The unusual tetrasaccharide sequence GlcA{beta}-3GalNAc(4-sulfate)({beta}1-4GlcA(2-sulfate){beta}1-3GalNAc(6-sulfate) found in the hexasaccharides prepared by testicular hyaluronidase digestion of shark cartilage chondroitin sulfate D

Eight hexasaccharide fractions were isolated from commercialshark cartilage chondroitin sulfate D by means of gel nitrationchromatography and HPLC on an amine-bound silica column afterexhaustive digestion with sheep testicular hyaluronidase. Capillaryelectrophoresis of the enzymatic digests as well as one- andtwo-dimensional 500 MHz ¹H-NMR spectroscopy demonstrated thatthese hexasaccharides share the common core saccharide structureGlcAß1-3GalNAcß1-4GlcAß1-3GalNAcß1-4GlcAß1-3GalNAcwith three, four, or five sulfate groups in different combinations.Six structures had the same sulfation profiles as those of theunsaturated hexasaccharides isolated from the same source afterdigestion with chondroitinase ABC (Sugahara et al., Eur. J.Biochem., 293, 871–880, 1996) and the other two have notbeen reported so far. In the new components, a D disaccharideunit, GlcA(2-sulfate)ß1-3GalNAc(6-sulfate), characteristicof chondroitin sulfate D was arranged on the reducing side ofan A disaccharide unit, GlcAß1-3GalNAc(4-sulfate),forming an unusual A-D tetrasaccharide sequence, GlcAß1-3GalNAc(4-sulfate)-4GlcA(2-sulfate)ß1-3GaINAc(6-sulfate)which is known to be recognized by the monoclonal antibody MO225.These findings support the notion that the tetrasaccharide sequence,GlcAß1-3GalNAc(4-sulfate)ß1-4GlcAß1-3GalNAc(6-sulfate)is included in the acceptor site of a hitherto unreported 2-O-sulfotransferaseresponsible for its synthesis. The sulfated hexasaccharidesisolated in this study will be useful as authentic oligosaccharideprobes and enzyme substrates in studies of sulfated glycosaminogly-cans. sulfated hexasaccharides chondroitin sulfate D hyaluronidase ¹ H-NMR     

A systems analysis of importin-{alpha}-{beta} mediated nuclear protein import

Importin-beta (Impbeta) is a major transport receptor for Ran-dependent import of nuclear cargo. Impbeta can bind cargo directly or through an adaptor such as Importin-alpha (Impalpha). Factors involved in nuclear transport have been well studied, but systems analysis can offer further insight into regulatory mechanisms. We used computer simulation and real-time assays in intact cells to examine Impalpha-beta-mediated import. The model reflects experimentally determined rates for cargo import and correctly predicts that import is limited principally by Impalpha and Ran, but is also sensitive to NTF2. The model predicts that CAS is not limiting for the initial rate of cargo import and, surprisingly, that increased concentrations of Impbeta and the exchange factor, RCC1, actually inhibit rather than stimulate import. These unexpected predictions were all validated experimentally. The model revealed that inhibition by RCC1 is caused by sequestration of nuclear Ran. Inhibition by Impbeta results from depletion nuclear RanGTP, and, in support of this mechanism, expression of mRFP-Ran reversed the inhibition.     

Converting a {beta}-glycosidase into a {beta}-transglycosidase by directed evolution

Directed evolution was applied to the beta-glycosidase of Thermus thermophilus in order to increase its ability to synthesize oligosaccharide by transglycosylation. Wild-type enzyme was able to transfer the glycosyl residue with a yield of 50% by self-condensation and of about 8% by transglycosylation on disaccharides without nitrophenyl at their reducing end. By using a simple screening procedure, we could produce mutant enzymes possessing a high transferase activity. In one step of random mutagenesis and in vitro recombination, the hydrolysis of substrates and of transglycosylation products was considerably reduced. For certain mutants, synthesis by self-condensation of nitrophenyl glycosides became nearly quantitative, whereas synthesis by transglycosylation on maltose and on cellobiose could reach 60 and 75%, respectively. Because the most efficient mutations, F401S and N282T, were located just in front of the subsite (-1), molecular modeling techniques were used to explain their effects on the synthesis reaction; we can suggest that repositioning of the glycone in the (-1) subsite together with a better fit of the acceptor in the (+1) subsite might favor the attack of a glycosyl acceptor in the mutant at the expense of water. Thus these new transglycosidases constitute an interesting alternative for the synthesis of oligosaccharides by using stable and accessible donor substrates.     

