Nitrogen cycling in two riparian forest soils under different geomorphic conditions

At the floodplain scale, spatial pattern and successional development of riparian vegetation are under the control of geomorphic processes. The geomorphic and hydraulic characteristics of stream channels affect the sorting of organic material and inorganic sediment through erosion/sedimentation during floods. In turn, the proportion of fine sediments fractions differs by location within a given community of riparian forest succession. In this paper we tested the effect of geomorphic features of floodplains, through soil grain size sorting, on the nitrogen cycling in riparian forest soils. Two typical riparian forests formed by vertical accretion deposits from repeated addition of sediments from overbank flow have been chosen along the River Garonne, southwest France. These riparian forests had equivalent vegetation, flood frequency and duration, differing only in soil grain size composition: one riparian forest had sandy soils and the other had loamy soils. The evolution of the main soil physical and chemical parameters as well as denitrification (DNT), N uptake (N_U) and mineralization (N_M) rates were measured monthly over a period of 13 months in the two study sites. The loamy riparian forest presented a better physical retention of suspended matter during floods. Moreover,in situ denitrification rates (DNT) and N uptake by plants (N_U) measured in the loamy riparian forest soils were significantly greater than in the sandy soils. Although DNT and N_U could be in competition for available nitrogen, the peak rates of these two processes did not occur at the same period of the year, N_U being more important during the dry season when DNT was minimum, while DNT rates were maximum following the spring floods. N retention by uptake (N_U) and loss by DNT represented together the equivalent of 32% of total organic nitrogen deposited during floods on the sandy riparian forest soils and 70% on the loamy ones. These significant differences between the two sites show that, at the landscape level, one should not estimate the rates of N_U and DNT, in riparian forests soils only on the basis of vegetation, but should take also into account the geomorphic features of the floodplain.     

Global trends and uncertainties in terrestrial denitrification and N2O emissions

Soil nitrogen (N) budgets are used in a global, distributed flow-path model with 0.5° × 0.5° resolution, representing denitrification and N₂O emissions from soils, groundwater and riparian zones for the period 1900–2000 and scenarios for the period 2000–2050 based on the Millennium Ecosystem Assessment. Total agricultural and natural N inputs from N fertilizers, animal manure, biological N₂ fixation and atmospheric N deposition increased from 155 to 345 Tg N yr⁻¹ (Tg = teragram; 1 Tg = 10¹² g) between 1900 and 2000. Depending on the scenario, inputs are estimated to further increase to 408–510 Tg N yr⁻¹ by 2050. In the period 1900–2000, the soil N budget surplus (inputs minus withdrawal by plants) increased from 118 to 202 Tg yr⁻¹, and this may remain stable or further increase to 275 Tg yr⁻¹ by 2050, depending on the scenario. N₂ production from denitrification increased from 52 to 96 Tg yr⁻¹ between 1900 and 2000, and N₂O–N emissions from 10 to 12 Tg N yr⁻¹. The scenarios foresee a further increase to 142 Tg N₂–N and 16 Tg N₂O–N yr⁻¹ by 2050. Our results indicate that riparian buffer zones are an important source of N₂O contributing an estimated 0.9 Tg N₂O–N yr⁻¹ in 2000. Soils are key sites for denitrification and are much more important than groundwater and riparian zones in controlling the N flow to rivers and the oceans.     

Surface–subsurface water exchange rates along alluvial river reaches control the thermal patterns in an Alpine river network

1. Water temperature is a key characteristic of stream ecosystems that is gaining scientific and managerial relevance as maximum temperatures in aquatic ecosystems increase worldwide.
2. To assess the effect of surface–subsurface water exchange on stream water temperature patterns, four alluvial reaches in the Tagliamento River basin (NE Italy), constrained by geomorphic knickpoints at the upper and lower end, and two to four hyporheic flowpaths within each reach, were continuously studied during summer 2007 and winter 2007–08. Water temperature was continuously monitored at the upstream and downstream knickpoints of the floodplains, as well as at discrete upwelling areas within each reach. Discharge and vertical hydraulic gradient were measured along the alluvial reaches, and the residence time and chemistry of upwelling water were assessed four times during the study.
3. Discharge variation along the study reaches revealed that massive hyporheic exchange occurred in all sites, ranging from 21% in reach 2–52% in reach 1. End member mixing analysis showed little influence of ground water, as almost all upwelling water was freshly infiltrated hyporheic water. Importantly, hyporheic exchange flows shaped surface temperature at the upwelling locations in all study reaches, providing potential thermal refugia for aquatic biota. At sites with highest hyporheic flow rates, net temperature change was also reflected at the floodplain scale.
4. The magnitude of the thermal change along a hyporheic flowpath was not related to the flowpath length but to the estimated ²²²Rn water age. Reduction in the diel thermal amplitude by hyporheic flows rather than net temperature change, reduced temperature extremes. Therefore, restoration activities to create thermal refugia should consider the role of hyporheic flows and enhance the exchange between surface and hyporheic waters.     

