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1.
【目的】从珠江口沉积物来源的菌株SCSIO40020中分离bafilomycins,并对其生物合成基因簇进行克隆和异源表达研究。【方法】通过分析菌株SCSIO 40020的16S rRNA基因序列并构建系统发育树以鉴定菌种,以柱层析法和制备色谱法对次级代谢产物进行分离纯化,借助波谱学手段完成单体化合物的结构鉴定,采用生物信息学分析定位bafilomycins的生物合成基因簇,通过筛选菌株SCSIO 40020基因组的细菌人工染色体文库和接合转移将bafilomycins生物合成基因簇导入3种链霉菌进行异源表达,利用高效液相色谱检测异源表达菌株的发酵产物。【结果】菌株SCSIO 40020被鉴定为链霉菌属菌株,从其发酵产物中分离鉴定了2个单体化合物bafilomycinsA1和D。克隆了链霉菌SCSIO40020中bafilomycins的生物合成基因簇并推导了其生物合成途径,在3种链霉菌中表达产生了bafilomycins。【结论】从珠江口环境中获得了一株产生bafilomycins的链霉菌SCSIO 40020,成功建立了该菌株次级代谢产物生物合成基因簇的异源表达体系,并首次在链霉菌...  相似文献   

2.
海洋共附生放线菌具有生产结构特殊和活性显著化合物的潜力。【目的】以海洋软体动物石磺Onchidium sp.来源共附生海洋链霉菌Streptomyces ardesiacus SCSIO LO23为研究对象,分离并鉴定其次级代谢产物结构,分析化合物的生物合成基因簇及其生物合成途径。【方法】采用多种培养基对该菌株进行发酵优化并放大发酵,利用多种柱色谱方法分离得到germicidin类化合物,并利用波谱学手段和X-Ray单晶衍射技术完成化合物的结构鉴定;利用Illumina HiSeq对目标菌株进行全基因组测序,结合antiSMASH和BLAST在线分析软件实现菌株中germicidin类化合物生物合成基因功能注释和生物合成途径分析,并通过异源表达进一步确定其生物合成基因。【结果】从AM3培养基发酵产物中分离鉴定了6个吡喃酮类化合物germicidinA(1)、germicidinB(2)、germicidin D (3)、germicidin H (4)、isogermicidin A (5)和isogermicidin B (6),其中化合物2和6对斑马鱼神经行为有显著兴奋作用。通过对...  相似文献   

3.
【目的】以基因组信息为指导,定向激活海洋来源真菌Arthrinium arundinisZSDS1-F3中沉默的聚酮合成酶-非核糖体肽合成酶(PKS-NRPS)类生物合成基因簇,鉴定次级代谢产物结构。【方法】通过启动子工程和异源表达的策略激活实验室培养条件下沉默或低表达的生物合成基因簇,实现目标化合物的分离,通过HR-ESI-MS和NMR数据分析鉴定产物结构,结合基因重组和生物信息学分析结果推导化合物的生物合成途径。【结果】依据基因组生物信息学分析,从海洋来源真菌A. arundinis ZSDS1-F3中选取一个编码PKS-NRPS类次级代谢产物的生物合成基因簇开展研究,在宿主Aspergillus nidulansA1145中实现了基因簇的异源表达,从中分离到2个新化合物,并推导了其生物合成途径。【结论】基因组信息指导下的天然产物挖掘,可以目标明确地分离产物,加快真菌中新颖天然产物的发现步伐。  相似文献   

4.
李华  王利娟  何璟 《微生物学报》2012,52(10):1210-1218
【目的】Streptomyces sahachiroi ATCC 33158全基因组测序后,通过生物信息学分析找到一个II型聚酮合酶(polyketide synthase,PKS)基因簇sah。我们通过基因敲除和异源表达的方法对sah的生物学功能进行了研究。【方法和结果】对sah基因簇ORF(open reading frame)进行分析后发现,除了一个额外的氧甲基转移酶基因sahI以外,该基因簇与天蓝色链霉菌中负责孢子色素合成的基因簇whiE具有很高的相似性。将sah中负责后修饰的3个基因sahG、sahH和sahI分别敲除后,发现孢子色素的颜色随之发生明显的变化。将sah-minimal PKS基因和whiE-minimal PKS基因分别导入变铅青链霉菌ZX1中进行异源表达,高效液相色谱及液质联用分析证实它们产生相同的水溶性红色色素物质。【结论】sah与whiE基因簇具有相似的生物学功能,负责链霉菌孢子色素的合成。这两个基因簇所合成的孢子色素具有相同的母核,差别在于sah基因簇中多了一个编码氧甲基转移酶的后修饰基因,这可能是导致两种链霉菌孢子在颜色上有细微差别的原因。  相似文献   