The Biosynthesis of {beta}-Pyrazol-l-ylalanine

ß-Pyrazol-I-ylalanine, an isomer of histidine, occursin large amounts in several cucurbitaceous species. Enzymicsynthesis of the new amino-acid is shown to occur by the condensationof pyrazole and serine in an analogous manner to that in whichtryptophan is synthesized from indole and serine. The propertiesand distribution of the new enzyme, called ß-pyrazol-I-ylalaninesynthetase, have been studied using crude extracts of cucumberseedlings. The enzyme has also been demonstrated in extractsof other cucurbit seedlings. A chemical synthesis of ß-pyrazol-I-ylalanine fromserine and pyrazole adapted from the enzymic pathway has beenused to demonstrate indirectly the presence of pyrazole in cucumberand melon seeds.     

Biosynthesis of Xyloglucan in Suspension-cultured Soybean Cells. Evidence that the Enzyme System of Xyloglucan Synthesis does not Contain {beta}-1,4-Glucan 4-{beta}-D-Glucosyltransferase Activity (EC 2.4.1.12)

Xyloglucan 4-ß-D-glucosyltransferase, an enzyme responsiblefor the formation of the xyloglucan backbone, in a particulatepreparation of soybean cells has been compared with ß-1,4-glucan4-ß-D-glucosyltransferase of the same origin. Thefollowing observations indicate that the enzyme system of xyloglucansynthesis does not contain ß-1,4-glucan 4-ß-D-glucosyltransferaseactivity, although both enzymes transfer the glucosyl residuefrom UDP-glucose to form the ß-1,4-glucosidic linkage:1. The incorporation of [¹⁴C]glucose into xyloglucan dependedon the presence of UDP-xylose in the incubation mixture. 2.No measurable amount of radioactivity was incorporated fromUDP-[¹⁴C]xylose into the cello-oligosaccharides, although theincorporation of [¹⁴C]xylose into xyloglucan depended on thepresence of UDP-glucose in the incubation mixture (Hayashi andMatsuda 1981b). 3. The activity of xyloglucan 4-ß-D-glucosyltransferasewas stimulated more strongly by Mn²⁺ than by Mg²⁺, whereas Mg²⁺was the most active stimulator for the activity of ß-1,4-glucan4-ß-D-glucosyltransferase. 4. An addition of GDP-glucose(100 µM) to the incubation mixture inhibited the activityof xyloglucan 4-ß-D-glucosyltransferase by 17%, whereasthe activity of ß-1,4-glucan 4-ß-D-glucosyltransferasewas inhibited 56% under the same conditions. 5. Irpex exo-cellulasedid not hydrolyze the xyloglucan synthesized in vitro. 6. Theß-1,4-glucan synthesized in vitro was not a branchedxyloglucan because it gave no 2,3-di-O-methyl glucose derivativeon methylation analysis. 7. Pulse-chase experiments indicatedthat the ß-1,4-glucan was not transformed into thexyloglucan. The subcellular distribution of the xyloglucan synthase, however,was similar to that of the ß-1,4-glucan synthase (Golgi-located1,4-ß-D-glucan 4-ß-D-glucosyltransferase).Thus, it appears that the latter enzyme is located at a siteclose to xyloglucan synthase and is set aside for the assemblyof these polysaccharides into the plant cell surface. (Received May 21, 1981; Accepted October 13, 1981)     

Identification of rat {alpha}1 macroglobulin as an inhibitor of rat Gal{beta}1-4GlcNAc {alpha}2-6 sialyltransferase

Rat serum was found to contain an inhibitor of pure     

Modulation of Elicitor-Induced Chitinase and {beta}-1,3-Glucanase Activity by Hormones in Phaseolus vulgaris