Flow and retention of particulate organic matter in riparian fluvial habitats under different climates

The flow and retention of particulate organic matter were compared in two fluvial systems under different climates: the French upper Rhone (temperate climate) and the lower Moulouya in Morocco (Mediterranean climate). In both systems, a breakdown gradient was observed. This gradient was correlated with water motion, oxygen content, richness in hyphomycete species and occurrence of their mycelia and spores on submerged leaves, invertebrate density and consumption by shredders.U.A. CNRS 1451 Ecologie des Eaux Douces et des Grands FleuvesU.A. CNRS 1451 Ecologie des Eaux Douces et des Grands Fleuves     

Projected changes in plant species richness and extent of riparian vegetation belts as a result of climate‐driven hydrological change along the Vindel River in Sweden

1. Riparian plant communities are primarily structured by the hydrological regime of the stream. Models of climate change predict increased temperatures and changed patterns of precipitation that will alter the flow of rivers and streams with consequences for riparian communities. In boreal regions of Europe, stream flows will exhibit earlier spring‐flood peaks of lower magnitude, lower summer flows and higher flows in autumn and winter. We quantified the effects of predicted hydrological change on riparian plant species richness, using four different scenarios for the free‐flowing Vindel River in northern Sweden. 2. We calculated the hydrological niche of vegetation belts by relating the occurrence of species and vegetation belts to data on flood duration for 10 years preceding the vegetation survey. We then used the flood duration predicted for 2071–2100 to estimate expected changes in the extent of each vegetation belt. Using species accumulation curves, we then predicted changes in plant species richness as a result of changes in extent. 3. The two most species‐rich vegetation belts, riparian forest and willow shrub, were predicted to decrease most in elevational extent, up to 39 and 32%, respectively. The graminoid belt below the shrub belt will mainly shift upwards in elevation while the amphibious vegetation belt at the bottom of the riparian zone increases in size. 4. In the Vindel River, the riparian forest and willow shrub zone will lose most species, with reductions of 5–12% and 1–13% per site, respectively, depending on the scenario. The predicted loss from the entire riparian zone is lower, 1–9%, since many species occur in more than one vegetation belt. More extensive species losses are expected in the southern boreal zone for which much larger spring‐flood reductions are projected. 5. With an expected reduction in area of the most species‐rich belts, it becomes increasingly important to manage and protect riparian zones to alleviate other threats, thus minimising the risk of species losses. Restoring river and stream reaches degraded by other impacts to gain riparian habitat is another option to avoid species losses.     

Colder soils in a warmer world: A snow manipulation study in a northern hardwood forest ecosystem

In this special section of Biogeochemistry, we present results from asnow manipulation experiment in the northernhardwood forest ecosystem at the Hubbard BrookExperimental Forest in the White Mountains ofNew Hampshire, U.S.A. Snow is important as aninsulator of forest soils. Later developmentof snowpacks, as may occur in a warmer climate,may result in increases in soil freezing (i.e.colder soils in a warmer world) and could causechanges in fine root and microbial mortality,hydrologic and gaseous losses of nitrogen (N),and the acid-base status of drainage water. Inour study, we kept soils snow free by shovelinguntil early February during the mild winters of1997/1998 and 1998/1999. The treatment producedmild, but persistent soil freezing and inducedsurprisingly significant effects on rootmortality, soil nitrate (NO₃ ^–) levelsand hydrologic fluxes of C, N and P. In thisspecial section we present four papersaddressing, (1) soil temperature and moistureresponse to our snow manipulation treatment(Hardy et al.), (2) theresponse of fine root dynamics to treatment(Tierney et al.), (3) theresponse of soil inorganic N levels, insitu N mineralization and nitrification,denitrification and microbial biomass to thetreatment (Groffman et al.)and (4) soil solution concentrations and fluxesof C, N and P (Fitzhugh et al.). In this introductory paper we: (1)review the literature on snow effects on forestbiogeochemistry, (2) introduce our manipulationexperiment and (3) summarize the resultspresented in the other papers in this issue.     

