Stable isotope records from otoliths as tracers of fish migration in a mangrove system

The ratios of stable isotopes ¹⁸O:¹⁶O and ¹³C:¹²C were measured in otolith carbon taken from nine species of fishes caught within mangroves and on the reef at Gazi Bay, Kenya. Before analysis, otoliths were divided into 'larval'post-larval' and 'adult' sections using a drill. Fishes were putatively classified as 'mangrove residents'offshore residents' or 'migrants' on the basis of information from the literature, and depending on where they were caught (mangroves only, offshore only or both mangroves and offshore) in the present study. Eight of the species exhibited an increase in otolith ¹³C:¹²C with age, but this was significant only in the two migrant species Lethrinus harak and Lutjanus fulviflammus . There were no consistent patterns in ¹⁸O:¹⁶O with age, or between migrants and non-migrants. These results suggest that comparing absolute values of otolith oxygen and carbon isotope signatures between fish species is not a useful way of determining migration patterns at this site, because of species-specific differences in carbon metabolism and insufficiently steep gradients in temperature and salinity. Changes in carbon isotope signatures between life stages within a species, however, do hold promise as migration tracers.     

Processes of organic carbon in mangrove ecosystems

In addition to carbon accumulation in plants, processes of organic carbon in mangrove ecosystems include origins of sediment organic carbon, carbon fluxes between mangroves and their adjacent systems (coastal waters and atmosphere), and cycling processes. Sediment organic carbon originates from suspending solids in coastal waters, mangrove plants and benthic algae. In mangroves with low organic carbon content in sediments, tidal seawater is the main origin of sediment organic carbon, while in mangroves with high sediment organic carbon contents, sediment organic carbon mainly originates from mangrove plants. Due to tidal flush, there is large material exchange between mangrove ecosystems and their adjacent coastal waters. In China, exports of organic carbon in litter falls and dissolved organic carbon from mangroves to their adjacent coastal waters have not been documented. Processes of mangrove litter falls, including production, decomposition, export and animal consumption, determine linkages among organic carbon among mangrove plants, secondary production and coastal ocean. Consumers especially benthic animals may influence organic carbon in mangrove ecosystems, because (1) their consumption rates are high, and their selective feeding on some food sources will change the relative quantities of export, bury and mineralization of organic carbon from different origins; (2) their consumption is much more than assimilation, resulting in the changes in sizes, forms and qualities of non-assimilated organic matters, and then the changes in availability of export, consumption or mineralization of organic carbon. Respiration and sulfate reduction are important mineralization processes of organic carbon in mangrove sediments. Mineralization rates of organic carbon in mangrove sediments are influenced by quantities, activities and particle sizes of organic matters, and other factors such as forest ages, root activities and animal burrowing activities. Researches on processes of mangrove organic carbon should be based on open systems, and ecological processes of organic carbon should be coupled with vegetation restoration.     

Processes of organic carbon in mangrove ecosystems

In addition to carbon accumulation in plants, processes of organic carbon in mangrove ecosystems include origins of sediment organic carbon, carbon fluxes between mangroves and their adjacent systems (coastal waters and atmosphere), and cycling processes. Sediment organic carbon originates from suspending solids in coastal waters, mangrove plants and benthic algae. In mangroves with low organic carbon content in sediments, tidal seawater is the main origin of sediment organic carbon, while in mangroves with high sediment organic carbon contents, sediment organic carbon mainly originates from mangrove plants. Due to tidal flush, there is large material exchange between mangrove ecosystems and their adjacent coastal waters. In China, exports of organic carbon in litter falls and dissolved organic carbon from mangroves to their adjacent coastal waters have not been documented. Processes of mangrove litter falls, including production, decomposition, export and animal consumption, determine linkages among organic carbon among mangrove plants, secondary production and coastal ocean. Consumers especially benthic animals may influence organic carbon in mangrove ecosystems, because (1) their consumption rates are high, and their selective feeding on some food sources will change the relative quantities of export, bury and mineralization of organic carbon from different origins; (2) their consumption is much more than assimilation, resulting in the changes in sizes, forms and qualities of non-assimilated organic matters, and then the changes in availability of export, consumption or mineralization of organic carbon. Respiration and sulfate reduction are important mineralization processes of organic carbon in mangrove sediments. Mineralization rates of organic carbon in mangrove sediments are influenced by quantities, activities and particle sizes of organic matters, and other factors such as forest ages, root activities and animal burrowing activities. Researches on processes of mangrove organic carbon should be based on open systems, and ecological processes of organic carbon should be coupled with vegetation restoration.     

