Molecular structure of collagen in solution: comparison of types I,II, III and V

Physical properties of pepsin-solubilized types I, II, III and V collagen have been measured in acid solution at 10°C. Our results indicate that types I, II and III collagen molecules undergo a monomer-aggregate equilibrium in solution whereas type V molecules appear to attract each other but do not undergo a similar monomer-aggregate equilibrium. Interstitial collagen monomers (I, II and III) have molecular weights between $\text{280 × 10}{}^3\text{and 289 × 10}{}^3$, translational diffusion coefficients between $\text{0.820 × 10}{}^{\mathrm{?7}}\text{and 0.845 × 10}{}^{\mathrm{?7}}\text{cm}{}^2\text{s}{}^{\mathrm{?1}}$ and particle scattering factors at an angle of 175.5° and wavelength of 633 nm between 0.430 and 0.460. Type V collagen molecules after pepsin digestion were found to have a higher molecular weight ($\text{307 × 10}{}^3$), similar translational diffusion coefficient ($\text{0.860 × 10}{}^{\mathrm{?7}}\text{cm}{}^2\text{s}{}^{\mathrm{?1}}$) and similar particle scattering factor at 175.5° (0.440) to the interstitial collagens. Theoretical bead models are discussed and suggest that changes in the translational diffusion coefficient were less sensitive to bending motions than were changes in the particle scattering factor at 175.5°C. Bend angles of 50° were shown to increase the particle scattering factor by 5% whereas a bend angle of greater than 125° was required to increase the translational diffusion coefficient by 5%. Models developed from idealized shapes seen by electron microscopy of rotary shadowed collagen molecules agreed best with experimental laser light scattering measurements when the bend angles were less than 90°.     

Corneal and scleral type I collagens: analyses of physical properties and molecular flexibility

The physical properties of type I collagen were studied by electron microscopy of rotary shadowed collagen molecules and laser light scattering techniques. The physical properties, molecular structure and flexibility of type I collagen molecules from two structurally and functionally different connective tissues, cornea and sclera, were similar when measured in HCl, pH 2.0. The molecular weights were 328 and 298 × 10² for corneal and scleral type I collagen, respectively, while the values of T_M were 33.7°C for both preparations. These values were in agreement with those obtained for other type I collagens. The higher level of glycosylation in corneal versus scleral type I collagen did not significantly modify the physical properties of type I collagen in acid solution or the charge distribution along the molecule as determined from the positively stained SLS banding patterns. Our morphological studies indicated that the collagen molecule, although relatively flexible based on electron microscopy, behaved as a long thin rod in solution. The mean end-to-end distances measured from electron micrographs were 253 and 256 nm for corneal and cler type I collagen, respectively, while the molecular contour lengths were 298 and 305 nm. The translational diffusion coefficients (0.849 and 0.857 × 10^?7cm²s^?1) were consistent with the contour lengths while the reported values in the literature for the rotational diffusion coefficient of type I collagen were consistent with the end-to-end distances. The intermediate value for molecular length obtained from the particle scattering factor (277 nm) reflects contributions from all possible molecular configurations.     

6-Phosphogluconolactonase from Zymomonas mobilis: An enzyme of high catalytic efficiency

The enzyme 6-phosphogluconolactonase (EC 3.1.1.31) is present at high levels in Zymomonas mobilis cells. A simple procedure for its isolation involving dye-ligand chromatography and gel filtration has resulted in a 500-fold purification with high recovery. The purified enzyme is a monomer of 26 kDa, and has a high catalytic efficiency with $\text{k}{}_{\mathrm{cat}}\text{K}{}_{\mathrm{m}}$ of 9 × 10⁷ M⁻¹ s⁻¹ at 25° C. Two assay procedures for the enzyme are compared, and a simple method of obtaining a solution of 6-phosphoglucono-δ-lactone relatively free of other metabolites is presented.     

Nuclear magnetic resonance and light scattering studies of the aggregation of dipalmitoyl-phosphatidylcholine-Benzene systems

Magnetic resonance, light scattering measurements and visual observations have been performed on lecithin-benzene systems as a function of temperature from 80 to ?60°C and concentration from $\text{n = n}{}_{\mathrm{<mtext>benzene</mtext>}}\text{/n}{}_{\mathrm{<mtext>DPPC</mtext>}}\text{= 3?200}$.From these measurements the transition curves from micellar solution to the crystalline state were deduced. More than 5 benzene molecules per lecithin molecule are necessary to get a micellar solution.Both the size of crystallites and the distribution of pores in the crystalline state depend on the rate of cooling and history.For the crystal structure a biporous model is suggested.At about 0°C the bulk of the benzene freezes, but a small amount of about 3 benzene molecules per lecithin molecule remains unfrozen to about ?50°C.The systems studied show considerable temperature hysteresis and ageing effects.Small amounts of water of one to two water molecules per lecithin molecule drastically change the properties of the lecithin systems.     