未来气候变化对四川盆地生命地带的影响模拟

根据未来气候变化的趋势 ,利用生态信息系统 (EIS)技术 ,采用修正后的Holdridge生命地带模型 ,并结合海拔因素 ,模拟了四川盆地在未来气候 5种水热条件下可能出现的生命地带类型。结果表明 ,随着未来全球气温的升高 ,四川盆地内森林地带总分布面积将增加 ,高山草甸或冻原地带分布面积将减少 ,亚热带荒漠地带将出现 ,整个生命地带的分布将会沿东南至西北方向发生类型和地界的推移     

Projected changes in mineral soil carbon of European croplands and grasslands, 1990–2080

We present the most comprehensive pan‐European assessment of future changes in cropland and grassland soil organic carbon (SOC) stocks to date, using a dedicated process‐based SOC model and state‐of‐the‐art databases of soil, climate change, land‐use change and technology change. Soil carbon change was calculated using the Rothamsted carbon model on a European 10 × 10′ grid using climate data from four global climate models implementing four Intergovernmental Panel on Climate Change (IPCC) emissions scenarios (SRES). Changes in net primary production (NPP) were calculated by the Lund–Potsdam–Jena model. Land‐use change scenarios, interpreted from the narratives of the IPCC SRES story lines, were used to project changes in cropland and grassland areas. Projections for 1990–2080 are presented for mineral soil only. Climate effects (soil temperature and moisture) will tend to speed decomposition and cause soil carbon stocks to decrease, whereas increases in carbon input because of increasing NPP will slow the loss. Technological improvement may further increase carbon inputs to the soil. Changes in cropland and grassland areas will further affect the total soil carbon stock of European croplands and grasslands. While climate change will be a key driver of change in soil carbon over the 21st Century, changes in technology and land‐use change are estimated to have very significant effects. When incorporating all factors, cropland and grassland soils show a small increase in soil carbon on a per area basis under future climate (1–7 t C ha^?1 for cropland and 3–6 t C ha^?1 for grassland), but when the greatly decreasing area of cropland and grassland are accounted for, total European cropland stocks decline in all scenarios, and grassland stocks decline in all but one scenario. Different trends are seen in different regions. For Europe (the EU25 plus Norway and Switzerland), the cropland SOC stock decreases from 11 Pg in 1990 by 4–6 Pg (39–54%) by 2080, and the grassland SOC stock increases from 6 Pg in 1990 to 1.5 Pg (25%) under the B1 scenario, but decreases to 1–3 Pg (20–44%) under the other scenarios. Uncertainty associated with the land‐use and technology scenarios remains unquantified, but worst‐case quantified uncertainties are 22.5% for croplands and 16% for grasslands, equivalent to potential errors of 2.5 and 1 Pg SOC, respectively. This is equivalent to 42–63% of the predicted SOC stock change for croplands and 33–100% of the predicted SOC stock change for grasslands. Implications for accounting for SOC changes under the Kyoto Protocol are discussed.     

Distinct microbial communities associated with buried soils in the Siberian tundra

Cryoturbation, the burial of topsoil material into deeper soil horizons by repeated freeze–thaw events, is an important storage mechanism for soil organic matter (SOM) in permafrost-affected soils. Besides abiotic conditions, microbial community structure and the accessibility of SOM to the decomposer community are hypothesized to control SOM decomposition and thus have a crucial role in SOM accumulation in buried soils. We surveyed the microbial community structure in cryoturbated soils from nine soil profiles in the northeastern Siberian tundra using high-throughput sequencing and quantification of bacterial, archaeal and fungal marker genes. We found that bacterial abundances in buried topsoils were as high as in unburied topsoils. In contrast, fungal abundances decreased with depth and were significantly lower in buried than in unburied topsoils resulting in remarkably low fungal to bacterial ratios in buried topsoils. Fungal community profiling revealed an associated decrease in presumably ectomycorrhizal (ECM) fungi. The abiotic conditions (low to subzero temperatures, anoxia) and the reduced abundance of fungi likely provide a niche for bacterial, facultative anaerobic decomposers of SOM such as members of the Actinobacteria, which were found in significantly higher relative abundances in buried than in unburied topsoils. Our study expands the knowledge on the microbial community structure in soils of Northern latitude permafrost regions, and attributes the delayed decomposition of SOM in buried soils to specific microbial taxa, and particularly to a decrease in abundance and activity of ECM fungi, and to the extent to which bacterial decomposers are able to act as their functional substitutes.     

