Multilocus selection in subdivided populations I. Convergence properties for weak or strong migration

The dynamics and equilibrium structure of a deterministic population-genetic model of migration and selection acting on multiple multiallelic loci is studied. A large population of diploid individuals is distributed over finitely many demes connected by migration. Generations are discrete and nonoverlapping, migration is irreducible and aperiodic, all pairwise recombination rates are positive, and selection may vary across demes. It is proved that, in the absence of selection, all trajectories converge at a geometric rate to a manifold on which global linkage equilibrium holds and allele frequencies are identical across demes. Various limiting cases are derived in which one or more of the three evolutionary forces, selection, migration, and recombination, are weak relative to the others. Two are particularly interesting. If migration and recombination are strong relative to selection, the dynamics can be conceived as a perturbation of the so-called weak-selection limit, a simple dynamical system for suitably averaged allele frequencies. Under nondegeneracy assumptions on this weak-selection limit which are generic, every equilibrium of the full dynamics is a perturbation of an equilibrium of the weak-selection limit and has the same stability properties. The number of equilibria is the same in both systems, equilibria in the full (perturbed) system are in quasi-linkage equilibrium, and differences among allele frequencies across demes are small. If migration is weak relative to recombination and epistasis is also weak, then every equilibrium is a perturbation of an equilibrium of the corresponding system without migration, has the same stability properties, and is in quasi-linkage equilibrium. In both cases, every trajectory converges to an equilibrium, thus no cycling or complicated dynamics can occur.      

A genetic model with mutation and selection

Two deterministic models of a multiallele population in which mutation and selection both operate are considered, and formulae for the gene frequencies are obtained. Both models are of a diploid population in which selection is additive and mutation is general; generations are discrete and nonoverlapping. In the first model, the stationary solution of the discrete equations is found. In the second, the discrete time process is approximated by a continuous time one, and the resulting differential equations are solved. The transient case for two alleles is solved explicitly, and the results are graphed. An application is given to sequences of sites.     

Nonlinear theory of ion-acoustic waves in an ideal plasma with degenerate electrons

A nonlinear theory is constructed that describes steady-state ion-acoustic waves in an ideal plasma in which the electron component is a degenerate Fermi gas and the ion component is a classical gas. The parameter ranges in which such a plasma can exist are determined, and dispersion relations for ion-acoustic waves are obtained that make it possible to find the linear ion-acoustic velocity. Analytic gas-dynamic models of ion sound are developed for a plasma with the ion component as a cold, an isothermal, or an adiabatic gas, and moreover, the solutions to the equations of all the models are brought to a quadrature form. Profiles of a subsonic periodic and a supersonic solitary wave are calculated, and the upper critical Mach numbers of a solitary wave are determined. For a plasma with cold ions, the critical Mach number is expressed by an explicit exact formula.     

A framework for estimating the fixation time of an advantageous allele in stepping-stone models

Determining how population subdivision increases the fixation time of an advantageous allele is an important problem in evolutionary genetics as this influences many processes. Here, I lay out a framework for calculating the fixation time of a positively selected allele in a subdivided population, as a function of the number of demes present, the migration rate between them and the manner in which they are connected. Using this framework, it becomes clear that a beneficial allele's fixation time is significantly reduced through migration continuously introducing copies of the allele into a newly colonized subpopulation, increasing its frequency within these demes. The effect that migration has on allele frequency needs to be explicitly taken into account to produce a realistic estimate of fixation time. This behaviour is most prominent when demes are arranged on a two-dimensional torus, in comparison with populations where demes are arranged in a circle. This is because each subpopulation is connected to several neighbours over a torus, so that there are multiple paths that an allele can take in order to fix. As a consequence, some demes experience a greater influx and efflux of migrants than others. Analytical results are found to be very accurate when compared to stochastic simulations, and are generally robust if there are a large number of demes, or if the allele is weakly selected for.     

