Chondrocranium and skeletal development of Phrynops hilarii (Pleurodira: Chelidae)

The present study represents the first comprehensive contribution to the knowledge of the skeletal development of a pleurodiran turtle, Phrynops hilarii (Pleurodira, Chelidae). The most remarkable features found are: (1) absence of ascending process on pterygoquadrate cartilage; (2) presence of ossification centres for the epiotics; (3) as in other pleurodirans, dorsal ribs IX and X are ‘sacralized’; (4) contact between ilium and carapace occurs later in ontogenetic development; (5) suture between ischia, pubes and plastron occurs in posthatching specimens; (6) contrary to previous interpretations, the phalangeal formula of the pes of P. hilarii is 2 : 3 : 3 : 3 : 5; (7) the hooked bone represents the fifth metatarsal.     

Atolchelys lepida,a new side-necked turtle from the Early Cretaceous of Brazil and the age of crown Pleurodira

We report a new pleurodiran turtle from the Barremian Morro do Chaves Formation, Sergipe-Alagoas Basin, Brazil. We tested the phylogenetic position of Atolchelys lepida gen. et sp. nov. by including it in a comprehensive cladistic analysis of pleurodires. The new species is a basal member of Bothremydidae and simultaneously the oldest unambiguous crown Pleurodira. The biogeographic and chronostratigraphic significance of the finding has implications for the calibration of molecular clocks studies by pushing back the minimum age of crown Pleurodira by more than 12 Ma (ca 125 Ma). The reanalysis of Pelomedusoides relationships provides evidence that the early evolution and relationships among the main lineages of side-necked turtles can be explained, at least partially, by a sequence of vicariance events.     

Proopiomelanocortin (POMC) and testing the phylogenetic position of turtles (Testudines)

Morphological and molecular studies have inferred multiple hypotheses for the phylogenetic relationships of Testudines. The hypothesis that Testudines are the only extant anapsid amniotes and the sister taxon of diapsid amniotes is corroborated by morphological studies, while the hypothesis that Testudines are diapsid amniotes is corroborated by more recent molecular and morphological studies. In this study, the placement of Testudines is tested using the full length cDNA sequence of the polypeptide hormone precursor proopiomelanocortin (POMC). Because only extant taxa have been used, the hypotheses being tested are limited to the following (1) Testudines as the sister taxon of Archosauria, (2) Testudines included in Archosauria and the sister taxon of Crocodilia, (3) Testudines as the sister taxon of Lepidosauria, (4) Testudines as the sister taxon of Sauria, and (5) Testudines as the sister taxon of a monophyletic Mammalia–Sauria clade. Neither Maximum likelihood, Bayesian, or maximum parsimony analyses are able to falsify the hypothesis of (Archosauria (Lepidosauria, Testudines)) and as such is the preferred inference from the POMC data.     

Two new species of the side necked turtle genus,Bairdemys (Pleurodira, Podocnemididae), from the Miocene of Venezuela

The side-necked turtle genusBairdemys (Podocnemididae,Shweboemys Group) from the Miocene of Venezuela and Puerto Rico is revised, and four species are diagnosed on the basis of skull characters; two are de-scribed as new.B. hartsteini Gaffney &; Wood, 2002, from the Cibao Formation of Puerto Rico, is characterized by a higher skull, with a straight labial ridge and a premaxillary notch;B. venezuelensis (Wood &; Díaz de Gamero 1971), from the Urumaco Formation of Venezuela, is characterized by the absence of a premaxillary notch, a high anterior triturating surface convexity, a deep posterior triturating surface concavity, and a short pterygoid mid-line contact;B. sanchezi, new species, from the Urumaco Formation of Venezuela, is characterized by a very low anterior triturating surface convexity and shallow posterior triturating surface concavity, a premaxillary notch, small size, and extensive temporal and cheek emargination;B. winklerae, new species, from the Urumaco Formation of Venezuela, is characterized by an elongate, narrow snout, with a concave labial ridge, and no premaxillary notch. Based on osteological and bone histological results, an additional strongly crushed skull and associated cara-pace fragment of a previously undetermined podocnemidid from the Urumaco Formation of Venezuela can be further referred toPodocnemis or a closely related taxon — again underscoring the importance of this formation as one of the major fossil lagerstätten of turtles in South America.     

