment community was unique compared with previously sampled fungal communities; we detected more Ascomycota (78%), fewer Basidiomycota (6%) and more fungi from basal lineages (16%) (Chytridiomycota, Glomeromycota and four additional groups) than typically found in soil. Across marshes, fungal composition changed substantially, whereas fungal diversity differed only at the finest level of genetic resolution, and was highest in the intermediate, brackish marsh. In contrast, the presence of plants had a highly significant effect on fungal diversity at all levels of genetic resolution, but less of an effect on fungal composition. These results suggest that salinity (or other covarying parameters) selects for a distinctive fungal composition, and plants provide additional niches upon which taxa within these communities can specialize and coexist. Given the number of sequences from basal fungal lineages, the study also suggests that further sampling of estuarine sediments may help in understanding early fungal evolution.