Chitinase and ß-1 ,3-glucanase induction in Phaseolusvulgaris by cell wall elicitor from Col-letotrichum lindemuthianumhas been studied together with the effects of the hormones IAAand ethylene. Chitinase and ß-1, 3-glucanase increasedin response to the elicitor in the resistant cultivar, Kievit,but not in the susceptible cultivar, Pinto. However, both activitiesincreased in both cultivars in response to hormones in the absenceof elicitor; elicitor did not augment this response in cv. Kievit.Aminoethoxyvinyl glycine (AVG) abolished all responses exceptthose obtained by the application of ethylene. Of other hydrolasestested, only ß -galactosidase was induced by elicitor;this was similar for both cultivars but hormones were withouteffect. Evidence suggests that both chitinase and ß-l,3-glucanase are located within the cell rather than in theintercellular space. It is concluded that chitinase and ß;-l,3-glucanaseare coordinately synthesized as a defence response since theyhydrolyse complementary linkages in pathogen derived polysac-charides.Regulation of the induction of the two enzymes is primarilydue to ethylene and the lack of response in the compatible reactionappears to arise from an inability to synthesize ‘ stress’ ethylene. ¹Present address: School of Chemistry, Molecular and Biological Sciences, University of Sussex, Brighton BN1 9QJ, U.K. (Received March 15, 1991; Accepted June 13, 1991)     

Purification and Properties of a Wall-Bound Endo-1,4-{beta}-Glucanase from Suspension-Cultured Poplar Cells

A wall-bound endo-1,4-ß-glucanase (EC 3.2.1.4 [EC] ) wasobtained from a preparation of the cell walls of suspension-culturedpoplar cells and purified to electrophoretic homogeneity bycation-exchange, hydrophobic, and gel-filtration chromatography.The molecular mass was estimated to be 47 kDa by SDS-PAGE and48 kDa by gel filtration on Superdex 200 pg. The isoelectricpoint (pI) was 5.6. The purified enzyme catalyzed the endo-hydrolysisof carboxymethylcellulose with an optimal pH of 6.5, a K_m of1.2 mg ml^-1, and a V_max of 280 units. The purified enzyme specificallyhydrolyzed the 1,4-ß-glucosyl linkages of carboxymethylcellulose,phospho-swollen cellulose, lichenan, xylan and xyloglucan. Theactivity of the enzyme was strongly stimulated by cysteine-HCl.The N-terminal sequence of the enzyme was similar to that ofan extracellular endo-1,4-ß-glucanase found in suspensioncultures of poplar cells and some homology was recognized toavocado fruit-ripening and bean abscission endo-1,4-ß-glucanases. ¹This work was supported in part by a grant from the Toray ScienceFoundation, Japan, and by a Grant-in-Aid from the Ministry ofEducation, Science and Culture of Japan.     

Endo-1,4-{beta}-Glucanase in the Cell Wall of Stems of Auxin-Treated Pea Seedlings

Endo-1,4-ß-glucanase induced by treatment of pea seedlingswith 2,4-D was extracted from a preparation of the walls ofepicotyl cells. The ß-glucanase was purified by chromatographyon DEAE-cellulose, affinity chromatography on Con A-Sepharoseand SDS-polyacrylamide gel electrophoresis (SDS-PAGE). The activityof ß-glucanase was retained after removal of SDS andextraction from polyacrylamide gels. The band of a protein (46kDa), that corresponded to the activity of endo-1,4-ß-glucanase,was injected directly into mice for preparation of antiserumand the protein was also subjected to amino acid sequencingafter blotting onto a membrane. Western blot analysis showedthat the antiserum obtained bound to a 46-kDa polypeptide andrecognized endo-1,4-ß-glucanase. The N-terminal sequenceof the 46-kDa polypeptide revealed some homology to abscissionendo-1,4-ß-glucanases of bean and avocado fruit. (Received September 29, 1993; Accepted January 20, 1994)     

Incorporation of r{beta}-hydroxy-r{beta}-methylglutaric acid into carotenoids and other ether soluble compounds in maize seedlings

3-¹⁴C-rß-hydroxy-rß-methylglutaric acid(HMG) was effectively incorporated into isoprenoids by excisedetiolatcd shoots as well as by the cell-free extracts of maize.The rate of incorporation indicated that HMG was not degradedto acetate or acetoacetate before entering the isoprenoid pathway.HMG and HMG-CoA were equally incorporated by the soluble extractinto carotenoids indicating that, in addition to HMG-CoA reductase(EC.1.1.1.34), HMG activating enzyme was also present in theplant. The soluble system (20,000 x g fraction) showed a pHoptimum of 7. Endogenous metabolites such as mevalonic acid(MVA) in the reaction mixture decreased the incorporation ofHMG into isoprenoids. (Received September 21, 1971; )     