Lindholmemydid turtles (Cryptodira: Testudinoidea) from the Late Cretaceous of Shandong Province,China

A new genus and new species of lindholmemydid turtle (Cryptodira: Testudinoidea), Shandongemys dongwuica n. g. and n. sp. are described on the basis of a partial skeleton with incomplete shell and skull, complete lower jaws and disarticulated limb bones from the Upper Cretaceous Wangshi Group of Zhucheng, Shandong Province, China. Among Lindholmemydidae, the new species is closely related to Mongolemys elegans from the Late Cretaceous of Mongolia. An incomplete shell from the same locality is referred as Lindholmemydidae indet. Glyptops sp. from the Upper Cretaceous Wang Group of Jingangkou, Laiyang, Shandong is revised and assigned to Lindholmemydidae.     

基于ITS序列对中国簇毛黄耆亚属(黄耆属)系统学问题的初步研究

测定了簇毛黄耆亚属(Pogonophace)4组8种和外类群Caragana roborovskyi的ITS序列,从GenBank中调出相关12属47种的ITS序列,组成数据距阵,应用PAUP程序中的最大简约法构建了系统发育树状图.扁荚组(Sect. Sesbanella)与亚属其余类群在系统树上处于不同的分支,亲缘关系较远,这个亚属不是一个单系类群;膨果组(Sect. Bibracteola),背扁组(Sect. Phyllolobium)和袋果组(Sect. Trichostylus)作为一个单系类群能得到ITS序列的支持,但与鱼鳔槐亚族比与黄耆属其他类群的关系更近; Astragatus complanatus和A. tribulifolius可能为一对替代种;亚属下的分组以及膨果组下系的划分都得不到ITS序列分析的支持.     

Chromosome studies of the cultured cells of two species of side-necked turtles (Podocnemis unifilis and P. expansa)

The diploid chromosome number of two species of sidenecked turtles (Podocnemis unifilis and P. expansa) was found to be 28. Under normal culture conditions, half of the chromosomes of P. unifilis consistently show one or two clear secondary constrictions. In P. expansa, the incidence of cells with chromosomes bearing secondary constrictions and the number of such chromosomes per cell are less. Cells of two P. unifilis cell lines maintained a normal diploid karyotype for two years following their initiation. Then one cell line shifted to a hypodiploid mode of 27 and half of the population of the second line became pseudodiploid, the other half remaining diploid. A single six-month-old cell line from P. expansa has maintained a normal diploid mode through 10 passages.Supported in part by grant-CA 08737 from the National Cancer Institute.     

基于线粒体Cyt b基因的全长序列探讨闭壳龟类的系统进化

采用PCR技术对淡水龟科具闭壳结构的黄缘盒龟、黄额盒龟、金头闭壳龟、潘氏闭壳龟、锯缘龟和白腹摄龟的线粒体Cytb基因的全长序列进行了PCR扩增和序列测定,并结合GenBank中16种淡水龟科物种的同源序列,进行了序列变异和系统发生分析。经C lustalX1.8软件对位排列后共有1154个位点,其中可变位点413个,简约信息位点301个;A＋T的平均含量（56.5%）高于G＋C（43.5%）。在氨基酸密码子中,第一位富含A,第二位富含T,第三位富含C;碱基转换/颠换率为5.97,碱基替换多发生在密码子第三位。以中华鳖和马来鳖为外群,通过最大简约法,最大似然法和贝叶斯法重建了分子系统树,均具有一致的拓扑结构,结果表明：金头闭壳龟和潘氏闭壳龟最先聚成一支,再和三线闭壳龟聚成一组,说明形态上相似的三种闭壳龟亲缘关系最近;闭壳龟属、盒龟属和单种锯缘龟属聚成一个单系的闭壳龟群,建议合并为闭壳龟属;齿缘龟属和果龟属聚为一支,它们与新的闭壳龟属关系较远,揭示闭壳结构的形成不是由一个共同祖先分化而来;乌龟属、花龟属和拟水龟属三属为并系起源,建议三属可以合并为一属。     

A new Xinjiangchelyid turtle (Testudines, Eucryptodira) from the Jurassic Qigu Formation of the southern Junggar Basin, Xinjiang, north-west China

