Sesquiterpene lactones and other constituents of Disynaphia multicrenulata from Argentina

Flowers and leaves of Disynaphia multicrenulata from Argentina afforded a large number of known germacradienolides and heliangolides, a new germacradienolide, a known melampolide, a new parthenolide derivative, one known and seven new cronquistiolides, a new 4Z-melampolide, three known and five new eudesmanolides, a new elemadienolide, a known grazielolide, an isoguaiagrazielolide, two diepoxygermacran-8,12-olides, three common kauranoic acids, pinoresinol, jaceosidin and the sesquiterpene oplopanone. Structures were elucidated by high-field 1H NMR spectrometry. The relationship to the known chemistry of other members of the Disynaphiinae is discussed.     

Sesquiterpenoids and phenolics from Crepis mollis

From the roots of Crepis mollis, one new and two known guaianolides were isolated together with eight known guaianolide glycosides, one known germacranolide glycoside and two known phenylpropanoids. The structure and relative configuration of the new compound were established as 9alpha-hydroxy-4beta, 15, 11beta, 13-tetrahydro-dehydrozaluzanin C by spectral methods.     

用聚类法分析受抗真菌物质处理后的酵母细胞全基因表达谱

微阵列DNA芯片技术可以并行分析成千上万个基因的表达情况,它为研究药物的作用机制提供了一个新的高效技术平台.用9种已知和未知作用机理的抗真菌化合物处理酵母细胞,并得到酵母细胞的全基因表达谱,然后对其进行聚类分析.结果表明作用机制类似的化合物具有相近的聚类关系.两性霉素B和制霉菌素、酮康唑和克霉唑都是已知的作用机制类似的抗真菌药物.通过对基因表达谱进行聚类分析,发现前一组和后一组分别被聚类在一起.另外已知澳洲茄胺抑制的是细胞膜上麦角固醇的合成,聚类分析表明它与酮康唑,克霉唑的聚类很靠近.对微阵列DNA芯片产生的基因表达谱进行聚类分析,由于作用机制相似的药物会被聚类在一起,因此根据未知药物和已知药物的聚类关系,可以了解未知药物的作用机制,这对于加速新药开发的步伐具有十分重要的意义.     

Sesquiterpene lactones from Liatris acidota, L. Aspera and L. Mucronata

Examination of Liatris mucronata gave the known 15-hydroxylated heliangolides liscundin, liscunditrin, punctaliatrin and two new closely related heliangolides. Liatris acidota furnished six new similar but 15-deoxygenated heliangolides as well as euparin and 3β-acetoxytaraxaster-20-en-30-aldehyde. Liatris aspera gave a known glycosidic germacradienolide and a new germacradienolide as well as several known flavones and a known benzofuran. Structures were established by spectroscopic methods and chemical transformations.     

Specific DNA amplification utilizing the polymerase chain reaction and random oligonucleotide primers: application to the analysis of antigen receptor variable regions.

The polymerase chain reaction (PCR) allows rapid amplification of DNA of known sequence. In many situations, part of a genetic sequence is known, but adjacent sequences of interest are unknown. This is common in investigations of antigen receptor genes from B and T lymphocytes, which are composed of a constant region of known sequence and a variable region, for which the sequence may not be known. Herein is described a method to amplify DNA when sequence information is available for only one primer. This procedure utilizes a primer of known sequence in conjunction with a mixture of short random primers. Application of this method to the amplification of T-cell antigen receptor cDNA is described.     

Small RNA profiling from meiotic and post-meiotic anthers reveals prospective miRNA-target modules for engineering male fertility in sorghum

Understanding male gametophyte development is essential to augment hybrid production in sorghum. Although small RNAs are known to critically influence anther/pollen development, their roles in sorghum reproduction have not been deciphered yet. Here, we report small RNA profiling and high-confidence annotation of microRNAs (miRNAs) from meiotic and post-meiotic anthers in sorghum. We identified 262 miRNAs (82 known and 180 novel), out of which 58 (35 known and 23 novel) exhibited differential expression between two stages. Out of 35 differentially expressed known miRNAs, 13 are known to regulate anther/pollen development in other plant species. We also demonstrated conserved spatiotemporal patterns of 21- and 24-nt phasiRNAs and their respective triggers, miR2118 and miR2275, in sorghum anthers as evidenced in other monocots. miRNA target identification yielded 5622 modules, of which 46 modules comprising 16 known and 8 novel miRNA families with 38 target genes are prospective candidates for engineering male fertility in grasses.     