Patterns of differential introgression in a salamander hybrid zone: inferences from genetic data and ecological niche modelling

Hybrid zones have yielded considerable insight into many evolutionary processes, including speciation and the maintenance of species boundaries. Presented here are analyses from a hybrid zone that occurs among three salamanders –Plethodon jordani, Plethodon metcalfi and Plethodon teyahalee– from the southern Appalachian Mountains. Using a novel statistical approach for analysis of non‐clinal, multispecies hybrid zones, we examined spatial patterns of variation at four markers: single‐nucleotide polymorphisms (SNPs) located in the mtDNA ND2 gene and the nuclear DNA ILF3 gene, and the morphological markers of red cheek pigmentation and white flecks. Concordance of the ILF3 marker and both morphological markers across four transects is observed. In three of the four transects, however, the pattern of mtDNA is discordant from all other markers, with a higher representation of P. metcalfi mtDNA in the northern and lower elevation localities than is expected given the ILF3 marker and morphology. To explore whether climate plays a role in the position of the hybrid zone, we created ecological niche models for P. jordani and P. metcalfi. Modelling results suggest that hybrid zone position is not determined by steep gradients in climatic suitability for either species. Instead, the hybrid zone lies in a climatically homogenous region that is broadly suitable for both P. jordani and P. metcalfi. We discuss various selective (natural selection associated with climate) and behavioural processes (sex‐biased dispersal, asymmetric reproductive isolation) that might explain the discordance in the extent to which mtDNA and nuclear DNA and colour‐pattern traits have moved across this hybrid zone.     

Fate of chloramphenicol in tobacco tissue culture under various light regimes

Abstract. Non-differentiated tissue cultures (calli) and differentiated tissues (shoots) of tobacco were found to differ in their sensitivity to chloramphenicol (CAP). This phenomenon is especially manifested in darkness and in an illumination regime lacking u.v. and blue light. When the latter are included, CAP's photodegradation products are shown to appear. It seems that one of the main photodegradation pathways is through the production of p -nitro-benzaldehyde ( p -NBA) which is further degraded. The possibility that either acetylation or physiological nitration of CAP is the cause for the differential tolerance was eliminated. The chromatographic and radiographic results indicate that in vivo degradation of CAP occurs both in calli and in shoot cultures. One of the in vivo degradation products is CAP-base.     

Global change and biological soil crusts: effects of ultraviolet augmentation under altered precipitation regimes and nitrogen additions

Biological soil crusts (BSCs), a consortium of cyanobacteria, lichens, and mosses, are essential in most dryland ecosystems. As these organisms are relatively immobile and occur on the soil surface, they are exposed to high levels of ultraviolet (UV) radiation and atmospheric nitrogen (N) deposition, rising temperatures, and alterations in precipitation patterns. In this study, we applied treatments to three types of BSCs (early, medium, and late successional) over three time periods (spring, summer, and spring–fall). In the first year, we augmented UV and altered precipitation patterns, and in the second year, we augmented UV and N. In the first year, with average air temperatures, we saw little response to our treatments except quantum yield, which was reduced in dark BSCs during one of three sample times and in Collema BSCs two of three sample times. There was more response to UV augmentation the second year when air temperatures were above average. Declines were seen in 21% of the measured variables, including quantum yield, chlorophyll a, UV‐protective pigments, nitrogenase activity, and extracellular polysaccharides. N additions had some negative effects on light and dark BSCs, including the reduction of quantum yield, β‐carotene, nitrogenase activity, scytonemin, and xanthophylls. N addition had no effects on the Collema BSCs. When N was added to samples that had received augmented UV, there were only limited effects relative to samples that received UV without N. These results indicate that the negative effect of UV and altered precipitation on BSCs will be heightened as global temperatures increase, and that as their ability to produce UV‐protective pigments is compromised, physiological functioning will be impaired. N deposition will only ameliorate UV impacts in a limited number of cases. Overall, increases in UV will likely lead to lowered productivity and increased mortality in BSCs through time, which, in turn, will reduce their ability to contribute to the stability and fertility of soils in dryland regions.     