Molecular arrangements in sphingolipids. The crystal structure of cerebroside

The single crystal analysis of a complex, membrane glycolipid is described. Cerebroside (β-D-galactosyl-N-(2-D-hydroxyoctadecanoyl)-D-dihydrosphingosine, $\text{C}{}_{42}\text{H}{}_{32}\text{O}{}_9\text{N}\text{·}\text{1}\text{2}\text{C}{}_2\text{H}{}_5\text{OH}$) — an important constituent of plasma membranes — crystallizes in the monoclinic spacegroup P2, with a = 11.202, b = 9.262, c = 46.46 A and β = 99.00^°. There are two independent molecules in the asymmetric unit partly related by a non-crystallographic symmetry. The structure was determined by direct methods and refined to R = 0.116.The molecules pack in a typical bilayer arrangement with adjacent double layers separated by ethanol molecules of crystallization. The planes of the sugar rings are turned almost parallel to the layer interface which gives the molecules the shape of a shovel. Together with the polar ceramide part, the galactose head groups form an extensive lateral network of hydrogen bonds within the polar region of each layer. The chains tilt by an angle of 49^° towards this polar boundary. A parallel stacking of the chains is achieved by a bend of the sphingosine chain as far up as carbon atom 5 and 6 in the two independent molecules. The lateral hydrocarbon chain packing is of an earlier unknown hybrid type (HS2). Chains with parallel zigzag planes are arranged in pleated shoets. These sheets contain alternatively fatty acid and sphingosine chains which have a mutually perpendicular chain plane orientation.     

Orientation of chromophores in reaction centers of Rhodopseudomonas sphaeroides: A photoselection study

The relative orientation of the pigments of reaction centers from Rhodopseudomonas sphaeroides has been studied by the photoselection technique.A high value (+0.45) of $\text{p =}\text{(ΔA}{}_{\mathrm{<mtext>V</mtext>}}\text{? ΔA}{}_{\mathrm{<mtext>H</mtext>}}\text{)}\text{(ΔA}{}_{\mathrm{<mtext>V</mtext>}}\text{+ ΔA}{}_{\mathrm{<mtext>H</mtext>}}$) is obtained when exciting and observing within the 870 nm band which is contradictory to the results of Mar and Gingras (Mar, T. and Gingras, G. (1976) Biochim. Biophys. Acta 440, 609–621) and Shuvalov et al. (Shuvalov, V.A., Asadov, A.A. and Krakhmaleva, I.N. (1977) FEBS Lett. 76, 240–245). It is shown that the low values of p obtained by both groups were erroneous due to excitation conditions.Analysis of the polarization of light-induced changes when exciting with polarized light in single transitions (spheroiden band and bacteriopheophytin Q_x bands) enable us to propose a possible arrangement of the pigments within the reaction center. It is concluded that the 870 nm band corresponds to a single transition and is one of the two bands of the primary electron donor (P-870). The second band of the bacteriochlorophyll dimer is centred at 805 nm. The Q_y transitions of the molecules constituting the bacteriochlorophyll dimer are nearly parallel (angle less than 25°).The two bacteriopheophytin molecules present slightly different absorption spectra in the near infra-red. Both bacteriopheophytin absorption bands are subject to a small shift under illumination. The angle between the Q_y bacteriopheophytin transitions is 55° or 125°. Both Q_y transitions are nearly perpendicular to the 870 nm absorption band. Finally, the carotenoid molecules makes an angle greater than 70° with the 870 nm band and the other bacteriochlorophyll molecules.     

Lateral and transversal diffusion and phase transitions in erythrocyte membranes. An excimer fluorescence study

