共查询到20条相似文献，搜索用时 15 毫秒
1.
2.
Homma K Fukuchi S Nakamura Y Gojobori T Nishikawa K 《Molecular biology and evolution》2007,24(3):805-813
3.
The C-10 to C-9 methyl group migration in rosane biosynthesis proceeded without loss of mevalonoid hydrogen from C-20 thus excluding a cyclopropane intermediate from the biosynthesis sequence. 10β,19-Dihydroxyrosa-15-ene was comparatively efficiently incorporated into rosenonolactone but it could not be detected in the fermentation. 相似文献
4.
Guo X Geng P Bai F Bai G Sun T Li X Shi L Zhong Q 《Letters in applied microbiology》2012,55(2):162-169
Aims: The aims of this study are to obtain the draft genome sequence of Streptomyces coelicoflavus ZG0656, which produces novel acarviostatin family α‐amylase inhibitors, and then to reveal the putative acarviostatin‐related gene cluster and the biosynthetic pathway. Methods and Results: The draft genome sequence of S. coelicoflavus ZG0656 was generated using a shotgun approach employing a combination of 454 and Solexa sequencing technologies. Genome analysis revealed a putative gene cluster for acarviostatin biosynthesis, termed sct‐cluster. The cluster contains 13 acarviostatin synthetic genes, six transporter genes, four starch degrading or transglycosylation enzyme genes and two regulator genes. On the basis of bioinformatic analysis, we proposed a putative biosynthetic pathway of acarviostatins. The intracellular steps produce a structural core, acarviostatin I00‐7‐P, and the extracellular assemblies lead to diverse acarviostatin end products. Conclusions: The draft genome sequence of S. coelicoflavus ZG0656 revealed the putative biosynthetic gene cluster of acarviostatins and a putative pathway of acarviostatin production. Significance and Impact of the Study: To our knowledge, S. coelicoflavus ZG0656 is the first strain in this species for which a genome sequence has been reported. The analysis of sct‐cluster provided important insights into the biosynthesis of acarviostatins. This work will be a platform for producing novel variants and yield improvement. 相似文献
5.
6.
7.
Kedar Karkare Huei-Yi Lai Ricardo B.R. Azevedo Tim F. Cooper 《Molecular biology and evolution》2021,38(7):2869
Populations of Escherichia coli selected in constant and fluctuating environments containing lactose often adapt by substituting mutations in the lacI repressor that cause constitutive expression of the lac operon. These mutations occur at a high rate and provide a significant benefit. Despite this, eight of 24 populations evolved for 8,000 generations in environments containing lactose contained no detectable repressor mutations. We report here on the basis of this observation. We find that, given relevant mutation rates, repressor mutations are expected to have fixed in all evolved populations if they had maintained the same fitness effect they confer when introduced to the ancestor. In fact, reconstruction experiments demonstrate that repressor mutations have become neutral or deleterious in those populations in which they were not detectable. Populations not fixing repressor mutations nevertheless reached the same fitness as those that did fix them, indicating that they followed an alternative evolutionary path that made redundant the potential benefit of the repressor mutation, but involved unique mutations of equivalent benefit. We identify a mutation occurring in the promoter region of the uspB gene as a candidate for influencing the selective choice between these paths. Our results detail an example of historical contingency leading to divergent evolutionary outcomes. 相似文献
8.
9.
10.
Sophie de Vries Janine M. R. Fürst-Jansen Iker Irisarri Amra Dhabalia Ashok Till Ischebeck Kirstin Feussner Ilka N Abreu Maike Petersen Ivo Feussner Jan de Vries 《The Plant journal : for cell and molecular biology》2021,107(4):975-1002
Land plants constantly respond to fluctuations in their environment. Part of their response is the production of a diverse repertoire of specialized metabolites. One of the foremost sources for metabolites relevant to environmental responses is the phenylpropanoid pathway, which was long thought to be a land-plant-specific adaptation shaped by selective forces in the terrestrial habitat. Recent data have, however, revealed that streptophyte algae, the algal relatives of land plants, have candidates for the genetic toolkit for phenylpropanoid biosynthesis and produce phenylpropanoid-derived metabolites. Using phylogenetic and sequence analyses, we here show that the enzyme families that orchestrate pivotal steps in phenylpropanoid biosynthesis have independently undergone pronounced radiations and divergence in multiple lineages of major groups of land plants; sister to many of these radiated gene families are streptophyte algal candidates for these enzymes. These radiations suggest a high evolutionary versatility in the enzyme families involved in the phenylpropanoid-derived metabolism across embryophytes. We suggest that this versatility likely translates into functional divergence, and may explain the key to one of the defining traits of embryophytes: a rich specialized metabolism. 相似文献
11.