Global assessment of coral bleaching and required rates of adaptation under climate change

Elevated ocean temperatures can cause coral bleaching, the loss of colour from reef‐building corals because of a breakdown of the symbiosis with the dinoflagellate Symbiodinium. Recent studies have warned that global climate change could increase the frequency of coral bleaching and threaten the long‐term viability of coral reefs. These assertions are based on projecting the coarse output from atmosphere–ocean general circulation models (GCMs) to the local conditions around representative coral reefs. Here, we conduct the first comprehensive global assessment of coral bleaching under climate change by adapting the NOAA Coral Reef Watch bleaching prediction method to the output of a low‐ and high‐climate sensitivity GCM. First, we develop and test algorithms for predicting mass coral bleaching with GCM‐resolution sea surface temperatures for thousands of coral reefs, using a global coral reef map and 1985–2002 bleaching prediction data. We then use the algorithms to determine the frequency of coral bleaching and required thermal adaptation by corals and their endosymbionts under two different emissions scenarios. The results indicate that bleaching could become an annual or biannual event for the vast majority of the world's coral reefs in the next 30–50 years without an increase in thermal tolerance of 0.2–1.0°C per decade. The geographic variability in required thermal adaptation found in each model and emissions scenario suggests that coral reefs in some regions, like Micronesia and western Polynesia, may be particularly vulnerable to climate change. Advances in modelling and monitoring will refine the forecast for individual reefs, but this assessment concludes that the global prognosis is unlikely to change without an accelerated effort to stabilize atmospheric greenhouse gas concentrations.     

Occurrence of Acremonium endophytes in wild populations of Lolium spp. in European countries and a relationship between level of infection and climate in France

Infection with endophytic fungi (Acremonium spp.) was detected in wild populations of Lolium spp. from 15 of 20 European countries. Of 523 populations examined, 38% contained no infection, 48% contained 1–50% infection and 14% contained 51–100% infection. Level of infection was slightly but significantly associated with abundance of Lolium in the sward. For data from France, significant correlations were obtained between level of infection and five climate variables; the highest correlations were with evapotranspiration (0.66, P < 0.001) and water supply deficit (-0.66, P < 0.001). A model established using multiple regression analysis and incorporating five climatic variables, accounted for 56% of total variation; water supply deficit alone accounted for 43%. These climatic variables were shown by geostatistical analysis to account for a spatial structure in infection level. Groups of Lolium populations with a high level of infection were located mostly in Mediterranean regions, where stress from summer drought is common.     

Microbial biomass and growth kinetics of microorganisms in chernozem soils under different land use modes

The carbon content of microbial biomass and the kinetic characteristics of microbial respiration response to substrate addition have been estimated for chernozem soils under different land use: arable lands used for 10, 46, and 76 years, mowed meadow, natural forest, and forest shelter belt. Microbial biomass and the content of microbial carbon in humus (C_mic /C_org) decreased in the following order: soils under forest cenoses—mowed meadow—10-year arable land—46- and 75-year arable land. The amount of microbial carbon in the long-plowed horizon was 40% of its content in the upper horizon of natural forest. Arable soils were characterized by a lower metabolic diversity of microbial community and by the highest portion of microorganisms able to grow directly on glucose introduced into soil. The effects of different scenarios of carbon sequestration in soil on the amounts and activity of microbial biomass are discussed.     