The Heart Ultrastructure in Two Species of Pycnogonids, and its Phylogenetic Implications

The heart of the pycnogonids Nymphon (Chaetonymphon) macronyx G. O. Sars and Boreonymphon cf. abyssorum Norman is pseudotubular and lacks an epicardium and an endocardium. The body wall forms the roof over the heart lumen. The myocardium is innvervated, and forms the lateral walls of the heart. Myofibres are absent in the midventral floor. This part is formed by cells of the horizontal septum attached to the gut complex. The myofibres are short. Interdigitating intercalated discs have not been observed, but lateral overlaps are common. Z-, I- and A-bands are seen in the sarcomere. The 2-bands are diffuse and irregular. The sarcolemma invaginates and forms a sparse system of clefts; a poorly developed T-system is indicated. Its presence supports the view that a T-system is inherent in the arthropod myocardium. Couplings are not related to any specific sarcomere band level. It is implied that the thin-walled pseudotubular heart in pycnogonids is a result of a reduction, and that it functions more like a channel than a heart.     

姜目芭蕉群植物种子解剖学研究及其系统学意义

研究了姜目芭蕉群代表植物象腿蕉属象腿蕉(Ensete glaucum)、旅人蕉属旅人蕉(Ravenala madagascariensis)与蝎尾蕉属Heliconia faranmansis?D6肿咏馄侍卣鳌＝峁砻鳎笸冉段藜僦制ぃ制し只霰砥ぁ⒑癖谧橹赴褪赴悖赴瞿谇邢虮谟刖断虮谠龊瘢缓系闱哂泻系闶矣牒系愣眩谥制ち恢榭浊兄榭琢旌涂赘堑姆只榭琢煳涡停赘侵挥赡谥制は赴钩桑褐榭浊制ぱ由煨纬芍制昵唬和馀呷?层细胞：内胚乳细胞径向延长,细胞内充满淀粉粒。旅人蕉具假种皮,种皮分化出外种皮、中种皮和内种皮,外种皮细胞纵向延长,中种皮为7-9层切向延长的薄壁细胞,内种皮为石细胞型：合点区无合点室,内种皮在此出现缺口,缺口为整体轮廓呈喇叭形的近等径薄壁细胞群填充;珠孔区无珠孔领与孔盖的分化：外胚乳缺,内胚乳发达。蝎尾蕉属的Heliconia faranmansis?D6肿游藜僦制ぃ制の薹只墒闾寤闲∏揖断蜓映げ⑴帕形だ缸吹谋”谙赴钩桑褐榭锥酥制は蛲庋由欤纬衫嗨平浦肿拥闹指纷唇峁梗何蘅赘怯胫榭琢斓哂杏晒ば纬傻挠不牵缓系闱肼萌私断嗨疲煌馀呷樵?-4层细胞,细胞壁波浪形弯曲,内胚乳发达。综合作者对兰花蕉(Orchidanha chinensis)和前人对芭蕉群的种子解剖学研究结果,初步总结了芭蕉群种子解剖学特征及其进化式样,讨论了姜目芭蕉群四科种子解剖学特征的系统分类学意义。     

Bioethics, vulnerability, and protection

What makes individuals, groups, or even entire countries vulnerable? And why is vulnerability a concern in bioethics? A simple answer to both questions is that vulnerable individuals and groups are subject to exploitation, and exploitation is morally wrong. This analysis is limited to two areas. First is the context of multinational research, in which vulnerable people can be exploited even if they are not harmed, and harmed even if they are not exploited. The type of multinational research likely to raise the most ethical concerns is that in which the investigators or sponsors are from a powerful industrialised country or a giant pharmaceutical company and the research is conducted in a developing country. Second is the situation of women, who are made vulnerable in cultural settings or in entire countries in which they are oppressed and powerless. In the face of cultural values and practices, or governmental policies, these women suffer serious consequences for their health and even lives. Examples are provided, and it is suggested that in some cases vulnerable individuals can be harmed but not exploited. On the positive side, recent developments reveal a new awareness of exploitation and efforts to enhance the ability of developing countries to protect themselves and their citizens from exploitation at the hands of powerful sponsors of research. In addition, human rights principles are increasingly being used to monitor the actions (or inaction) of governments regarding women's reproductive rights and vulnerability with respect to HIV/AIDS, and to take remedial actions.     

Design and analysis of experiments on mutagenicity. II. Assays involving microorganisms.

The design and statistical analysis of mutagenicity experiments involving microorganisms and a single dose of mutagen are discussed. Test statistics are derived for use in determining the mutagenicity of a chemical when survival data are available and also when such data are not available. One's likelihood (power) of correctly concluding a chemical is mutagenic is examined, and minimum total sample sizes required for 95% power are presented. It is found that one generally has greater power when survival data are available. Required precision is estimating survival is discussed in reference to type-1 and type-2 errors. The proper use of the formulae and figures presented is illustrated by examples.     