Diurnal cycle of carbon isotope ratio in soil CO2 in various ecosystems

Our investigations of diurnal variations of the ¹³C/¹²C ratio and CO₂ content in soil air were carried out in three environments during periods of high biosphere activity. It has been observed that diurnal variation of CO₂ concentration is negatively correlated ¹³. Particularly great variations occurred at shallow soil depths (10–30 cm) when the plant cover activity was high while the soil temperature was rather low. Under such conditions the ¹³ variations had the magnitude of 4, while the CO₂ concentration varied more than doubly. The maximum of the ¹³C/¹²C ratlo and the minimum of the CO₂ concentration in a cultivated field with winter wheat took place in the afternoon, whereas in deciduous forest similar patterns were observed at dawn. In these cases soil temperatures at 10 cm depths varied less than 2°C. Hence, under wheat the variation in root respiration rate seem to be the main reason of the recorded varations. In an uncultivated grass-field during the hottest period in summer we did not measure any distinct variations of CO₂ properties in spite of the fact that soil temperature varied up to 5°C. This might be due to dominant microbial respiration at the high soil temperature, which exceeded 20°C.     

Stable carbon isotope ratio variations in marine macrophytes along intertidal gradients

Summary The hypothesis that relative water motion and boundary layer diffusion processes affect carbon isotope ratios of aquatic plants was tested in tidal pool and surge zone comparisons of the surfgrass Phyllospadix spp. No evidence was found that submerged plants growing in still upper tidal pools were isotopically different from those growing submerged in lower tidal surge zones. Significant decreases in ¹³C/¹²C ratios for plants growing emersed in the intertidal may have been caused by uptake of atmospheric carbon dioxide. Marine algae (Egregia menziesii and Halosaccion americanum) growing at the same location and tidal elevations as the seagrasses showed somewhat different isotopic fractionation patterns, suggesting that causes of isotopic variability in the seagrasses were not necessarily the same as those in the two marine algae.     

Factors regulating carbon sinks in mangrove ecosystems

Mangroves are recognized as one of the richest carbon storage systems. However, the factors regulating carbon sinks in mangrove ecosystems are still unclear, particularly in the subtropical mangroves. The biomass, production, litterfall, detrital export and decomposition of the dominant mangrove vegetation in subtropical (Kandelia obovata) and tropical (Avicennia marina) Taiwan were quantified from October 2011 to July 2014 to construct the carbon budgets. Despite the different tree species, a principal component analysis revealed the site or environmental conditions had a greater influence than the tree species on the carbon processes. For both species, the net production (NP) rates ranged from 10.86 to 27.64 Mg C ha^?1 year^?1 and were higher than the global average rate due to the high tree density. While most of the litterfall remained on the ground, a high percentage (72%–91%) of the ground litter decomposed within 1 year and fluxed out of the mangroves. However, human activities might cause a carbon flux into the mangroves and a lower NP rate. The rates of the organic carbon export and soil heterotrophic respiration were greater than the global mean values and those at other locations. Only a small percentage (3%–12%) of the NP was stored in the sediment. The carbon burial rates were much lower than the global average rate due to their faster decomposition, indicating that decomposition played a critical role in determining the burial rate in the sediment. The summation of the organic and inorganic carbon fluxes and soil heterotrophic respiration well exceeded the amount of litter decomposition, indicating an additional source of organic carbon that was unaccounted for by decomposition in the sediment. Sediment‐stable isotope analyses further suggest that the trapping of organic matter from upstream rivers or adjacent waters contributed more to the mangrove carbon sinks than the actual production of the mangrove trees.     