5.
李金  韩瑞枝  许国超  董晋军  倪晔 《微生物学报》2015,55(11):1427-1436
摘要:【目的】通过克隆来源于糖丁基梭菌(Clostridium saccharobutylicum DSM13864)丁醇合成途径的关键酶基因(thlA,bcs-operon和adhE),构建产丁醇大肠杆菌。【方法】以Clostridium saccharobutylicum DSM13864的基因组为模板,分别扩增丁醇途径关键酶基因thlA,bcs-operon(crt-bcd1-etfB2-fixB2-hbd)和adhE,构建了两个重组质粒pETDuet-bcs和pRSFDuet-thlA-adhE,并成功转入E.coli JM109(DE3)实现异源表达,使大肠杆菌具备产丁醇能力。在半厌氧条件下进行重组菌的发酵,并研究不同培养基对产丁醇的影响。【结果】该重组菌在半厌氧条件下经摇瓶发酵丁醇产量达到25.4 mg/L,通过优化培养基后,在TB发酵培养基中丁醇产量可达到34.1 mg/L。【结论】通过构建重组共表达质粒,将糖丁基梭菌来源的丁醇途径关键酶基因在大肠杆菌中表达,成功构建产丁醇大肠杆菌。该研究提供了一株易于操作的丁醇发酵重组大肠杆菌,避免了传统梭菌发酵丁醇生产中苛刻的厌氧条件、易产孢子等限制问题。  相似文献   

6.
【背景】帕马霉素属于大环内酯类抗生素,具有较好的抗感染活性。该类化合物独特的化学结构和显著的生理活性受到了许多研究者的关注。同时,本实验室在林可链霉菌NRRL2936的全基因组序列中发现了帕马霉素的生物合成基因簇。【目的】尽管其生物合成途径已经得到了解析,但其生物合成基因簇中的2个调控基因功能尚不清楚。本研究从林可链霉菌NRRL2936的基因组文库中克隆了含有帕马霉素生物合成完整基因簇的质粒pJQK450,开展了质粒pJQK450在链霉菌中的异源表达,实现了帕马霉素的异源合成,并初步确定该生物合成基因簇中两个调控基因的功能。【方法】利用聚合酶链式反应递缩基因组文库筛选的方法,从林可链霉菌(Streptomyces lincolnensis)NRRL 2936基因组文库中筛选到了含有帕马霉素生物合成完整基因簇的Fosmid质粒pJQK450。然后,将该质粒转化到E.coli ET12567/pUZ8002中,利用大肠杆菌-链霉菌双亲接合转移的方法将pJQK450转入异源宿主中。对获得的异源表达菌株进行发酵产物的制备,采用耻垢分枝杆菌mc2155作为指示菌株进行帕马霉素生物活性测试,并结合LC-MS的分析确定帕马霉素的产生情况。最后,通过基因失活与回补的方法,考察帕马霉素生物合成基因簇中调控蛋白PamR1和PamR2对帕马霉素生物合成的影响。【结果】帕马霉素生物合成基因簇在天蓝色链霉菌M1154中实现了表达,证明PamR1和PamR2负调控了帕马霉素生物合成的过程。【结论】帕马霉素完整基因簇的成功异源表达,一方面便于其生物合成途径的遗传改造,为帕马霉素的生物合成及优产改造研究奠定了基础;另外,调控基因功能的研究为帕马霉素的产量优化提供了改造的目标。  相似文献   