Quantitative genetic models for describing simultaneous and recursive relationships between phenotypes

Multivariate models are of great importance in theoretical and applied quantitative genetics. We extend quantitative genetic theory to accommodate situations in which there is linear feedback or recursiveness between the phenotypes involved in a multivariate system, assuming an infinitesimal, additive, model of inheritance. It is shown that structural parameters defining a simultaneous or recursive system have a bearing on the interpretation of quantitative genetic parameter estimates (e.g., heritability, offspring-parent regression, genetic correlation) when such features are ignored. Matrix representations are given for treating a plethora of feedback-recursive situations. The likelihood function is derived, assuming multivariate normality, and results from econometric theory for parameter identification are adapted to a quantitative genetic setting. A Bayesian treatment with a Markov chain Monte Carlo implementation is suggested for inference and developed. When the system is fully recursive, all conditional posterior distributions are in closed form, so Gibbs sampling is straightforward. If there is feedback, a Metropolis step may be embedded for sampling the structural parameters, since their conditional distributions are unknown. Extensions of the model to discrete random variables and to nonlinear relationships between phenotypes are discussed.     

A Trichrome Stain for Insect Material

Deparaffinized insect sections are brought down to water and overstained in a 0.1% solution of azocarmine G in 1% acetic acid. They are then destained in a saturated solution of orange G until the azocarmine G is removed from the endocuticle and the latter is colored pale yellow. After washing, the sections are transferred to a 5.0 % solution of phosphotungstic acid in water for 3 min. They are then rinsed in distilled water and stained in a 0.1% solution of methyl green in 1% acetic acid until the endocuticle is green. Differentiation is done in 2 changes of 95% alcohol. The sections are then dehydrated either in absolute alcohol or dioxane, cleared in a mixture of “camsal”, eucalyptol, dioxane, and paraldehyde (1:2:2:1), and mounted in Mohr and Wehrle's medium, a mountant of the Euparal type.     

Observations on the genus Pandanus in Madagascar

The sections of the genus Pandanus which occur in Madagascar are the main subject of this paper. There are 75 species in the island, of which all, or all but one, are endemic. They can be grouped into 12 sections, of which six are endemic, and one is a local endemic subsection. The other sections occur elsewhere, mainly in Africa, but two to the east. A key to the sections is given, and a discussion of field recognition characters is included. One new section and one new subsection are proposed. New lectotypifications for Sections Sussea and Vinsonia are suggested. The Madagascar species of Thouars are discussed. Finally a resume of some recent collections is presented.     

The loss in power when the test of differential expression is performed under a wrong scale.

One of the most common and important goals of microarray studies is to identify genes that are differentially expressed between cells of different conditions. T-test and ANOVA models on the expression data are common practices to gauge the significance of the observed difference in expression levels. Transformation of the microarray data is often applied in order to satisfy the model assumptions being entertained. However, the distributional properties of the expression are gene specific, and it is impractical to find a single transformation that is universally optimal for all the genes. This difficulty results in the situation that some genes have to violate the assumptions of the model (e.g., homogeneity in variance, normality). It is thus the interest of this paper to evaluate the impact on the inference of differential expression when the test is performed under an inappropriate scale. Particularly, we quantitatively assess the loss of power when the test is performed under a wrong scale. Normal distribution and log-normal distribution of the expression data are considered. The loss in power is investigated in two scenarios: a transformation is misused, or a transformation fails to be applied. Log transformation and power transformation are particularly considered due to the fact that Box-Cox types of transformation are commonly used in practice. The impact of using a wrong scale is investigated analytically and based on simulations. The loss in power is assessed both as a function of the degree to which the assumptions are violated and as a function of the effect size. Simulations are conducted to quantitatively assess the power loss when tests are performed under a wrong scale. A public experimental microarray dataset is used to illustrate the impact of transformation on the results of testing differential expression. The results show that the loss of power is a function of CV and fold-change (effect size). The loss in power depends on the true model and on how severely the assumptions are violated.     

Studies of Ultrastructure and ATPase Localization of Mature Embryo Sac in Vicia faba L.