A new eucryptodiran turtle, Xinjiangchelys qiguensis sp. nov. from the Upper Jurassic (Oxfordian — ?Kimmeridgian) Qigu Formation of the southern Junggar Basin (north‐west China) is described. The type material consists of a partial skeleton, including the complete carapace, plastron, nearly all cervical vertebrae, both scapulae, the pelvis and one ulna. It is clearly identifiable as a basal eucryptodire since it lacks the mesoplastron. It is distinguished from other species of Xinjiangchelys by several autapomorphies of the carapace and plastron, such as the first and fifth vertebrals extending on the peripherals, the plastron with three pairs of gulars, and an intergular which does not contact the hyoplastron. In the postcranium, the scapula with a long acromial and a small scapular process, the pelvis with a short ilial shaft and the elongated cervical vertebrae are characteristic. A new phylogenetic analysis of the in‐group phylogeny of the Xinjiangchelyidae is proposed and discussed, resulting in a new classification of the family. Xinjiangchelys (Toxocheloides) narynensis is regarded as a nomen dubium. Shartegemys is referred to Xinjiangchelys, whereas the holotypes of ‘Plesiochelys’chungkingensis and ‘P’. latimarginalis are excluded from the genus Xinjiangchelys but included in the Xinjiangchelyidae.     

基于ITS序列对中国簇毛黄耆亚属（黄耆属）系统学问题的初步研究

测定了簇毛黄耆亚属（Pogonophace)4组8种和外类群Caragana roborovskyi的ITS序列,从GenBank中调出相关12属47种的ITS序列,组成数据距阵,应用PAUP程序中的最大简约法构建了系统发育树状图。扁荚组（Sect.Sesbanella)与亚属其余类群在系统树上处于不同的分支,亲缘关系较远这个亚属不是一个单系类群;膨果组（Sect.Bibracteola)。背扁组（Sect.Phyllolobium)和袋果组（Sect.Trichostylus)作为一个单系类群能得到ITS序列的支持,但与分组以及膨果组下系的划分都得不到ITS序列分析的支持。     

A new species of Neochelys (Chelonii,Podocnemididae) from the Ypresian (Early Eocene) of the South of France

The known European record of the Gondwanan group Podocnemididae begins in the Early Eocene. Neochelys underwent a rapid diversification and was an abundant and diverse representative of this group during the Eocene of Europe from the Early Ypresian to at least the Bartonian. However, several of its species are poorly known, and the phylogenetic relationships among them are poorly understood. A complete shell from the Ypresian of Hérault (southern France) is described here. It is assigned to a new species, Neochelys liriae. The availability of characters of N. liriae is tested by comparison with the other European species, which appear to be well differentiated, and particularly with the neighbouring French taxa N. eocaenica and N. laurenti, of which the latter has been little known to this point.     

Molecular phylogeny and plumage evolution in gulls (Larini)

We used DNA sequence data of the mitochondrial control region and cytochrome b gene to assess phylogenetic relationships among 32 gull species and two outgroup representatives. We tentatively estimated divergence times from transversional substitutions calibrated against DNA–DNA hybridization data. Several strongly supported species groups are identified, but the relationships between these species groups and the rooting of the gull tree remain unresolved. Geographical range extension appears as a factor of speciation, but several related, well‐differentiated species seem to have evolved within comparatively restricted areas. Some plumage characters used in the past for delimiting species groups appear inappropriate. The dark hooded species, for instance, do not constitute a natural assemblage. Molecular data also allowed the identification of several striking plumage convergences that had obscured the true relationships between gull species until now. For example, the dark tropical gulls analysed here each belong to totally different clades and are independent examples of convergent plumage evolution under common environmental constraints. The reverse situation also happened, with two arctic‐distributed species, the ivory gull (Pagophila eburnea) and the Sabine’s gull (Xema sabini), appearing as sister taxa despite completely different plumage features. Molecular data have thus significantly improved our understanding of gull evolution.     

Oviducal development in a Krefft's river turtle,Emydura krefftii gray (Chelonia: Chelidae)

A clutch of Emydura krefftii eggs hatched 20 days after oviposition, in contrast to the normal incubation period of 45–50 days for this species. This shortened incubation and the presence of stage 20–21 embryos at oviposition indicates facultative oviducal development in E krefftii.     