7.
【目的】新颖结构的天然萘醌-氧吲哚类生物碱coprisidins(A和B)分离自昆虫肠道相关链霉菌,具有预防癌症的活性。作为首例具有萘醌-氧吲哚骨架的生物碱,对其独特生物合成机理的研究可为Ⅱ型聚酮类化合物生物合成途径提供新的认知。【方法】本研究对coprisidins的产生菌Streptomycessp.SNU607进行全基因组测序,并根据测序结果的生物信息学分析初步定位coprisidins的生物合成基因簇;通过基因敲除以及异源表达手段确定coprisidins的生物合成基因簇;基于体内遗传学实验与生物信息学分析初步推导coprisidins的生物合成途径。【结果】Streptomyces sp. SNU607中有23个基因簇可能参与次级代谢,其中4个基因簇与聚酮合酶(PKS)相关;通过基因敲除与异源表达实验,本研究证实1个Ⅱ型PKS负责coprisidins的生物合成;基于生物信息学分析,我们推测copH/I/M/O/N构成了1个基因盒,并负责起始单元丁酰CoA的合成;KSβ(Cop B)的序列比对表明coprisidins的Ⅱ型PKS系统更倾向于合成C20的初始聚酮链。【结论】Coprisidins的萘醌-吲哚结构是由Ⅱ型PKSs催化形成,我们推测丁酰Co A是coprisidins聚酮骨架的起始单元,在最小PKS、聚酮酶、环化酶的催化下先形成类似蒽环的四环系统,随后在后修饰酶与氧化重排的作用下生成萘醌-氧吲哚骨架。本研究为进一步探究萘醌-氧吲哚类生物碱的生物合成机制奠定了基础,同时增加了Ⅱ型PKSs合成产物的结构多样性。  相似文献   

8.
【目的】从菌株Streptomyces albus DSM 41398的发酵产物中发掘结构多样的由I型聚酮合酶催化形成的化合物,以期找到具有新颖结构或强生物活性的化合物。在结构鉴定的基础上,对其生物合成途径进行分析。【方法】利用HPLC分析方法,通过系统比较野生型菌株S.albus DSM 41398与I型聚酮合酶编码基因簇失活突变株的发酵产物差异,实现目标化合物的定向分离。然后,利用~1H-和~(13)C-NMR以及HR-ESI-MS进行化合物的结构鉴定。最后,利用生物信息学等方法对化合物的生物合成途径进行推测和分析。【结果】从5 L的S.albus DSM 41398发酵产物中,分离得到了2个具有抗肿瘤活性的聚酮类化合物放线吡喃酮和洋橄榄菌素,分别定位了它们的生物合成基因簇,并分别对其生物合成途径进行了推导。其中,放线吡喃酮的生物合成基因簇为首次报道。【结论】本研究一方面为基因组发掘S.albus DSM 41398中其他由I型聚酮合酶催化形成的化合物提供参考,另一方面也为相关化合物的结构修饰改造奠定了良好的基础。  相似文献   

9.
【目的】分析洛伐他汀工业生产菌株土曲霉HZ01的次级代谢产物合成能力,为后期的遗传改造、次级代谢产物及其基因簇挖掘提供指导。【方法】对洛伐他汀发酵条件下的样品进行了转录组分析,同时运用色谱分离技术及波谱学方法对主要次级代谢产物进行了分离和结构鉴定。【结果】洛伐他汀合成相关基因转录水平非常高,还有4个聚酮合酶(PKS)、6个非核糖体多肽合成酶(NRPS)和1个PKS-NRPS杂合酶基因进行了转录,其他PKS和NRPS基因都处于沉默状态。此外,从该菌的发酵产物中分离鉴定了10个主要副产物并确定了其结构。【结论】土曲霉HZ01是一株优良的洛伐他汀生产菌株,在构建次级代谢产物异源合成细胞工厂和鉴定次级代谢产物生物合成途径方面具有很好的应用潜力。  相似文献   