The lateral diffusion of the excimer-forming probe pyrene decanoic acid has been determined in erythrocyte membranes and in vesicles of the lipid extracts. The random walk of the probe molecules is characterized by their jump frequency, v_j, within the lipid matrix. At T = 35°C a value of v_j = 1.6 · 10³ s^?1 is found in erythrocyte membranes. A somewhat slower mobility is determined in vesicles prepared from lipid extracts of the erythrocyte membrane. Depending on structure and charge of the lipids we obtain jump frequencies between 0.8 · 10⁸ s^?1 and 1.5 · 10⁸ s^?1 at T = 35°C. The results are compared with jump frequencies yielded in model membranes.The mobility of molecules perpendicular to the membrane surface (transversal diffusion) is investigated. Erythrocyte ghosts doped with pyrene phosphatidylcholine were mixed with undoped ghosts in order to study the exchange kinetics of the probe molecule. A fast transfer between the outer layers of the ghost cells ($\text{τ}{}_{\mathrm{<mtext>1</mtext><mtext>2</mtext>}}\text{= 1.6}\text{min at}\text{T = 37°}\text{C}$) is found. The exchange process between the inner and the outer layer of one erythrocyte ghost (flip-flop process) following this fast transfer occurs with a half-life time value of $\text{t}{}_{\mathrm{<mtext>1</mtext><mtext>2</mtext>}}\text{= 100}\text{min at}\text{T = 37°}\text{C}$.The application of excimer-forming probes presumes a fluid state of the membrane. Therefore we investigated the phase transition behaviour using the excimer technique. Beside a thermotropic phase transition at T = 23°C and T = 33°C we observed an additional fluidity change at T = 38°C in erythrocyte ghosts. This transition is attached to a separation of the boundary lipid layer from the intrinsic proteins. No lipid phase transition is observed in liposomes from isolated extracts of the erythrocyte membrane with our methods.     

Molar extinction coefficients and other properties of an improved reaction center preparation from Rhodopseudomonas viridis

Reaction centers have been purified from chromatophores of Rhodopseudomonas viridis by treatment with lauryl dimethyl amine oxide followed by hydroxyapatite chromatography and precipitation with ammonium sulfate. The absorption spectrum at low temperature shows bands at 531 and 543 nm, assigned to two molecules of bacteriopheophytin b. The 600 nm band of bacteriochlorophyll b is resolved at low temperature into components at 601 and 606.5 nm. At room temperature the light-induced difference spectrum shows a negative band centered at 615 nm, where the absorption spectrum shows only a weak shoulder adjacent to the 600 nm band. The fluorescence spectrum shows a band at 1000 nm and no fluorescence corresponding to the 830 nm absorption band. Two molecules of cytochrome 558 and three of cytochrome 552 accompany each reaction center. The differential extinction coefficient (reduced minus oxidized) of cytochrome 558 at 558 nm was estimated as 20 ± 2 mM^?1 · cm^?1 through a coupled reaction with equine cytochrome c. The extinction coefficient of reaction centers at 960 nm was determined to be 123 ± 25 mM^?1 · cm^?1 by measuring the light-induced bleaching of P-960 and the coupled oxidation of cytochrome 558. The corresponding extinction coefficient at 830 nm is 300 ± 65 mM^?1 · cm^?1. The absorbance ratio $\text{a}{}_{\mathrm{<mtext>280</mtext><mtext>nm</mtext>}}\text{a}{}_{\mathrm{<mtext>830</mtext><mtext>nm</mtext>}}$ in our preparations was 2.1, and there was 190 kg protein per mol of reaction centers. Sodium dodecyl sulfate-polyacrylamide gel electrophoresis showed three major components of apparent molecular weights 31 000, 37 000 and 41 000.     

Comparison of the structures of the native form of rat liver 5S rRNA and yeast tRNAphe: small-angle and wide-angle X-ray scattering study

The small-angle and wide-angle X-ray scattering of tRNA^phe (yeast) and ribosomal 5S RNA (rat liver) in solution have been analysed and compared. tRNA^phe in solution is folded into a compact L-shaped structure similar to its structure in crystals. The geometry of the secondary structure of the double helical regions is also equivalent to the A-form in the crystalline state. Despite differences between the molar mosses of 5S rRNA (40 000 g mol^?1) and tRNA^phe (25 000 g mol^?1), and the fact that the 5S rRNA molecule is more anisometric than the tRNA^phe molecule, there are many structural similarities. The geometrical parameters of the secondary structure of double helical regions in both RNA molecules are almost identical; the mean rise per base pair is about 0.253–0.28 nm and the mean turn angle is about 32.5–33.5. Identical cross-sectional radii of gyration, R_sq,1 ≈ 1.16 nm and R_sq,2 = 0.92 nm, identical molar mass per unit length, , and a mean thickness of the molecules D ≈ 1.65 nm suggest a similar, nearly coplanar organization of isolated, double helical arms. Furthermore, there are compact regions in the central parts of both molecules, which are the sites of tertiary interactions in the tRNA^phe molecule and are a potential site of tertiary interactions in the SS rRNA molecule for stabilization of the complicated L-shape of the two molecules. Both molecules have a pseudo-twofold axis,w hich may play a role in recognition for binding of specific proteins.     