The evolution of Strepsiptera (Hexapoda)

An evolutionary scenario for the enigmatic group Strepsiptera is provided, based on the results of a comprehensive cladistic analysis of characters of all life stages. A recently described fossil--+Protoxenos janzeni--the most archaic strepsipteran, sheds new light on the early evolution of the group and reduces the "morphological gap" between Strepsiptera and other insects. It weakens both current hypotheses--Coleoptera+Strepsiptera and Diptera+Strepsiptera (="Halteria"). The splitting into +Protoxenos (Protoxenidae) and the remaining Strepsiptera was linked with a distinct size reduction and many morphological changes. Unlike males of extant strepsipteran species, +Protoxenos was still able to process food. Mengeidae (+Mengea), with two small species, is the sister group of extant Strepsiptera. A unique characteristic of extant males (Strepsiptera s. str.) is the mouthfield sclerite. It is part of an air uptake apparatus which belongs to an extremely modified air-filled "balloon gut". Besides this, male strepsipterans possess specialised antennae and compound eyes, a strongly developed flight apparatus, large testes, and a sperm pump, whereas other organ systems are strongly reduced (e.g., fat body, malpighian tubules). Males are designed to find females within a few hours and to copulate. A dramatic change is linked with the split into Mengenillidae and Stylopidia. The change to pterygote hosts and the permanent endoparasitism of the females are evolutionary novelties acquired by the latter clade, and linked with far-reaching morphological transformations, e.g. the presence of unique brood organs. Hairy tarsal adhesive devices are present in males and guarantee efficient attachment to the host during copulation. A well-founded clade within Stylopidia is Stylopiformia, which are characterised by a unique fissure-shaped birth opening. The evolutionary development towards the most specialised and successful forms (parasites of aculeate Hymenoptera [e.g., Xenidae+Stylopidae], ca. 46% of the species) is a stepwise process. The presented evolutionary scenario comprises a complex network of functionally correlated morphological changes in primary larvae, secondary larvae, females and males.     

The mole's thumb -- evolution of the hand skeleton in talpids (Mammalia)

Osteological specimens representing 15 out of the 16 currently recognized talpid genera were examined and scored for seven discrete morphological characters of the hand. The phylogenetic distribution of these characters was studied in the context of alternative hypotheses of talpid relationships, using three species of shrews and a hedgehog as outgroups. All talpids show a similar number and arrangement of carpal bones. The most obvious differences concern the presence of additional sesamoid bones, the relative size of the os falciforme when present, and the degree of fusion of the scaphoid and lunate in the proximal carpal row. Marked differences in the relative length and proportions of the metacarpals also exist. The development of the carpals in Talpa europaea was studied through examination of histological sections of the hand of an embryo and a neonate. Whereas carpal anatomy in the neonate mirrors the arrangement and proportions of the adult, in the embryo the scaphoid and lunate are still separate, there are no signs of the os falciforme, and the size proportions of metacarpals to carpals are obviously different to those of the adult. A prehallux or tibial sesamoid, serial homologue to the os falciforme or prepollex (a radial sesamoid), does not have an obvious functional role, and its presence might be the result of a common epigenetic control in the hand and the foot resulting in a non-adaptive structure in the latter.     

菝葜属和肖菝葜属的核型变异和系统演化研究

基于体细胞染色体核型及花序特征对菝葜科Smilacaceae菝葜属Smilax和肖菝葜属Heterosmilax进行了系统演化研究,报道了国产菝葜科17个分类群的核型。根据已研究的部分形态学特征和已有的核型和分子序列资料,对它们的系统进化进行了分析。结果显示：（1）整个类群的核型变异表现在二型化、多倍化、染色体的微变异以及染色体基数递减（从16-15-13）,16为菝葜类群的基本染色体基数。（2）草本菝葜的核型对称性在东亚到北美种类中,表现出从对称到不对称的变化,而木本菝葜的各组间并未表现出这种趋势。（3）先出叶（prophy11）是宿存的芽鳞,因此在菝葜组sect．China和土茯苓组sect．Coilanthus中具花序的分枝（该分枝基部具先出叶）与圆锥菝葜组sect．Macranthae和穗菝葜组sect．Smilax中着生叶腋的花序分枝或者具关节的单伞形花序是同源的;结合ITS资料,推测花序原始类型是具伞形花序无总花梗呈穗状排列的种类。从祖先类型,花序的分化朝两个方向：一为菝葜属的菝葜组和土茯苓组以及肖菝葜属的全部种类为代表的生于叶腋的单伞形花序,另一为菝葜属的圆锥菝葜组sect．Macranthae的全部种类构成的圆锥．伞形花序。（4）肖菝葜属的核型和ITS数据都表明其为非单系类群,与草本菝葜和土茯苓组成员为姐妹群,首次发现花被2／3联合的过渡类型——筐条菝葜S.corbularia,建议将肖菝葜属降为亚属,置于菝葜属。（5）核型特点支持草本菝葜是东亚起源,扩展到北美,与土茯苓组种类有共同祖先．来自于x=16的木本菝葜,赞同恢复草本组sect．Nemexia。（6）在广布种菝葜S.china中首次发现二倍体居群,已知其存在3种倍性（2x、4x和6x）,发现不同倍性居群的分布规律,推测在第三纪至更新世中期日本、台湾岛与大陆分离之前,菝葜的叙居群已广泛分布,而目前广泛分布的缸居群是岛屿与大陆分离后形靠的。（7）我国西南是菝葜科现代分布和分化中心。     