First record of the genus aprivesa melichar (hemiptera: fulgoromorpha) from South India, with description of one new species

Aprivesa unimaculatasp. n. (Hemiptera: Fulgoromorpha: Ricaniidae) is described and illustrated from Coorg, south India. This represents the first record of the genus Aprivesa Melichar from India and the fourth known species of Aprivesa. The new taxon greatly extends the range of the genus Aprivesa, which was previously known as an endemic Australian genus. A checklist of all known species of the Ricaniidae from India and keys to all the known genera of the Ricaniidae from India and all species in the genus are provided.     

Identifying polymer-forming SAM domains

Sterile alpha motif (SAM) domains are common protein modules in eukaryotic cells. It has not been possible to assign functions to uncharacterized SAM domains because they have been found to participate in diverse functions ranging from protein-protein interactions to RNA binding. Here we computationally identify likely members of the subclass of SAM domains that form polymers. Sequences were virtually threaded onto known polymer structures and then evaluated for compatibility with the polymer. We find that known SAM polymers score better than the vast majority of known nonpolymers: 100% (7 of 7) of known polymers and only 8% of known nonpolymers (1 of 12) score above a defined threshold value. Of 2901 SAM family members, we find 694 that score above the threshold and are likely polymers, including SAM domains from the proteins Lethal Malignant Brain Tumor, Bicaudal-C, Liprin-beta, Adenylate Cyclase, and Atherin.     

Terpenoids from Guarea guidonia

The volatile oil and the methanol extract from the leaves of Guarea guidonia, Meliaceae, were individually submitted to chromatographic separation. A sesquiterpene (2S*)-eudesma-5,7-dien-2-ol, together with six known ones, were isolated from the volatile oil. The methanolic extract afforded two known and two new triterpenes (23S*)-cycloart-24-ene-3 beta,23-diol and (23R*)-cycloart-24-ene-3 beta,23-diol, besides three known sesquiterpenes, one known diterpene and two steroids. Their structures were established on the basis of spectrocopic data, mainly by 1H and 13C NMR spectroscopic analyses.     

Iridoid and megastigmane glycosides from Phlomis aurea

From the leaves of Phlomis aurea, two new iridoids of unique structures named 3-epiphlomurin (1) and phlomurin (2), a new megastigmane glucoside phlomuroside (3) and a new benzyl alcohol glycoside having the structure benzyl alcohol-O-beta-xylopyranosyl-(1-->2)-beta-glucopyranoside (4) have been isolated together with four known iridoids auroside, lamiide, 8-epiloganin and ipolamiide, two known phenolic glycosides acteoside (verbascoside) and syringin, one known phenylethanoid glycoside 2-phenylethyl-O-beta-xylopyranosyl-(1-->2)-beta-glucopyranoside, one known lignan liriodendrin and three known flavonoids chrysoeriol-7-O-beta-glucopyranoside, acacetin-7-O-beta-glucopyranoside and luteolin-7-O-beta-glucopyranoside. The structures of the isolated compounds were verified by means of mass spectrometry (MS) and nuclear magnetic resonance (NMR) spectral analyses.     

Some Crustacea Copepoda from Venezuela

The study of 38 samples of aquatic fauna from Venezuela increased the number of known species here from 28 to 66. Fifteen new species for science are described. A list of Copepoda known from the other regions of South America is presented. From this list, it can be said that only 50% of the inland water Copepoda living actually in Venezuela are known.     

An empirical approach for structure-based prediction of carbohydrate-binding sites on proteins

A computer program system was developed to predict carbohydrate-binding sites on three-dimensional (3D) protein structures. The programs search for binding sites by referring to the empirical rules derived from the known 3D structures of carbohydrate-protein complexes. A total of 80 non-redundant carbohydrate-protein complex structures were selected from the Protein Data Bank for the empirical rule construction. The performance of the prediction system was tested on 50 known complex structures to determine whether the system could detect the known binding sites. The known monosaccharide-binding sites were detected among the best three predictions in 59% of the cases, which covered 69% of the polysaccharide-binding sites in the target proteins, when the performance was evaluated by the overlap between residue patches of predicted and known binding sites.     