Organic carbon dynamics in mangrove ecosystems: A review

Our current knowledge on production, composition, transport, pathways and transformations of organic carbon in tropical mangrove environments is reviewed and discussed. Organic carbon entering mangrove foodwebs is either produced autochthonously or imported by tides and/or rivers. Mangrove litter and benthic microalgae are usually the most important autochthonous carbon sources. Depending on local conditions, phytoplankton and seagrass detritus imported with tides may represent a significant supplementary carbon input. Litter handling by the fauna not only affects microbial carbon transformations, but also the amount of organic carbon available for export. Most mangrove detritus that enters the sediment is degraded by microorganisms. Aerobic respiration and anaerobic sulfate reduction are usually considered the most important microbial respiration processes, but recent evidence suggests that iron respiration may be important in mangrove sediments as well. Organic carbon that escapes microbial degradation is stored in sediments and in some mangrove ecosystems, organic-rich sediments may extend to several meters depth. Many mangrove forests also lose a significant fraction of their net primary production to coastal waters. Large differences occur between mangrove forests with respect to litter production and export. Mangrove-derived DOC is also released into the water column and can add to the total organic carbon export. Numerous compounds have been characterized from mangrove tissues, including carbohydrates, amino acids, lignin-derived phenols, tannins, fatty acids, triterpenoids and n-alkanes. Many of these may, together with stable isotopes, exhibit a strong source signature and are potentially useful tracers of mangrove-derived organic matter. Our knowledge on mangrove carbon dynamics has improved considerably in recent years, but there are still significant gaps and shortcomings. These are emphasized and relevant research directions are suggested.     

Use of decreasing foliar carbon isotope discrimination during water limitation as a carbon tracer to study whole plant carbon allocation

Foliar carbon isotope discrimination (Δ) of C₃ plants decreases in water‐deficit situations as discrimination by the photosynthetic primary carboxylation reaction decreases. This diminished Δ in leaves under water deficit can be used as a tracer to study whole plant carbon allocation patterns. Carbon isotope composition (δ¹³C value) of leaf hot water extracts or leaf tissue sap represents a short‐term integral of leaf carbon isotope discrimination and thus represents the δ¹³C value of source carbon that may be distributed within a plant in water‐deficit situations. By plotting the δ¹³C values of source carbon against the δ¹³C values of sink tissues, such as roots or stems, it is possible to assess carbon allocation to and incorporation into sink organs in relation to already present biomass. This natural abundance labelling method has been tested in three independent experiments, a one‐year field study with the fruit tree species Ziziphus mauritiana and peach (Prunus persica), a medium‐term drought stress experiment with Ziziphus rotundifolia trees in the glasshouse, and a short‐term drought stress experiment with soybean (Glycine max). The data show that the natural abundance labelling method can be applied to qualitatively assess carbon allocation in drought‐stressed plants. Although it is not possible to estimate exact fluxes of assimilated carbon during water deficit the method represents an easy to use tool to study integrated plant adaptations to drought stress. In addition, it is a less laborious method that can be applied in field studies as well as in controlled experiments, with plants from any developmental stage.     

Cyanobacteria in mangrove ecosystems

Mangroves are subject to the effects of tides and fluctuations in environmental conditions, which may reach extreme conditions. These ecosystems are severely threatened by human activities despite their ecological importance. Although mangroves are characterized by a highly specialized but low plant diversity in comparison to most other tropical ecosystems, they support a diverse microbial community. Adapted microorganisms in soil, water, and on plant surfaces perform fundamental roles in nutrient cycling, especially nitrogen and phosphorus. Cyanobacteria contribute to carbon and nitrogen fixation and their cells act as phosphorus storages in ecosystems with extreme or oligotrophic environmental conditions such as those found in mangroves. As the high plant productivity in mangroves is only possible due to interactions with microorganisms, cyanobacteria may contribute to these ecosystems by providing fixed nitrogen, carbon, and herbivory-defense molecules, xenobiotic biosorption and bioremediation, and secreting plant growth-promoting substances. In addition to water, cyanobacterial colonies have been detected on sediments, rocks, decaying wood, underground and aerial roots, trunks, and leaves. Some mangrove cyanobacteria were also found in association to algae or seagrasses. Few studies on mangrove cyanobacteria are available, but together they have reported a substantial number of species in these ecosystems. However, the cyanobacterial diversity in this biome has been traditionally underestimated. Though mangrove communities generally host cyanobacterial taxa commonly found in marine environments, unique microhabitats found in mangroves potentially harbor several undescribed cyanobacterial taxa. The relevance of cyanobacteria for mangrove conservation is highlighted in their use for the recovery of degraded mangroves as biostimulants or in bioremediation.     