Studies of ultrastructure and ATPase localization of the mature embryo sac in Vicia faba L. show that the egg cell has no cell wall at thechalazal end, it has a chalazally located nucleus and a large micropylar vacuole. There are many nuclear pores in the nuclear membrane. The cytoplasm is restricted around the nucleus. Dictyosome and mitochondria are few. There are some starch grains and lipid grains in the egg cytoplasm. There are no obvious differences between two synergids. No cell wall is seen at the chalazal end either, but there are some vesicles which project to vacuole of the central cell and fuse with its vacuolar membrane. Plasmodesmata connections occur within the synergid wall where it is adjacent to the central cell. The synergid has a micropylarly located nucleus and a chalazal vacuole, the nucleus is irregularly shaped. The synergid cytoplasm is rich in organelles. The filiform aparatus is of relatively heterogeneous structure. The central cell is occupied by a large vacuole and its cytoplasm is confined to a thin layer along the empryo sac wall, but is rich in various organelles, starch grains and lipid bodies. Nucleolar vacuoles are often present two polar nuclei. The nuclear membranes of two polar nuclei have partly fused. ATPase reactive product was located obviously at the endoplasmic reticulum in cytoplasm of the egg cell and central cell. The embryo sac wall consists of different density of osmiophilic layer. There are some wall ingrowths in chalazal region of the embryo sac. The long-shaped and cuneate cells of chalazal region are peculiar. Special tracks of ATPase reactive products are visible at their intercellular space which may be related to transportation of nutrients.     

Modeling capsid self-assembly: design and analysis

A series of simulations aimed at elucidating the self-assembly dynamics of spherical virus capsids is described. This little-understood phenomenon is a fascinating example of the complex processes that occur in the simplest of organisms. The fact that different viruses adopt similar structural forms is an indication of a common underlying design, motivating the use of simplified, low-resolution models in exploring the assembly process. Several versions of a molecular dynamics approach are described. Polyhedral shells of different sizes are involved, the assembly pathways are either irreversible or reversible and an explicit solvent is optionally included. Model design, simulation methodology and analysis techniques are discussed. The analysis focuses on the growth pathways and the nature of the intermediate states, properties that are hard to access experimentally. Among the key observations are that efficient growth proceeds by means of a cascade of highly reversible stages, and that while there are a large variety of possible partial assemblies, only a relatively small number of strongly bonded configurations are actually encountered.     

扬子鳄皮肤腺结构与发育的初步观察

扬子鳄有三种皮肤腺:背腺、泄殖腔麝腺和下颌腺。背腺位于背中线左右两侧第二行鳞片下方,其确切位置个体间差异很大,如表1。幼鳄背腺形态多种多样,但显示出是一种退化器官,未观察到腺开口,也未观察到半成鳄和成鳄的背腺,因此扬子鳄背腺可能不具功能。泄殖腔麝腺位于泄殖腔腹唇内,梨形,腺管开口于泄殖腔腹壁,成体腺腔很大,腺的底部壁较厚,腺细胞明显地分成若干小叶,其它部位壁较薄,小叶不明显,属全泌腺,分泌油脂物,繁殖期特别发达,但性未成熟个体亦具功能,是一种信息素下颌腺位于下颌后方两侧皮肤内,圆柱状,脉管开口于下颌腹侧皮肤表面,成体腺腔不规则,腺壁厚,从包囊到腺腔,腺细胞可明显地分成三个区,属全泌腺,分泌油脂物,在繁殖期特别发达,此腺到性成熟才具功能。     

Allelic Negative Complementation at the Abruptex Locus of DROSOPHILA MELANOGASTER

The mutations of the Abruptex locus in Drosophila melanogaster fall into three categories. There are recessive lethal alleles and viable alleles. The latter can be divided into suppressors and nonsuppressors of Notch mutations. The recessive lethals are lethal in heterozygous combination with Notch. As a rule the recessive lethals are lethal also in heterozygous combination with the viable alleles. Heterozygous combinations of certain viable alleles are also lethal. In such heterozygotes, one heteroallele is a suppressor of Notch and the other is a nonsuppressor. Other heterozygous combinations of viable alleles are viable and have an Abruptex phenotype. The insertion of the wild allele of the Abruptex locus as an extra dose (carried by a duplication) into the chromosomal complement of the fly fully restores the viability of the otherwise lethal heterozygotes if two viable alleles are involved. The extra wild allele also restores the viability of heterozygotes in which a lethal and a suppressor allele are present. If, however, a lethal and a nonsuppressor are involved, the wild allele only partly restores the viability, and the effect of the wild allele is weakest if two lethal alleles are involved. It seems likely that of the viable alleles the suppressors of Notch are hypermorphic and the nonsuppressors are hypomorphic. The lethal alleles share properties of both types, and are possibly antimorphic mutations. It is suggested that the locus is responsible for a single function which, however, consists of two components. The hypermorphic mutations are defects of the one component and the hypomorphic mutations of the other. In heterozygotes their cumulative action leads to decreased viability. The lethal alleles are supposed to be defects of the function as a whole. The function controlled by the locus might be a regulative function.     