Stevens FJ 《Journal of molecular recognition : JMR》2008,21(1):20-29
The 'immunoglobulin-like' fold is one of most common structural motifs observed in proteins. This topology is found in more than 80 superfamilies of proteins, including Cu,Zn-superoxide dismutase (SOD) and cupredoxin. Evolutionary relationships have not been identified, but may exist. The challenge remains, therefore, of resolving the issue of whether the diverse distribution of the fold is accounted for by divergent evolution of function or convergent evolution of structure following multiple independent origins of function. Since the early studies that revealed conformational similarity of immunoglobulins and other proteins, the number of primary structures available for comparison has dramatically increased and new computational approaches for analysis of sequences have been developed. It now appears that a hypothesis of a common evolutionary origin for cupredoxins, Cu,Zn-SOD, and immunoglobulins may be credible. The distinction between protein homology and protein analogy is fundamental. The immunoglobulin-like fold may represent a robust system within which to examine again the issue of protein homology versus analogy. 相似文献
12.
Keisuke Kariya;Haruka Mori;Makoto Ueno;Takanori Yoshikawa;Masayoshi Teraishi;Yukinori Yabuta;Kotomi Ueno;Atsushi Ishihara; 《The Plant journal : for cell and molecular biology》2024,118(2):358-372
The natural variation of plant-specialized metabolites represents the evolutionary adaptation of plants to their environments. However, the molecular mechanisms that account for the diversification of the metabolic pathways have not been fully clarified. Rice plants resist attacks from pathogens by accumulating diterpenoid phytoalexins. It has been confirmed that the composition of rice phytoalexins exhibits numerous natural variations. Major rice phytoalexins (momilactones and phytocassanes) are accumulated in most cultivars, although oryzalactone is a cultivar-specific compound. Here, we attempted to reveal the evolutionary trajectory of the diversification of phytoalexins by analyzing the oryzalactone biosynthetic gene in Oryza species. The candidate gene, KSLX-OL, which accounts for oryzalactone biosynthesis, was found around the single-nucleotide polymorphisms specific to the oryzalactone-accumulating cultivars in the long arm of chromosome 11. The metabolite analyses in Nicotiana benthamiana and rice plants overexpressing KSLX-OL indicated that KSLX-OL is responsible for the oryzalactone biosynthesis. KSLX-OL is an allele of KSL8 that is involved in the biosynthesis of another diterpenoid phytoalexin, oryzalexin S and is specifically distributed in the AA genome species. KSLX-NOL and KSLX-bar, which encode similar enzymes but are not involved in oryzalactone biosynthesis, were also found in AA genome species. The phylogenetic analyses of KSLXs, KSL8s, and related pseudogenes (KSL9s) indicated that KSLX-OL was generated from a common ancestor with KSL8 and KSL9 via gene duplication, functional differentiation, and gene fusion. The wide distributions of KSLX-OL and KSL8 in AA genome species demonstrate their long-term coexistence beyond species differentiation, suggesting a balancing selection between the genes. 相似文献
13.
Increased metabolite production by deletion of an HDA1‐type histone deacetylase in the phytopathogenic fungi,Magnaporthe oryzae (Pyricularia oryzae) and Fusarium asiaticum 
下载免费PDF全文
下载免费PDF全文 Q. Jin T. Hirose T. Nakamura H. Koshino K. Kanamaru S. Ohsato T. Kamakura T. Kobayashi M. Yoshida M. Kimura 《Letters in applied microbiology》2017,65(5):446-452
14.