Stable carbon isotope fractionation by sulfate-reducing bacteria

Biogeochemical transformations occurring in the anoxic zones of stratified sedimentary microbial communities can profoundly influence the isotopic and organic signatures preserved in the fossil record. Accordingly, we have determined carbon isotope discrimination that is associated with both heterotrophic and lithotrophic growth of pure cultures of sulfate-reducing bacteria (SRB). For heterotrophic-growth experiments, substrate consumption was monitored to completion. Sealed vessels containing SRB cultures were harvested at different time intervals, and delta(13)C values were determined for gaseous CO(2), organic substrates, and products such as biomass. For three of the four SRB, carbon isotope effects between the substrates, acetate or lactate and CO(2), and the cell biomass were small, ranging from 0 to 2 per thousand. However, for Desulfotomaculum acetoxidans, the carbon incorporated into biomass was isotopically heavier than the available substrates by 8 to 9 per thousand. SRB grown lithoautotrophically consumed less than 3% of the available CO(2) and exhibited substantial discrimination (calculated as isotope fractionation factors [alpha]), as follows: for Desulfobacterium autotrophicum, alpha values ranged from 1.0100 to 1.0123; for Desulfobacter hydrogenophilus, the alpha value was 0.0138, and for Desulfotomaculum acetoxidans, the alpha value was 1.0310. Mixotrophic growth of Desulfovibrio desulfuricans on acetate and CO(2) resulted in biomass with a delta(13)C composition intermediate to that of the substrates. The extent of fractionation depended on which enzymatic pathways were used, the direction in which the pathways operated, and the growth rate, but fractionation was not dependent on the growth phase. To the extent that environmental conditions affect the availability of organic substrates (e.g., acetate) and reducing power (e.g., H(2)), ecological forces can also influence carbon isotope discrimination by SRB.     

Temporal variations in carbon isotope ratio of phytoplankton in a eutrophic lake

Temporal variations in carbon isotope ratio of phytoplanktonand dissolved inorganic carbon (DIC) in Lake Suwa were reported.In summer, blooming of Microcystis spp. resulted in low concentrationsof DIC and high pH, and HCO₃^– was the prominent speciesof DIC. Chlorophyll-specific rates of photosynthesis were relativelyconstant irrespective of the algal biomass during summer. Carboxylationin photosynthesis of Microcystis spp. was mainly catalyzed byribulose bisphosphate carboxylase (RuBPCase). Carbon isotopediscrimination between ¹³C of phytoplankton and DIC was considerablysmall in early summer and appeared to be negatively correlatedto DIC concentration. We concluded that carbon fixation by phytoplanktonin Lake Suwa is controlled not by the switch of photosyntheticpathways, but by low DIC concentration and high pH, suggestingthat photosynthesis of Microcystis spp. in Lake Suwa is governedby uptake kinetics other than the carboxylation step.     