Ultrastructural and biochemical studies of the swelling of developing chick telencephalic slices

Summary An ultrastructural and biochemical study of the importance and localization of tissue swelling was performed on telencephalic slices of 1- and 30-day-old chicks incubated in an oxygenated or a non-oxygenated physiological medium. The swelling of slices is greater for 30-day-old chick material than for that from 1-day-old chicks. It also reaches higher values in the non-oxygenated than in the oxygenated medium. When the 30-day-old chick telencephalic slices are incubated in an oxygenated medium, swelling mainly affects astrocytes, and especially the astrocytic endfeet. When they are incubated in a non-oxygenated medium, the astrocytes and astrocytic endfeet are very swollen and in addition the swelling also affects the neurons and their organelles. Extracellular space is increased. When 1-day-old chick telencephalic slices are incubated in a non-oxygenated medium, the tissue structures are well preserved. Swelling predominantly affects astrocytes and astrocytic endfeet. Neurons are not affected and the extracellular space is reduced. However, when they are incubated in an oxygenated medium, tissue structures are greatly affected showing a high degree of disorganization. Extracellular space is greatly increased. This study thus indicates that the best incubation conditions are an oxygenated medium for 30-day-old chick telencephalic slices which are characterized by an aerobic metabolism, and a non-oxygenated medium for 1-day-old chick telencephalic slices which have a predominantly anaerobic metabolism.     

Vegetative anatomy of subtribe Habenariinae (Orchidaceae)

Leaves of Habenariinae are characterized by anomocytic stomatal apparatuses, homogeneous mesophyll, collateral vascular bundles in a single series, and thin-walled bundle sheath cells. There is no foliar sclerenchyma nor a hypodermis. Cauline cortex consists of thin-walled living cells among which are large and numerous intercellular spaces. The ground tissue is bordered externally by a layer of thick-walled living cells, except in Habenaria repens. Central ground tissue cells are living, and usually thin-walled surrounding intercellular spaces of various dimensions. These are conspicuously large in H. repens. Collateral vascular bundles are scattered across the ground tissue. Sclerenchyma is absent. Absorbing roots are generally velamentous, exodermal dead cells are diin-walled, and passage cells usually have a thickened outer wall. A regular vascular cylinder is present, and vascular tissue is embedded in parenchyma. Root tubers are velamentous, exodermal cells are usually thin-walled, and passage cells frequently have thickened outer walls. Vascular tissue of root tubers is organized into two classes: (1) those with a single vascular cylinder surrounded by a cortex and (2) those with a series of meristeles dispersed throughout the ground tissue. In group (1) cortex is homogeneous either with or without mucilage cells except in Stenoglattis where the cortex is heterogeneous, consisting of water-storage and assimilatory cells, and lacks mucilage cells. In group (2) the ground tissue consists of larger mucilage-containing cells and smaller assimilatory cells.     

Sarcoidosis and Polyarthritis

Polyarthritis is a well-recognized manifestation of sarcoidosis, but the various series of cases reported in the literature reveal considerable variation in its incidence as well as in its clinical manifestations. Three major types of sarcoid polyarthritis are defined, as distinguished by their clinical and pathological features. Two of these types are usually seen in conjunction with the subacute or transient form of sarcoidosis and, in most cases, are accompanied by erythema nodosum. They differ markedly in severity, but their prognosis is uniformly good. The third type, in contrast, is of a chronic nature and is often associated with permanent joint changes. Mild joint manifestations are a frequent finding in sarcoidosis, but more severe arthritis is relatively rare.Two cases of sarcoidosis, presenting with severe polyarthritis, are reported in detail, and cases seen in Halifax hospitals during the period 1954 to 1964 are reviewed.