10.
程永波  邓子新  刘天罡 《微生物学报》2015,55(11):1458-1467
摘要:【目的】监控大肠杆菌(Escherichia coli)主代谢通路上蛋白表达状况及中间代谢物变化,为代谢工程改造提供基础性数据及检测方法。【方法】利用Skyline软件靶向设计主代谢(糖酵解途径、磷酸戊糖途径、三羧酸循环、混合酸发酵途径及脂肪酸合成途径)目标蛋白质label-free (MRM)方法对其相对定量监控;在相同质谱平台(Triple Quad 4500)上利用LC-MS/MS(MRM)方法对目标中间代谢物绝对定量监控。【结果】实验表明不同生长时期内(对数生长期、稳定期及衰亡期)大肠杆菌主代谢蛋白质表达表现出4种不同的变化现象,某一代谢通路上的单一蛋白不能反映该通路的表达状态;磷酸戊糖途径、混合酸发酵途径以及三羧酸循环途径中较多的蛋白质在衰亡期表达量最高,但几种目标中间代谢产物(ATP、ADP、AMP、NAD+、NADH、NADP+、NADPH、CoA、acetyl-CoA)的积累量与对数生长期相比,稳定期及衰亡期都相应减少(除了acetyl-CoA以外)。【结论】该文中使用的检测方法可以有效地反映大肠杆菌体内代谢的基本状况。  相似文献   

11.
Results of molecular studies regarding the phylogenetic placement of the order Ostropales and related taxa within Lecanoromycetes were thus far inconclusive. Some analyses placed the order as sister to the rest of Lecanoromycetes, while others inferred a position nested within Lecanoromycetes. We assembled a data set of 101 species including sequences from nuLSU rDNA, mtSSU rDNA, and the nuclear protein-coding RPB1 for each species to examine the cause of incongruencies in previously published phylogenies. MP, minimum evolution, and Bayesian analyses were performed using the combined three-region data set and the single-gene data sets. The position of Ostropales nested in Lecanoromycetes is confirmed in all single-gene and concatenated analyses, and a placement as sister to the rest of Lecanoromycetes is significantly rejected using two independent methods of alternative topology testing. Acarosporales and related taxa (Acarosporaceae group) are basal in Lecanoromycetes. However, if the these basal taxa are excluded from the analyses, Ostropales appear to be sister to the rest of Lecanoromycetes, suggesting different ingroup rooting as the cause for deviating topologies in previously published phylogenies.  相似文献   

12.
The hypothesis that similar conidial morphologies in aquatic hyphomycetes are a result of convergent evolution was tested using molecular sequence data. Cladistic analyses were performed on partial sequences of 28S rDNA of seven species of Lemonniera, one species of Margaritispora and one species of Goniopila. Lemonniera has tetraradiate conidia with long arms, whereas Margaritispora and Goniopila have typically globose (isodiametric) conidia, with short conical protuberances in a stellate or quadrangular arrangement. Lemonniera and Margaritispora have phialidic conidiogenesis and both produce dark, minute sclerotia in culture whereas Goniopila has holoblastic conidiogenesis and does not produce sclerotia in culture. Goniopila produces a microconidial phialidic synanamorph in culture. All three genera have schizolytic conidial secession. Molecular analyses demonstrate that Lemonniera species are placed in two distinct clades: one within Leotiomycetes; the other within Pleosporales, Dothideomycetes. Margaritispora is placed with Lemonniera species within Leotiomycetes. Goniopila and Lemonniera pseudofloscula are placed within Dothideomycetes. No morphological character was entirely congruent with the molecular derived phylogeny. This suggests that for the group of species studied, conidial shape is not a reliable indicator of phylogeny but more likely the result of convergent evolution in response to the aquatic environment.  相似文献   

13.
We have cloned fourNeurospora crassagenes by complementation analysis. Cloned genes include thearginine-1(arg-1),methionine-6(met-6),unknown-7(un-7), andribosome production-1(rip-1) loci. Chromosome walks were initiated in ordered cosmid libraries from the cloned loci. A total of about 700 kb of theNeurosporagenome is covered in these walks.  相似文献   

14.
The morphology of many hypogeous fungi converges on a homogeneous reduced form, suggesting that disparate lineages are subject to a uniform selection pressure. The primary goal of this study was to evaluate the morphology and infer the phylogeny of the Leucogastrales with Mycolevis siccigleba using a Bayesian methodology. A comprehensive morphological assessment was used for an a priori phylogenetic inference to guide the sequencing effort. All structures except spore ornamentation pointed to the Albatrellaceae as the most likely sister taxon. Polyporoletus sublividus, a close relative of Albatrellus, produces ornamented basidiospores with a similar structure to M. siccigleba basidiospores. The ITS from 30 taxa was used for the molecular phylogenetic analysis. P. sublividus was found sister to Mycolevis. Leucophleps spinispora and L. magnata formed a group sister to the Polyporoletus/Mycolevis group, whereas Leucogaster was polyphyletic with respect to the core of the Leucogastrales and sister to A. caeruleoporus. This relationship was expected as previously undescribed chlamydospores produced by members of Albatrellus had a similar morphology to the basidiospores of L. rubescens.  相似文献   