Biochemical aspects of the visual process. XXXVI. Calcium accumulation in cattle rod outer segments: Evidence for a calcium-sodium exchange carrier in the rod sac membrane

Accumulation of calcium has been studied in bovine rod outer segments (rods), isolated by sucrose density gradient centrifugation. Calcium-depleted rods are obtained by having ethyleneglycol-bis-(β-aminoethylether)-N,N′-tetraacetic acid (EGTA) present during isolation.Rods thus isolated have a leaky plasma membrane, as shown by the effects of ionophore A23187 and by their light-induced phosphorylation behaviour. The accumulation of ⁴⁵Ca, determined by incubation followed by a single fast washing-filtration procedure, thus represents translocation across the rod sac membrane.Accumulation in non-depleted rods is independent of the external calcium level and of ATP, suggesting exchange of ⁴⁰Ca by ⁴⁵Ca. In depleted rods in the presence of ATP there is net uptake, sigmoidally increasing with the external calcium concentration to the level attained in non-depleted rods. This net uptake is abolished by omission of ATP, its replacement by β,γ-methylene ATP and lowering the temperature to 0° C, suggesting involvement of enzymatic hydrolysis of ATP.Replacement of KCl by NaCl in the medium causes marked inhibition of ⁴⁵Ca uptake, both net uptake and exchange. Oligomycin, ruthenium red, lanthanum and ouabain do not inhibit accumulation.Efflux of ⁴⁵Ca from pre-loaded rods is slow in a KCl medium ($\text{t}{}_{\mathrm{<mtext>1</mtext><mtext>2</mtext>}}\text{～30}\text{min}$ at 25° C), but is greatly accelerated by addition of NaCl or Ca²⁺ ($\text{t}{}_{\mathrm{<mtext>1</mtext><mtext>2</mtext>}}\text{10}\text{s}$ at 25°C).It is concluded that the rod sac membrane contains a carrier system, which is sensitive towards Ca²⁺ and Na⁺ and which requires ATP for net uptake of Ca²⁺ but not for exchange transport of Ca²⁺ with Ca²⁺ or Na⁺.     

Determination of the elastic constants of collagen by Brillouin light scattering

The high-frequency elastic properties of rat-tail tendon collagen have been investigated by means of Brillouin (inelastic) light scattering. Longitudinally and transversely polarised elastic waves of frequency about 10¹⁰ Hz have been observed propagating at various angles to the fibre axis of stretched, partially dried tendon. Assuming that the elastic properties of tendon are transversely isotropic, these measurements enable the five elastic constants for such a system to be determined. In particular the ratio of the Young's modulus for strain parallel to the axis to that for strain perpendicular to the axis ($\text{E}{}_{\mathrm{\parallel }}\text{E}{}_{\mathrm{\perp }}$) is found to be 1.43 and the ratio of the shear modulus to E_∥ is 0.28. In wet collagen only the longitudinal branch has been observed and in this case the ratio $\text{E}{}_{\mathrm{\parallel }}\text{E}{}_{\mathrm{\perp }}$ increases to 1.82. The absolute value for E_∥ in dry collagen is 11.9 GN m^?2 reducing to 5.1 GN m^?2 in wet collagen. An interpretation of these results in terms of the expected vibrations of the collagen molecular assembly is given. Possible applications to the determination of the mechanical properties of collagen composite materials such as bone are discussed as well as some measurements on silk and α- and β-keratins, which are fibrous proteins of different molecular conformation to collagen.     

Infinite cis influx of cyclic AMP into human erythrocyte ghosts

Infinite cis uptake of cyclic AMP into red blood cell ghosts has been measured. The $\text{K}{}_{\mathrm{<mtext>i</mtext><mtext>c</mtext>}}{}^{\mathrm{<mtext>oi</mtext>}}$ is calculated from two different integrated rate equations that are applicable when the substrate concentration is unsufficient to cause volume changes. Values of 0.69 mM and 0.66 mM are obtained for the infinite cis$\text{K}{}_{\mathrm{<mtext>m</mtext>}}$ at 30°C using these procedures. These values are only slightly higher than that predicted from zero trans net flux experiments.Lowering the temperature reduces $\text{K}{}_{\mathrm{<mtext>i</mtext><mtext>c</mtext>}}{}^{\mathrm{<mtext>oi</mtext>}}$ from 0.69 mM at 30°C to 0.478 mM at 20°C, 0.108 mM at 10°C and 0.072 mM at 4°C ($\text{Q}{}_{10}\text{= 2.4}$). The $\text{Q}{}_{10}$ for activation of influx permeability of 10^?5 M cyclic AMP is 1.55.     