15.
16.
白僵菌是重要的昆虫病原真菌,能产生多肽类、聚酮类、生物碱类、苯丙素类、萜类、核苷类等多种结构类型的天然产物,其中很多天然产物显示出优良的抗肿瘤、抗菌、抗病毒和杀虫等活性,具有极大的应用开发潜力。随着白僵菌基因组测序的完成,白僵菌素、白僵菌交酯、球孢交酯、卵孢素及纤细素等活性分子的生物合成基因簇及其生物合成机制已得到阐明,这些研究将大大促进白僵菌来源的新结构活性天然产物的基因组挖掘和发现以及已知重要活性分子的开发应用。本文对已知白僵菌产生的天然产物、药理活性及重要活性分子的生物合成途径进行了概括总结,为系统开发白僵菌天然产物资源提供参考。 相似文献
17.
《Protein science : a publication of the Protein Society》2018,27(8):1450-1463
Viruses are the most abundant life form and infect practically all organisms. Consequently, these obligate parasites are a major cause of human suffering and economic loss. Rossmann‐like fold is the most populated fold among α/β‐folds in the Protein Data Bank and proteins containing Rossmann‐like fold constitute 22% of all known proteins 3D structures. Thus, analysis of viral proteins containing Rossmann‐like domains could provide an understanding of viral biology and evolution as well as could propose possible targets for antiviral therapy. We provide functional and evolutionary analysis of viral proteins containing a Rossmann‐like fold found in the evolutionary classification of protein domains (ECOD) database developed in our lab. We identified 81 protein families of bacterial, archeal, and eukaryotic viruses in light of their evolution‐based ECOD classification and Pfam taxonomy. We defined their functional significance using enzymatic EC number assignments as well as domain‐level family annotations. 相似文献
18.
变构菌素是从Streptomyces griseochromogenes菌株中分离得到的第一个高选择性的蛋白磷酸化酶-1（PP-1）抑制剂。变构菌素及其衍生物在神经系统紊乱、代谢综合症、呼吸系统及相关疾病、免疫抑制、肿瘤治疗等诸多领域都有着广泛的应用前景,因而引起了人们对其生物合成途径的研究兴趣。介绍了近年来变构菌素生物合成途径的研究进展。 相似文献
19.
Rikisaku Suemitsu Jyo Iwai Kyoko Kawaguchi 《Bioscience, biotechnology, and biochemistry》2013,77(11):2249-2250
Leaf aldehyde, (E)-2-hexenal, in diethyl ether, was converted to an ether adduct, 3-(1-ethoxyethyl)-hexanal (diastereomeric mixture) regioselectively, by irradiation with a 100 W high-pressure lamp. 相似文献
20.
Bogun Kim Byoungnam Min Jae-Gu Han Hongjae Park Seungwoo Baek Subin Jeong In-Geol Choi 《Mycobiology》2022,50(4):254
Wolfiporia cocos is a wood-decay brown rot fungus belonging to the family Polyporaceae. While the fungus grows, the sclerotium body of the strain, dubbed Bokryeong in Korean, is formed around the roots of conifer trees. The dried sclerotium has been widely used as a key component of many medicinal recipes in East Asia. Wolfiporia cocos strain KMCC03342 is the reference strain registered and maintained by the Korea Seed and Variety Service for commercial uses. Here, we present the first draft genome sequence of W. cocos KMCC03342 using a hybrid assembly technique combining both short- and long-read sequences. The genome has a total length of 55.5 Mb comprised of 343 contigs with N50 of 332 kb and 95.8% BUSCO completeness. The GC ratio was 52.2%. We predicted 14,296 protein-coding gene models based on ab initio gene prediction and evidence-based annotation procedure using RNAseq data. The annotated genome was predicted to have 19 terpene biosynthesis gene clusters, which was the same number as the previously sequenced W. cocos strain MD-104 genome but higher than Chinese W. cocos strains. The genome sequence and the predicted gene clusters allow us to study biosynthetic pathways for the active ingredients of W. cocos. 相似文献