Structural analysis of oligosaccharide-alditols released by reductive {beta}-elimination from oviducal mucins of Bufo bufo: characterization of the carbohydrate sequence Gal({alpha}1-3)GalNAc({alpha}1-3)[Fuc({alpha}1-2)]Gal

Several tri- to hexasaccharide-alditols of the jelly coat surroundingthe eggs of Bufo bufo were studied by methylation analysis,MALDI-TOF mass spectrometry, and ¹H-NMR spectroscopy. As observedfor six other amphibian species, these carbohydrate chains arehighly species-specific. The main characteristics of the speciesBufo bufo consists in the presence of the new carbohydrate sequenceGal(     

A novel {beta}-galactosidase gene isolated from the bacterium Xanthomonas manihotis exhibits strong homology to several eukaryotic {beta}-galactosidases

The gene encoding a ß-galactosidase from Xanthomonasmanihotis was cloned into Escherichia coli. The gene resideson a 2.4 kb DNA fragment which was isolated from a partial Sau3Alibrary in the cloning vector pUC19 using 5-bromo-4-chloro-3-indolyl-ß-D-galactopyranoside(X-gal) as the selection. The enzyme produced by the clone hasa specificity for ß1-3->ß1-4-linked galactose.The nucleotide sequence of the gene was determined. The deducedprotein sequence contained 597 amino acids yielding a monomericmolecular mass of 66 kDa. The cloned ß-galactosidaseshowed no similarity to any known prokaryotic ß-galactosidase.However, extensive similarity was observed with eukaryotic ß-galactosidasesfrom animals, plants and fungi. The strongest similarity waswith the ß-galactosidases found hi the human and mouselysosomes (42 and 41% identity, respectively). Alignment ofthe X.manihotis and eukaryotic ß-galactosidase sequencesrevealed seven highly conserved domains common to each protein.Additionally, Domain 1 in X.manihotis showed similarity to regionswithin catalytic domains from seven xylanases and cellulasesbelonging to family 10 of glucosyl hydrolases. A region spanningDomain 2 showed similarity to the catalytic domain of endo ß1-3glucanases from tobacco and barley. cellulase ß-galactosidase G_M$$$gangliosidosis Morquio B syndrome Xanthomonas     

Human melanoma and Chinese hamster ovary cells galactosylate n-alkyl-{beta}-glucosides using UDP gal:GlcNAc {beta}1,4 galactosyltransferase

We previously showed that human melanoma, CHO and other cellscan convert ß-xylosides into structural analogs ofganglioside G_M3. We have investigated several potential acceptorsincluding a series of n-alkyl-ß-D-glucosides (n =6–9). All were labeled with ³H-galactose when incubatedwith human melanoma cells. Octyl-ß-D-glucoside (GlcßOctyl)was the best acceptor, whereas neither octyl--D-glucoside norN-octanoyl-methylglucamine (MEGA 8) were labeled. Analysis ofthe products by a combination of chromatographic methods andspecific enzyme digestions showed that the acceptors first receiveda single Galß1,4 residue followed by an 2,3 linkedsialic acid. Synthesis of these products did not affect cellviability, adherence, protein biosynthesis, or incorporationof radio-labeled precursors into glycoprotein, glycolipid orproteoglycans. To determine which ß1,4 galactosyltransferase synthesized Galß1,4GlcßOctyl,we analyzed similar incubations using CHO cells and a mutantCHO line (CHO 761) which lacks GAG-core specific ß1,4galactosyltransferase. The mutant cells showed the same levelof incorporation as the control, eliminating this enzyme asa candidate. Thermal inactivation kinetics using melanoma cellmicrosomes and rat liver Golgi to galactosylate GlcßOctylshowed the same half-life as UDP-Gal:GlcNAc ß1,4 galactosyltransferase,whereas LacCer synthase was inactivated at a much faster rate.We show that GlcßOctyl is a substrate for purifiedbovine milk UDP-Gal:GlcNAc ß1,4 galactosyltransferaseFurthermore, the galactosylation of GlcßOctyl by CHOcell microsomes can be competitively inhibited by GlcNAc orGlcNAcßMU . These results indicate that UDP-Gal:GlcNAcß1,4 galactosyltransferase is the enzyme used forthe synthesis of the alkyl lactosides when cells or rat liverGolgi are incubated with alkyl ß glucosides. alkylglucosides galactosyltransferase glycolipid artificial acceptors     