15.
Data from microscopic morphology, single-spore cultures, and DNA analyses of teleomorphs and anamorphs support the recognition of five species of Prosthecium with Stegonsporium anamorphs on Acer: P. acerinum sp. nov., the teleomorph of S. acerinum; P. acerophilum comb. nov., formerly known as Dictyoporthe acerophila; P. galeatum comb. nov., originally described as Massaria galeata; P. opalus sp. nov.; and P. pyriforme sp. nov., the teleomorph of S. pyriforme s. str. The morphology of both type specimens and freshly collected material was investigated. The teleomorphs have brown ellipsoidal ascospores with five distosepta and often a longitudinal distoseptum. The anamorphs of all species described here belong to Stegonsporium; their connection to the Prosthecium teleomorphs was demonstrated by morphology and DNA sequences of single spore cultures derived from both ascospores and conidia. The anamorphs and teleomorphs of all five Prosthecium species are described and illustrated by LM images, and a key to these species is provided. As perceived from this work, S. pyriforme is restricted to Europe and does not occur in North America, whereas S. acerinum is restricted to North America, not found in Europe. The host associations given in the literature are revised and evidence is provided that only A. opalus, A. pseudoplatanus, and A. saccharum are confirmed hosts of Prosthecium with Stegonsporium anamorphs. Molecular phylogenetic analyses of tef1, ITS rDNA, and partial nuLSU rDNA sequences confirm that the species with Stegonsporium anamorphs are closely related to P. ellipsosporum, the generic type species. Stilbospora macrosperma is confirmed as the anamorph of P. ellipsosporum by DNA data of single spore isolates obtained from both ascospores and conidia.  相似文献   

16.
郭林 《菌物学报》1988,7(Z1):211-240
黑粉菌属是Roussel 1806年建立的,全世界记载有三百余种,主要寄生于禾本科,是经济作物及牧草的重要致病菌·长期以来,对黑粉菌的邢子使用过各种名称,如厚垣孢子,冬孢子及黑粉孢子等.本文采用黑粉孢子以区别锈菌的冬孢子. 芳’(1979)在《中国真菌总汇》中列出黑粉菌属五十种及一个变型.作者经过显微结构和超显微结构的研究,承认其中二十九种为正确名称,八种及一变型为异名,顶黑粉菌(Ustilago acrearus Berk.)由于错拼而被废弃.埃地黑粉菌(Ustilago emodensis Berk.)被转移至利罗粉菌属(Liroa).另有十一种黑粉菌因缺少标本留待今后订正.自1979年以后,杨信东(1983)增加黑粉菌属二种我国新纪录,K.范基和郭林(1986)描述一新种,四种新纪录.在本文中,作者描述一新种:鸢尾蒜黑粉(Ustilago ixiolirii Guo L) ,孢子堆生在蒴果内,不开裂,黑色,粉末状.黑粉孢子球形,近球形,稀椭圆形, 12.5-21×10-21μm,黑褐色,壁厚1-1.Sμm,纹饰脑状.是迄今生在石蒜科植物上唯一黑粉菌的种,其它几种黑粉菌均属条黑粉菌属.本文增加七种我国新纪录.共计四十九种,寄生于六科四十四属植物,主要是禾本科和蓼科.这仅是黑粉菌属研究的初步报告,在全国范围内大量采集黑粉菌标本后,作者相信会有更多新种和我国新纪录被发现.利罗黑粉菌属(Liroa)是从黑粉菌属(Ustaligo)分出的,此属为单种属.  相似文献   