基因型错误对数量性状精细定位的哈迪-温伯格不平衡指数的效应

使用紧密相邻的标记位点且与标记基因频率无关的哈迪-温伯格不平衡(HWD)指数被用来对数量性状位点(QTL)进行精细定位.本文讨论了当存在基因型错误时HWD指数的性质.文章指出,当存在基因型错误时,对于在群体的标记基因频率已知的情形使用的两个HWD指数尽管受基因型错误的影响但仍然有效;而仅仅极端样本的标记基因频率已知的情形下使用的两个HWD指数同时与基因型错误和标记基因频率有关.计算机模拟表明,仅仅极端样本的标记基因频率已知的情形下使用的两个HWD指数在精细定位时会产生偏差,不适宜作精细定位.     

Guaianolides from Cichorium intybus and structure revision of Cichorium sesquiterpene lactones

The isolation and structure elucidation of a new lactucopicrin derivative from Cichorium intybus is described, together with the revised structures of several sesquiterpene lactones previously isolated from Cichorium species. The known eudesmanolide magnolialide and the known guaianolide ixerisoside D, reported for the first time from the plant material, along with the previously known chicory sesquiterpene lactones have been also isolated and identified.     

中国人群中16个已知肺癌基因突变的综合性分析

目的:对过去已知的肺癌基因在中国人群中的突变分布进行综合性的分析,指导肺癌的临床治疗。方法:通过文献查阅,挑选出16个已知的肺癌基因。在112例肺癌样本中,对这16个基因进行大样本的靶基因测序并用Sanger测序来验证。同时,对突变在不同亚组中的分布差异进行分析。结果:16个已知肺癌基因突变可评价60.4%肺癌样本。同时,这些基因的在不同的样本亚组中表现出不同的突变特点;通过功能域的分析及蛋白空间结构的模拟,发现9个可能的突变热点既位于蛋白的功能域内又能导致蛋白空间结构或者表面电荷分布的异常。结论:通过靶基因深度测序,全面分析了16个已知肺癌基因在肺癌不同亚组中的突变分布差异,发现并初步验证了9个可能的肺癌突变热点。     

Bound and determined: a computer program for making buffers of defined ion concentrations.

A computer program that allows the preparation of buffers containing known concentrations of metal-ligand complexes at defined pH values and temperatures is described. Ligands are defined as compounds that bind metals and may include AMP, ADP, ATP, GMP, GDP, GTP, EGTA, EDTA, BAPTA, phosphate, sulfate, chloride, monocarboxylic acids, dicarboxylic acids, organophosphates, and/or citric acid. Metals may include sodium, potassium, magnesium, calcium, and/or manganese. The program uses association constants corrected for temperature and ionic strength so that solutions between 0 and 40 degrees C and between pH values of 4 and 10 can be defined. The program can perform the following: (i) calculate the concentration of all metal-ligand complexes when total metal and total ligand concentrations are known, (ii) calculate the concentration of metal ion required to make a solution of known free metal ion concentration when total ligand concentrations are known, (iii) calculate the concentration of ligand required to make a solution of known free metal ion concentration when total metal concentrations are known, and (iv) calculate the total concentrations of metal and ligand required to make a buffer of known metal-ligand concentration. Options i-iii are useful for making buffers of defined free metal ion concentrations; option iv is useful for making buffers of defined metal-nucleotide concentrations.     

Description of two new species of Clivina Latreille (Coleoptera, Carabidae, Clivinini) from southeastern United States

Two new species of the genus Clivina Latreille are described. One, Clivina choatei Bousquet & Skelley, belongs to the nominotypical subgenus and is known from six specimens collected in northern Florida. The species is structurally similar to Clivina myops Bousquet, known only from the holotype found in North Carolina, but differs among others by its smaller size and wider elytral striae. The second species, Clivina alabama Bousquet, belongs to the subgenus Antroforceps Barr and is known from two specimens collected in north-central Alabama. The species is structurally most similar to Clivina sasajii Ball, known only from Latimer County in Oklahoma, but differs among others in the absence of eyes and in having the pronotum and elytra proportionally wider.     

Three New Species of Thraulodes (Ephemeroptera: Leptophlebiidae: Atalophlebiinae) from Venezuela

Three new species of Thraulodes from Venezuela are described. One species is known from male and female imagines, and the other two only from male imagines. With this, the known Thraulodes species for Venezuela are four. A key for the male imagines of the known species of Thraulodes from Venezuela is provided.