Order and disorder in the river continuum: the contribution of continuity and connectivity to floodplain meadow biodiversity

Aim Aspects of connectivity and continuity operating in the River Meuse were analysed for their contribution to the biodiversity of the floodplain. From this analysis of the diversity and composition of the meadow communities, we aimed to derive effective biodiversity conservation strategies. Location The River Meuse is one of the larger rivers in the European Western Plains ecoregion. The alluvial plains of the river have a long history of cultivation, and for these plains the floodplain meadow vegetation is a highly appreciated and valuable nature conservation asset. Method We sampled floodplain meadows from 400 km of the six geomorphic reaches of the middle to lower course of the River Meuse. For each, 50 vascular plant relevés were recorded, representing the spectrum of floodplain meadow communities of that reach. Beta diversity was calculated to quantify similarity in species pools between the reaches. A dissimilarity formula was used to determine the turnover between the reaches, and these dissimilarities were compared with a Mantel test to detect whether species composition of the floodplain meadows exhibited connectivity and continuity between the reaches. Species richness for the floodplain vegetation data of the reaches was compared with data for riparian invertebrate communities. The vegetation data sets were ordinated using detrended correspondence analysis (DCA) to reveal patterns in the floodplain meadow species composition, and the DCA axes were related to plant functional groups and population strategies. The axis scores of the species and plots were linked to river and plant species traits. Results We did not observe an overall continuity trend in similarity, nor one in diversity in a downstream direction. Lateral connectivity was highlighted by the dissimilarity between the reaches and in the influxes of species from adjacent ecoregions. The DCA ordination showed statistically significant separations between reaches and between the plant functional groups. The second DCA axis related to the longitudinal gradient of the river, whereas the first axis showed stronger correlations with river and plant species traits. We termed this axis the ‘disorder axis’. Plant invaders and avoiders are located at the left side of the disorder axis, whereas the true river‐adapted categories of resisters and endurers are at the right extremity. Contributions to the disorder were identified in terms of connectivity with adjacent ecoregions and the physical disturbance regime of natural and anthropogenic perturbations, resulting in community changes between the reaches. Main conclusions We concluded that a single overall strategy for biodiversity conservation of the river or its floodplains is not feasible. Strategies can, however, be derived for separate river reaches based on functional groups in the communities, the disorder characteristics of the reach, and the influence of surrounding ecoregions.     

Effects of urine on soil microbial biomass,methanogenesis, nitrification and denitrification in grassland soils

Urine was added under controlled conditions to intact turfs taken from long-term permanent pasture on clay loam and sandy loam soils in South West England. Methane exchanges were small (<+/−0.03 μg CH₄ m^-2 min^-1) and overall absorption equalled or exceeded emission in both soils. On the clay loam, wetting with water or urine increased soil microbial biomass C and N contents by about 20% but there was no specific effect of urine. Urine, however, caused an increase in soil respiration of >50% and the average increase was greater for cow's urine (30.8 mg CO₂ m^-2 min^-1) than for an artificial urine (20.1 mg CO₂ m^-2 min^-1). Emissions of nitric and nitrous oxides following urine application were substantial (on average 0.36 μg NO-N and 29 μg N₂O-N m^-2 min^-1) but short lived (<40 days). The high levels of ammonium found in the urine treated soils (>200 mg NH₄ ⁺-N kg^-1) were nitrified to nitrate over a period of 42 days. Qualitative changes in the soil microbial biomass were evidently not related to biomass size. Relationships between trace gas emissions and soil processes are discussed. ei]Section editor: R Merckx     

Mortality of developing floodplain forests subjected to a drying climate and water extraction

River regulation and water extraction have altered the hydrology of rivers resulting in substantial changes to forest structure and the dieback of floodplain forests globally. Forest mortality, due to water extraction, is likely to be exacerbated by climate change-induced droughts. In 1965, a plantation trial was established within a natural floodplain forest to examine the effect of planting density on timber production. We used data from this trial to investigate the effect of initial stand density on the structure and dynamics of Eucalyptus camaldulensis (Dehnh.) forests. Highest density stands (8000 trees ha⁻¹) were dominated by many slender trees, mostly<10 cm in diameter, whereas the lowest density stands produced size distributions with a wider range of stem diameters and higher mean and maximum stem diameter. After 1996, the study area experienced a sharp decline in water availability due to a substantial lowering of the water table, reduced flooding frequency, a pronounced rainfall deficit and increased maximum temperatures. The drought coincided with a dramatic increase in mortality in the high-density stands, yet remained little changed in low-density treatments. Our results highlight the importance of initial stand density as a key determinant of the development of forest structure. Early thinning of high-density stands is one component of a broader management approach to mitigate impacts of human-induced drought and water extraction on developing floodplain forests.