Stable carbon isotope discrimination in the smut fungusUstilago violacea

Haploid strains 15.10, 1.C429, and 1.C2y and diploid strain JK2 ofUstilago violacea were grown on one or more of the following carbon sources: glucose, sucrose, maltose, inulin, starch, inositol, glycerol, casein, and yeast extract. The media, both before and after fungal growth, and the fungal cells were analyzed for ¹³C/¹²C content (δ¹³C values) using an isotope ratio mass spectrometer after combustion to CO₂. In all cases, the used and unused media had identical δ¹³C values. Strain 15.10 had significantly less¹³C than the media when grown on glucose, sucrose, maltose, and inositol; significantly more¹³C when grown on inulin, starch, and glycerol; and no significant difference in δ¹³C values when grown on casein and yeast extract media. Other haploid strains responded similarly to 15.10. Diploid strain JK2 was also depleted in¹³C when grown on glucose and enriched in¹³C when grown on glycerol; however, JK2 was slightly depleted in¹³C when grown on casein, whereas all the tested haploid strains were enriched in¹³C.     

Stable carbon and nitrogen isotope enrichment in primate tissues

Isotopic studies of wild primates have used a wide range of tissues to infer diet and model the foraging ecologies of extinct species. The use of mismatched tissues for such comparisons can be problematic because differences in amino acid compositions can lead to small isotopic differences between tissues. Additionally, physiological and dietary differences among primate species could lead to variable offsets between apatite carbonate and collagen. To improve our understanding of the isotopic chemistry of primates, we explored the apparent enrichment (ε*) between bone collagen and muscle, collagen and fur or hair keratin, muscle and keratin, and collagen and bone carbonate across the primate order. We found that the mean ε* values of proteinaceous tissues were small (≤1‰), and uncorrelated with body size or phylogenetic relatedness. Additionally, ε* values did not vary by habitat, sex, age, or manner of death. The mean ε* value between bone carbonate and collagen (5.6 ± 1.2‰) was consistent with values reported for omnivorous mammals consuming monoisotopic diets. These primate-specific apparent enrichment values will be a valuable tool for cross-species comparisons. Additionally, they will facilitate dietary comparisons between living and fossil primates.     

Stable carbon and nitrogen isotope ratio profiling of sperm whale teeth reveals ontogenetic movements and trophic ecology

Teeth from male sperm whales (Physeter macrocephalus) stranded in the North-eastern Atlantic were used to determine whether chronological profiles of stable isotope ratios of C (δ¹³C) and N (δ¹⁵N) across dentine growth layers could be used to detect known ontogenetic benchmarks in movements and trophic ecology. Profiles showed a general decrease in δ¹³C (median = 1.91‰) and an increase in δ¹⁵N (median = 2.42‰) with age. A marked decline in δ¹³C occurred for all 11 teeth around 9–10 years and again for six individuals around 20 years. After the early twenties the δ¹³C continued to decline with age for all teeth. These results are consistent with males segregating from natal groups in low latitudes with the onset of puberty between 4 and 15 years and gradually dispersing pole-ward into ¹³C-depleted temperate waters. Penetration into further depleted, productive high latitudes after the age of 20 might facilitate the spurt of accelerated growth rate observed around this age. Breeding migrations back to lower latitudes were not reflected in the δ¹³C profiles possibly due to being short compared to the time spent feeding in high latitudes. The timings of marked isotopic change in the δ¹⁵N profiles reflect those of the δ¹³C profiles, suggesting a link between dietary changes and movements. The observed increase in δ¹⁵N with age is likely to be caused by a trophic level increase as males grow in size, probably feeding on larger prey. An additional explanation could be that, in the higher latitudes of the North Atlantic, the main prey source is the high trophic level squid Gonatus fabricii. Also, the lower latitudes from where males disperse are depleted in basal ¹⁵N. Profiles of δ¹³C and δ¹⁵N in sperm whale teeth gathered from different regions, sexes, and periods in time, could provide a unique way to understand the ecology of this species across different oceans.     