Systematics and evolution of the Disa draconis complex (Orchidaceae)

The systematic status of Disa draconis (L.f.) Sw. is revised following extensive field studies of population variation in the Western Cape, South Africa. Principal component and cluster analyses revealed clear distinctions between populations from sandplain, semi-arid and montane environments. Diagnostic characters were found in each of the population clusters indicating the existence of a species complex, rather than a single taxon as in the current taxonomy. We propose, therefore, that the name D. draconis (L.f.) Sw. be restricted to the individuals of the sandplain populations from which the type was collected. We reinstate an earlier name, Disa harveiana Lindl., to describe the montane populations which possess several autapomorphic characters. We also show that the geographical variation in spur length and flowering time within this species can be partitioned into two geographically distinct subspecies: D. harveiana subsp. harveiana and D. harveiana subsp. longicalcarata Johnson & Linder. The populations from the semi-arid Karoo region were recognized as a distinct new species, Disa karooica Johnson & Linder, on the basis of their peculiar petal structure. A cladistic analysis indicated that the three species forming the D. draconis complex form a monophyletic and relatively specialized lineage within Disa sect. Coryphaea. The revised classification also has important conservation implications as D. draconis , previously considered a common species, is now restricted to a few highly threatened populations on the west coast near Cape Town.     

A new turtle from the La Colonia Formation (Campanian–Maastrichtian), Patagonia,Argentina, with remarks on the evolution of the vertebral column in turtles

Abstract: Patagoniaemys gasparinae gen. et sp. nov. is a new stem turtle found in central Patagonia, Chubut Province, Argentina, in outcrops of the La Colonia Formation (Campanian–Maastrichtian). This is a turtle of relatively large size (carapace length c. 70 cm), and the preserved remains of the holotype consist of skull fragments and several postcranial elements including a nearly complete vertebral column. A phylogenetic analysis shows Patagoniaemys gasparinae gen. et sp. nov. forming a monophyletic group with Otwayemys cunicularius and Mongolochelys efremovi, as a sister group to Meiolaniidae. A comprehensive review confirms that formed cervical vertebrae appeared independently several times during turtle evolution: in the clade that includes Patagoniaemys gasparinae gen. et sp. nov. and Meiolaniidae, in some baenids, in the total group Pleurodira and in crown group Cryptodira. Likewise, formed caudal vertebrae appeared several times in turtle evolution.     

Phylogenetics and evolution of phyllotaxy in the Solomon's seal genus Polygonatum (Asparagaceae: Polygonateae)

Polygonatum is the largest and most complex genus in tribe Polygonateae, comprising approximately 57 species widely distributed in the warm temperate, subtropical and boreal zones of the Northern Hemisphere. However, phylogenetic relationships in the genus remain poorly understood. The objectives of this study were to reconstruct the phylogenetic relationships of the genus using four plastid markers, and to examine the evolution of leaf arrangement in Polygonatum in the phylogenetic context of its closely related taxa. Thirty Polygonatum species were sampled to infer phylogenetic relationships using maximum‐likelihood and Bayesian analyses. The evolution of leaf arrangements was reconstructed using Bayesian, parsimony and likelihood methods. The phylogenetic analyses supported the current generic delimitation of Polygonatum, with Heteropolygonatum recognized as a distinct genus. Three major lineages in Polygonatum were well supported, largely correlated with geographical distribution and the most recent classification at the sectional level. However, our results did not support the currently recognized series, especially the two large series Verticillata and Alternifolia. Bayesian analyses support the alternate‐leaf arrangement as the ancestral state for Polygonatum, but parsimony and maximum‐likelihood analyses suggest an equivocal state for crown Polygonatum. Leaf arrangement was found to be evolutionarily labile. A new nomenclatural combination was made: P olygonatum section S ibirica (L.I.Abramova) Y.Meng, comb. nov. © 2014 The Linnean Society of London, Botanical Journal of the Linnean Society, 2014, 176 , 435–451.