Estimation of ^{3}J_{HN\hbox{-}H\alpha} and ^{3}J_{H\alpha\hbox{-}H\beta} coupling constants from heteronuclear TOCSY spectra

(3)J proton-proton coupling constants bear information on the intervening dihedral angles. Methods have been developed to derive this information from NMR spectra of proteins. Using series expansion of the time dependent density matrix, and exploiting the simple topology of amino acid spin-systems, formulae for estimation of (3)J(HN-Halpha) and (3)J(Halpha-Hbeta) from HSQC-TOCSY spectra are derived. The results obtained on a protein entailing both alpha-helix and beta-sheet secondary structure elements agree very well with J-coupling constants computed from the X-ray structure. The method compares well with existing methods and requires only 2D spectra which would be typically otherwise recorded for structural studies.     

Monoclonal antibody specific to {alpha}-2->3-linked deaminated neuraminyl {beta}-galactosyl sequence

Fusion of spleen cells from a BALB/c mouse immunized with KDN     

Developmental Variation of the Neurotoxin, {beta}-N-Oxalyl-L-{alpha},{beta}-diamino propionic acid (ODAP), in Lathyrus sativus

Several species of the tribe Viceae (Leguminosae) produce non-proteinamino acids that are toxic to man and animals. The neurotoxinß-N-oxalyl-L-,ß-diamino propionic acid (ODAP)in cultivated Lathyrus sativus causes human neurolathyrism,a neurological disease resulting in the paralysis of lower limbs.Surveys have shown that there are large scale variations betweenspecies of Lathyrus and varieties of L. sativus for the amountof cellular ODAP. In the present investigation, thin-layer chromatographyand chemical analysis were used to study developmental variationin the amount of ODAP in tissues and organs of L. sativus. Theresults confirmed that the rate of synthesis and accumulationof ODAP varied during plant development. Increased rates ofsynthesis were confirmed in young seedlings and in the developingfruits of L. sativus.Copyright 1994, 1999 Academic Press Lathyrus sativus, neurotoxin, ODAP, plant development     

Characterization of a novel mucin sulphotransferase activity synthesizing sulphated O-glycan core 1, 3-sulphate-Gal{beta}1-3GalNAc{alpha}-R

A novel sulphotransferase (sulpho-T) activity from rat colonicmucosa was characterized using O-glycan core 1 substrate, Galß1-3GalNAc     

Transforming growth factor {beta} (TGF-{beta})-Smad target gene protein tyrosine phosphatase receptor type kappa is required for TGF-{beta} function

Transforming growth factor beta (TGF-beta) inhibits proliferation and promotes cell migration. In TGF-beta-treated MCF10A mammary epithelial cells overexpressing HER2 and by chromatin immunoprecipitation, we identified novel Smad targets including protein tyrosine phosphatase receptor type kappa (PTPRK). TGF-beta up-regulated PTPRK mRNA and RPTPkappa (receptor type protein tyrosine phosphatase kappa, the protein product encoded by the PTPRK gene) protein in tumor and nontumor mammary cells; HER2 overexpression down-regulated its expression. RNA interference (RNAi) of PTPRK accelerated cell cycle progression, enhanced response to epidermal growth factor (EGF), and abrogated TGF-beta-mediated antimitogenesis. Endogenous RPTPkappa associated with EGF receptor and HER2, resulting in suppression of basal and ErbB ligand-induced proliferation and receptor phosphorylation. In MCF10A/HER2 cells, TGF-beta enhanced cell motility, FAK phosphorylation, F-actin assembly, and focal adhesion formation and inhibited RhoA activity. These responses were abolished when RPTPkappa was eliminated by RNA interference (RNAi). In cells expressing RPTPkappa RNAi, phosphorylation of Src at Tyr527 was increased and (activating) phosphorylation of Src at Tyr416 was reduced. These data suggest that (i) RPTPkappa positively regulates Src; (ii) HER2 signaling and TGF-beta-induced RPTPkappa converge at Src, providing an adequate input for activation of FAK and increased cell motility and adhesion; and (iii) RPTPkappa is required for both the antiproliferative and the promigratory effects of TGF-beta.