Stable carbon isotope fractionation by acetotrophic sulfur-reducing bacteria

Acetate is the most important intermediate in anaerobic degradation of organic matter. The carbon isotope effects associated with the oxidation of acetate (ɛ_ac) were examined for four acetotrophic sulfur reducers, Desulfuromonas acetoxidans, Desulfuromonas thiophila, Desulfurella acetivorans , and Hippea maritima . During the consumption of acetate and sulfur, acetate was enriched in ¹³C by 11.5 and 11.2‰ in Desulfuromonas acetoxidans and Desulfuromonas thiophila , respectively. By contrast, isotope fractionation in D. acetivorans and H. maritima resulted in isotope enrichment factors of ɛ_ac=−6.3‰ and −8.4‰, respectively. These sulfur-reducing bacteria all metabolize acetate via the tricarboxylic acid cycle, but have different mechanisms for the initial activation of acetate. In Desulfuromonas acetoxidans , acetyl-CoA is formed by succinyl-CoA : acetate-CoA-transferase, and in D. acetivorans by acetate kinase and phosphate acetyltransferase. Hence, values of ɛ_ac seem to be characteristic for the type of activation of acetate to acetyl-CoA in acetotrophic sulfur reducers. Summarizing ɛ_ac-values in anaerobic acetotrophic microorganisms, it appears that isotope fractionation depends on the mechanism of acetate activation to acetyl-CoA, on the key enzyme of the acetate dissimilation pathway, and on the bioavailability of acetate, which all have to be considered when using δ¹³C of acetate in environmental samples for diagnosis of the involved microbial populations.     

不同产地三疣梭子蟹的稳定同位素比值特征及原产地溯源

探索稳定同位素对三疣梭子蟹产地溯源的可行性,可为保护地理标志产品、追溯原产地来源提供理论依据.本研究以黄海、渤海和东海3个主产区海域的三疣梭子蟹为对象,分析了其碳、氮稳定同位素值差异性和不同组织中稳定同位素比值的相关性.结果 表明:不同产地的碳、氮稳定同位素比值有显著性差异,不同组织之间有明显的同位素分馏效应.利用建立...     

Stable isotope probing of carbon flow in the plant holobiont

Stable isotope probing (SIP) approach in plant rhizosphere to analyse structure, diversity and function of active microorganisms through carbon utilisation.

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Stable isotope variability of meso-zooplankton along a gradient of dissolved organic carbon

1.  The δ¹³C and δ¹⁵N signatures of zooplankton vary with dissolved organic carbon (DOC), but inconsistent and limited taxonomic resolution of previous studies have masked differences that may exist among orders, genera or species and are attributable to dietary and/or habitat differences. Here we investigate differences among the isotopic signatures of five zooplankton taxa ( Daphnia , Holopedium , large Calanoida, small Calanoida and Cyclopoida) in Precambrian shield lakes with a sixfold range of DOC concentration.
2.  δ¹³C signatures of Daphnia , small calanoids and large calanoids became more depleted with increasing lake DOC, whereas Holopedium and cyclopoid δ¹³C became enriched with increasing DOC concentration.
3.  The variability of δ¹³C and δ¹⁵N isotopic signatures among zooplankton groups was reduced in high-DOC, compared to low-DOC lakes, especially for δ¹³C. Differences in δ¹³C and POM-corrected δ¹⁵N accounted for up to 33.7% and 19.5% of the variance, respectively, among lakes of varying DOC concentration.
4.  The narrow range of signatures found in higher DOC lakes suggests that different taxa have similar food sources and/or habitats. In contrast, the wide range of signatures in low-DOC lakes suggests that different taxa are exploiting different food sources and/or habitats. Together with the variable trends in zooplankton isotopic signatures along our DOC gradient, these results suggest that food web dynamics within the zooplankton community of temperate lakes will change as climate and lake DOC concentrations change.     

Leaf-twig carbon isotope ratio differences in photosynthetic-twig desert shrubs

Summary Carbon isotope ratios were determined for bulk tissues of both leaves and current season twigs of 29 species of Mohave Desert shrubs. Leaf and twig tissues were found to differ in their carbon isotope ratios, only in those species which had photosynthetic twigs. These data suggest that the twigs of these species operate at lower intercellular CO₂ values than leaves, an interpretation which is consistent with available gas-exchange data. An effect of microhabitat was also evident between the mean isotope ratios of leaves from wash versus slope habitats.This research has been supported by NSF Grant BSR-8410943 and by DOE Grant DE-FGO2-86ER60399.