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1.
《Molecular & cellular proteomics : MCP》2019,18(11):2285-2297
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- •BioID with Golgi fractions identified C10orf76 as proximal to GBF1.
- •Tagged C10orf76 overlaps with Golgi markers.
- •C10orf76 binds GBF1 and exchanges rapidly between free and bound forms.
- •C10orf76 is essential for maintenance of the Golgi and for secretion.
2.
《Molecular & cellular proteomics : MCP》2018,17(12):2412-2433
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- •Proteogenomics and secretome comparison of human and zoonotic Staphylococcus aureus lineages.
- •869 secreted proteins identified in eight S. aureus isolates of CC8, CC22 and CC398.
- •CC398 lower secretion of surface proteins and higher secretion of hemolysins and exoenzymes.
- •Regulatory differences in the secretomes could be linked to lower SigB activity in CC398.
3.
《Molecular & cellular proteomics : MCP》2019,18(12):2516-2523
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- •Open source software for comprehensive HDX-MS data analysis.
- •Automatic back-exchange correction options.
- •Rigorous statistical analysis of the significance of uptake differences.
- •High quality visualization tools.
4.
《Molecular & cellular proteomics : MCP》2019,18(5):936-953
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- •In-depth proteome profiling of primary human myeloma cells
- •Characteristics of myeloma cells are related to hypoxic bone marrow conditions
- •Myeloma cells show specific immune evasion strategies
- •Metabolic adaptations involve tumor and stroma cells
5.
《Molecular & cellular proteomics : MCP》2019,18(4):669-685
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- •quantitative phosphoproteome analysis of TDM-activated macrophages.
- •distinct Mincle-dependent and independent phosphorylation and gene regulations.
- •Mincle-dependent activation of PI3K/AKT signaling by TDM.
- •Mincle-independent macrophage response is linked to cell cycle regulation.
6.
《Molecular & cellular proteomics : MCP》2018,17(12):2387-2401
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- •Novel PTMs detected in native yeast exosome, RNA polymerase II and proteasome.
- •MD based approach outperforms published tools in predicting PTMs stability effect.
- •Dynamical approach reveals long range effects of PTMs on subunits binding.
- •Acetylations may have a role in local stabilization of protein complex formation.
7.
《Molecular & cellular proteomics : MCP》2019,18(9):1796-1806
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- •iTRAQ-based analysis of saliva samples from oral cancer patients.
- •Proteome profiling of saliva samples from patients with oral premalignant lesions.
- •Verification of salivary biomarker candidates with MRM-MS and immunoassays.
- •Identification of salivary proteins as potential biomarkers of oral cancer.
8.
《Molecular & cellular proteomics : MCP》2019,18(12):2348-2358
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- •Glycosylation is not currently considered in flu vaccine design.
- •Glycosylation influences on immunodominance are not well understood.
- •Identification of site-specific glycosylation using mass spectrometry has matured.
- •New methods are needed to quantify site-specific glycosylation for vaccine design.
9.
《Molecular & cellular proteomics : MCP》2019,18(5):982-994
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- •MaxQuant.Live controls Orbitrap mass analyzers in real-time.
- •Freely available apps enable advanced data acquisition strategies.
- •On-the-fly mass, retention time and intensity recalibration.
- •Global targeting unifies shotgun and targeted proteomics.
10.
《Molecular & cellular proteomics : MCP》2019,18(2):231-244
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- •OMICS distinguish cancer cells from resistant or cancer stem cells.
- •Bactericidal antibiotics and mitochondria.
- •Linezolid and anticancer therapy.
11.
《Molecular & cellular proteomics : MCP》2018,17(12):2518-2533
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- •Chromobodies are stabilized by antigen binding in live cells.
- •Monitoring changes of endogenous protein levels in living cells with chromobodies.
- •Broadly applicable system to generate turnover-accelerated chromobodies.
- •Quantification of time- and dose-dependent compound effects.
12.
《Molecular & cellular proteomics : MCP》2019,18(11):2298-2309
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- •HLA-B*40:02 and ERAP2 are risk factors for ankylosing spondylitis.
- •The effects of ERAP2 on the B*40:02 peptidome are defined.
- •ERAP2 has a major influence mainly due to alterations of N-terminal residues.
- •These effects provide a basis for the association of ERAP2 with disease.
13.
《Molecular & cellular proteomics : MCP》2019,18(10):2108-2120
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- •Bayesian Beta-Binomial model integrates ion statistics with peptide ratio agreement.
- •Model appropriately interprets information from low signal peptides.
- •Confidence can be assigned even without replicates.
- •Model adds sensitivity to detection of small changes.
14.
《Molecular & cellular proteomics : MCP》2019,18(9):1705-1720
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- •Quantitative changes in global proteome and ubiquitinome in Huntington's disease.
- •Differential ubiquitination of wild-type and mutant Htt in mice brain.
- •Enriched pathways include vesicle transport and mRNA processing.
- •Correlation between protein and diGly site fold changes.
15.
《Molecular & cellular proteomics : MCP》2018,17(12):2496-2507
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- •Quantitative (phospho)proteome analysis of antibiotic treatment in E. coli.
- •Largest bacterial phosphorylation catalogue.
- •Specific phosphorylation motifs changes during resistance development.
- •Phosphorylation mediated signaling could be a potential target for drug design.
16.
《Molecular & cellular proteomics : MCP》2019,18(4):786-795
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- •Quantitative cross-linking mass spectrometry (QCLMS) was automated by Spectronaut.
- •Data-independent acquisition (DIA) was adapted to QCLMS.
- •Accuracy and precision of quantitation improves with DIA over DDA.
- •QCLMS is now ready for use in complex samples.
17.
《Molecular & cellular proteomics : MCP》2019,18(1):51-64
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- •microRNA-222 attenuates TGEV-induced mitochondrial dysfunction.
- •microRNA-222 downregulates THBS1 and CD47.
- •THBS1 is the target of microRNA-222 during TGEV infection.
- •THBS1 and CD47 increase mitochondrial Ca2+ level and reduced mitochondrial membrane potential (MMP).
18.
《Molecular & cellular proteomics : MCP》2019,18(3):477-489
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- •Developed a data processing pipeline to format phosphopeptide identifications.
- •Identified the preferred substrate motif for FLT3 and mutant kinases.
- •Designed and validated a panel of pan-FTL3 artificial substrates.
- •Monitored FLT3 and mutant kinase activity through FAStide phosphorylation.
19.
《Molecular & cellular proteomics : MCP》2019,18(2):383-390
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- •Fast and simple capillary column packing protocol.
- •Low-pressure packing at <100 bars from ultrahigh sorbent suspension concentration.
- •Sorbent particle aggregation leading to blocking of the column entrance is avoided.
- •Effective for long capillary UHPLC column packing with a wide range of sorbents.
20.
Spatiotemporal Changes of the Phagosomal Proteome in Dendritic Cells in Response to LPS Stimulation*
《Molecular & cellular proteomics : MCP》2019,18(5):909-922
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- •Characterization of the phagosomal proteome comparing resting and LPS-treated BMDCs.
- •Label-free quantification determined 2843 phagosomal proteins.
- •Reduced recruitment of hydrolases and V-ATPase to phagosomes of LPS-treated cells.
- •Increased recruitment of antigen cross-presentation molecules to these phagosomes.