17.
该研究以甘菊(Chrysanthemum lavandulifolium)为实验材料,通过RT-PCR方法从甘菊转录组数据中分离出热激蛋白合成相关基因,命名为ClHSP70和ClHSP90。序列分析表明,ClHSP70基因ORF全长为2 559bp,编码852个氨基酸,蛋白功能区预测表明含有典型的HSP70蛋白NBD和SBD保守结构域;ClHSP90基因ORF全长为2 094bp,编码697个氨基酸,含有HATPase结构域和HSP90保守结构域。生物信息学分析表明,甘菊ClHSP70与大豆(Glycine max)和烟草(Nicotiana tomentosiformis)HSP70蛋白有较高的一致性,ClHSP90基因编码的氨基酸序列与紫茎泽兰(Ageratina adenophora)HSP90高度相似;实时荧光定量表达分析表明,在42℃处理不同时间,甘菊叶片中ClHSP70和ClHSP90基因表达均在0.5h时显著增加,1h达到最大值,2h后缓慢下降;不同组织表达分析表明,甘菊在42℃处理1h后,ClHSP70在成熟叶中的表达量显著高于嫩叶和根等其他组织;ClHSP90在成熟茎中的表达量最高。研究说明,ClHSP70和ClHSP90基因具有热激蛋白特征,参与了甘菊热胁迫应答过程,该研究结果为以后深入研究其基因功能奠定了基础。  相似文献   

18.
Leveillula on monocotyledonous plants have been recorded as L. taurica by several authors, whereas the fungus on Allium has been described as an independent species, namely L. allii, by some authors. We sequenced ca 600 bp of the rDNA ITS region for two Leveillula specimens from Allium and Polianthes (both from monocotyledons) and compared them with several already published sequences from Leveillula isolates from dicotyledons. Pair-wise percentages of sequence divergences were calculated for all Leveillula isolates. The ITS sequence of the Polianthes isolate was identical to L. taurica on Helianthus and Vicia. The sequence of the Allium isolate was 99.5 % identical to L. taurica on Euphorbia, Haplophylum, Peganum, etc. These results suggest close relationships between monocot and dicot pathogenic Leveillula species. The identity between two monocot isolates was 98.4 %. Phylogenetic analysis revealed that the two monocot isolates do not group into a clade together. This result suggests that Leveillula acquired parasitism to monocots at least twice independently.  相似文献   

19.
The new genus and species Teracosphaeria petroica is described for a perithecial ascomycete and its anamorph occurring on decayed wood collected in New Zealand. The fungus produces immersed, non-stromatic ceratosphaeria-like perithecia in nature, with hyaline, septate ascospores produced in unitunicate, non-amyloid asci. The anamorph produced in vitro is phialophora-like with lightly pigmented phialides terminating in flaring, deep collarettes that are often noticeably brown with conspicuous periclinal thickening. Phylogenetic analysis of LSU rDNA sequence data indicates that this fungus is distinct from morphologically similar fungi classified in the Chaetosphaeriales, the Trichosphaeriales or the Magnaporthaceae. It forms a monophyletic group with recently described, chaetosphaeria-like ascomycetes, such as the pyrenomycete genus Mirannulata, and shows affinity with the anamorphic species Dictyochaeta cylindrospora. The usefulness of describing anamorph genera for morphologically reduced anamorphs, when anamorph characteristics are actually part of the holomorph diagnosis, is discussed. An apparently contradictory example of the so-called Cordana and Pseudobotrytis anamorphs of Porosphaerella spp. is also discussed.  相似文献   

20.
利用光学显微镜详细观察了叉蕨属(Tectaria)下延叉蕨(Tectaria decurrens)和芽胞叉蕨(T.fauriei)的配子体发育过程,记录了配子体各发育阶段的特征。结果表明:(1)下延叉蕨和芽胞叉蕨的孢子均为单裂缝,具周壁,由周壁形成纹饰,孢子极面观椭圆形,赤道面观豆形或肾形。(2)孢子萌发方式为向心型。(3)原叶体发育方式为三叉蕨型。(4)成熟原叶体心脏形,两翼向斜上方扩展。(5)均具单细胞和多细胞毛状体,在丝状体或片状体阶段出现。研究认为,从配子体发育角度看,叉蕨属是较进化的陆生真蕨类;毛状体的类型、位置和出现时间等特征在叉蕨属种间存在差异,可作为该属种间分类的特征。  相似文献   

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