Effect of temperature on the embryonic development of the plaice, Pleuronectes Platessa L. (teleostei)

In normalyears, eggs and prolarvae of the plaice (Pleuronectes platessa L.) in the southern North Sea develop within the temperature range 6.0–8.5 °C, although the water may at times be some degrees colder or warmer than this. The effect of temperature, t °C, on the embryonic development time, D days, has been investigated within the tolerated range 2.8–10.5 °C. Various models to express the observed curvilinear relationship between t and D have been considered, that giving the closest fit to the data being (t−t₀)(D−D₀) = k or $\text{D =}\text{k}\text{(t−t}{}_0\text{)+D}{}_0$. A method is given for the calculation of constants k, D₀, and t₀. The relationship may also be expressed by the equation D = a(t−t₀)^b where a and b are constants, but t₀ must in this case be found by iteration. At investigated temperatures in the range 4.1–10.5 °C the smallest eggs in a batch from a single source hatched first. Within the tolerated range, hatching prolarvae were substantially smaller at 10.5 °C than at the other temperatures. During the period of prolarval yolk utilization, growth is slower at the high temperatures, so that median temperatures of 6.5–8.0 °C are most efficient in terms of the relationship between growth in length and yolk utilization. Toward the end of the yolk-sac phase, the rate of yolk utilization declines unless a suitable external food source (e.g., Artemia nauplii) is provided.     

Characteristics of leucine transport by isolated hepatocytes of antarctic fish at low temperatures

Hepatocytes prepared by collagenase perfusion from Antarctic nototheniid fish of genus Trematomus are active in uptake of [¹⁴C]leucine at 0, 5, and 10°C. The system is saturable with apparent $\text{K}{}_{\mathrm{<mtext>m</mtext>}}$ about 1.0 mM. Isoleucine and phenylalanine were major competitors, valine was about one-half as effective, while alanine, glycine and histidine had no effect. Temperature dependency of rates in the 0–10°C range yielded $\text{E}{}_{\mathrm{<mtext>a</mtext>}}\text{= 65}\text{kJ/mol}$ ($\text{Q}{}_{10}\text{= 2.7}$). The average first-order rate constant at 0°C was 0.1 min^?1, one-third the value of 0.3 min^?1 estimated for clearance of [¹⁴C]leucine by liver of these species in vivo. Affinity and specificity agreed well with in vivo data on liver clearance of leucine, both in Antarctic fish at 0°C and in temperate fish acclimated to 10°C and 20°C. The results indicate similar modifications of leucine transport associated with evolutionary cold adaptation and seasonal acclimation in fish.     

The study of the primary photoprocesses in Photosystem I of chloroplasts Recombination luminescence,chlorophyll triplet state and triplet-triplet annihilation

The dependence of the delayed luminescence of Photosystem I on the state of the reaction centers has been studied. Light flash induces a charge separation in the centers: $\text{P-700 · P-430}\textcolor{red}{}\text{P-700}{}^{\mathrm{+}}\text{· P-430}{}^{\mathrm{?}}$. Dark recombination of charges is accompanied by the recombination luminescence with $\text{τ}{}_{\mathrm{<mtext>1</mtext><mtext>2</mtext>}}\text{? 20}\text{ms}$.If the centers are in the P-700 · P-430^? state or if P-430 is inactivated by heat, then flashing of Photosystem I generates the triplet state chlorophyll with $\text{τ}{}_{\mathrm{<mtext>1</mtext><mtext>2</mtext>}}\text{? 0.5}\text{ms}$. The triplet state has been measured by the delayed fluorescence of chlorophyll at 20 °C and 77 °K and by the chlorophyll phosphorescence at 77 °K. The delayed fluorescence at 20 °C arises from the thermal activation of the triplet state up to the excited singlet level of chlorophyll and at 77 °K it is due to triplet-triplet annihilation. The quantum yield of the triplet formation, estimated by a comparison of the light saturation curves of delayed fluorescence at 20 °C and of P-700 photooxidation under the same experimental (optical) conditions, is ≈ 0.9 of the P-700⁺ yield. Only one triplet of chlorophyll can be generated per P-700. Under heat inactivation of P-430 the triplet formation is not observed when P-700 is oxidized.It is assumed that the triplet-triplet annihilation at 77 °K is related with the strong interaction between the chlorophyll molecules in the pigment complex of Photosystem I. The possibility of a triplet participation in the primary processes of photosynthesis is discussed.