Cladistical analysis of primitive G-band sequences for the karyotype of the ancestor of the Cricetidae complex of rodents

Homologous segments identified by G-banding sequences of chromosomes of Peromyscus boylii, Neotoma micropus, Oryzomys capito, (Family Cricetidae) Rattus norvegicus, Melomys burtoni, and Apodemus sylvaticus (Family Muridae) were used to hypothesize a chromosomal condition for the cricetid ancestor. A critical assumption in proposing the primitive G-banding sequences for a given chromosome is that if the outgroup and ingroup taxa have a specific sequence, then the ancestor of the ingroup taxa also had that same sequence. Using this methodology, (chromosome numbers refer to proposed homology to the standardized karyotype for Peromyscus), we propose that: (1) the primitive banding pattern of chromosome 1 was identical to that of Neotoma; (2) the primitive patterns of chromosomes 2, 3, 4, 6, 7, 8, 9, 10, 11, and 12 were primitive banding patterns of 5 and 13 were undetermined; (4) a major portion of the banding patterns of 14 and X were present in the ancestral karyotype. Only the largest 14 autosomes and X were examined because the smaller elements had insufficient G-band definition to ensure reasonable accuracy. The karyotype ancestral to that of Peromyscus, Neotoma, and Oryzomys may be as above and the banding patterns of 5, 13, and 14 were acrocentric and identical to those shown for Peromyscus, Neotoma, and Oryzomys (Fig. 1). In the primitive karyotype, heterochromatin (C-band material) was probably limited to the centromeric regions. If the primitive karyotype is as described above, then it is possible to determine the direction, type, and magnitude of chromosomal evolution evident in the various cricetid lineages. Based on the available data, radiation from the ancestral cytotype is characterized by a nonrandom distribution of types of chromosomal changes. Within many genera, more rearrangements occur in the 14 largest autosomal chromosomes of some congeneric species than distinguish the proposed primitive conditions for the genera Peromyscus, Neotoma, and Oryzomys. It would appear that the extensive morphological radiation from the primitive cricetid ancestor as indicated by the presence of over 100 surviving genera within the family, was not accompanied by extensive karyotypic changes. The magnitude of chromosomal variation that accompanies speciation in these genera appears to range from no detectable chromosomal evolution to a radical reorganization of the genome.     

Karyotypic evolution in Aotus

Great karyotypic diversity exists within the platyrrhine genus Aotus. Primarily by comparing banded karyograms of different forms of Aotus, the pattern of karyotypic evolution can be assessed. Out-group comparisons are used to establish primitive and derived states of particular chromosomes, and a parsimonious cladogram is constructed. Other karyotypic changes are then positioned at appropriate nodes of the cladogram. The resulting phylogenetic hypothesis is entirely self-consistent, is in accord with out-group comparisons, does not invoke hybridization between ancestral forms, and, importantly, indicates a single origin for each rearrangement of euchromatic segments. Moreover, it is consistent with the hypothesis, derived from pelage studies, that the more southerly Aotus taxa constitute a holophyletic group. The reconstructed ancestral karyotype had a diploid number of 54. There has been little loss of euchromatic material during Aotus evolution.     

Karyotype differentiation among members of the immigrans species group of Drosophila

Karyotypes of ten species belonging to four of the five subgroups of the immigrans species group of Drosophila were examined. The group includes species with the most primitive form of karyotype as well as species with so-called recent karyotypic configurations. It is an assemblage of species with karyotypes representing five of the six successive stages involved in the evolution from 2n=12 to 2n=6. Implications of these findings are discussed.     

Phylogenetic implications of karyotypic variation in the Batagurinae (Testudines: Emydidae)

The present study examined karyotypes of 16 genera and, along with previous reports, chromosomal data are now available for 18 of the 23 recognized batagurine genera. There are no karyotypic data available for the members of McDowell's (1964) Hardella complex. The Batagur, Heosemys and Geoemyda complexes retain the hypothesized primitive karyotype for the subfamily (2n=52). All the genera in these three complexes have been examined except Batagur and Annamemys. The Orlitia complex is karyotypically distinct with 2n=50 and the NOR located terminally on a large microchromosome. The genus Malayemys inclusion in the Batagur complex is not supported. Malayemys is characterized by a 2n=50 karyotype, with the NOR located interstitially on a large microchromosome. The Malayemys complex is erected to contain this genus at a point intermediate between the Orlitia complex and the subfamily Emydinae. Malayemys and the emydines are karyotypically indistinguishable. The Neotropical genus Rhinoclemmys (Geoemyda complex) differs only slightly from the primitive batagurine karyotype in the position of the NOR. The species R. funerea and R. punctularia further differ in possessing one less metacentric macrochomosome. An interesting situation involves two subspecies of R. punctularia. The nominate subspecies is characterized by a 2n=56 karyotype, while R. p. melanosterna reportedly has a 2n=52 karyotype. Such a difference is interpreted as indicative of genetic differentiation between the two forms of a magnitude inconsistent with considering them as conspecific. Taken together with zoogeographic considerations, the karyotypic difference between the forms R. p. punctularia and R. p. melanosterna seem sufficient to warrant species distinction for R. melanosterna as previously suggested by Pritchard (1979b).     

Chromosome banding and phylogenetics of the golden mouse,Ochrotomys nuttalli

The number and location of nucleolus organizer regions, and G- and C-band karyotypes of Ochrotomys nuttalli were compared with those of other seemingly closely related New World peromyscine rodents. Although Ochrotomys was once considered a subgenus of Peromyscus, it shares few apparent G-band homologies with any peromyscine. The presumed homologous karyotypic elements shared between Ochrotomys and other peromyscine genera also are shared with Neotoma (the probable sister group of peromyscines) and these elements are hypothesized to be primitive for the group. The largest autosome in Ochrotomys appears to be shared with a distantly related species, Sigmodon hispidus, and this chromosome might be represented as two acrocentric autosomes (tandem fission products) in peromyscines and Neotoma. If this hypothesis is correct, the peromyscines as currently recognized likely are polyphyletic. The unusually extensive rearrangement of the Ochrotomys karyotype relative to peromyscines appears to represent a case of karyotypic megaevolution.     

Redescription of the karyotype of five species of the family Bufonidae (Amphibia: Anura) from central area of Argentina

In this study karyotypic features of the five species of the family Bufonidae from the central area of Argentina are described. The species are Rhinella achalensis, Rhinella arenarum, Rhinella fernandezae, Rhinella schneideri and Melanophryniscus stelzneri. The metaphases were obtained from intestinal and testis cells, using conventional techniques. Twenty metaphasic figures per individual were analyzed and the total length of each chromosome and the length of the four arms were measured. The obtained measurements were processed using Excel 2000 to obtain the average length of the arms p and q, the arm ratio, the centromeric index, the relative chromosome length and the relative arm length. All species showed karyotype 2n = 22, and karyotype formula of 6: 5. Pairs one to six were large, with a relative chromosome length between 18.64–7.59%; pairs seven to eleven were small, with a relative chromosome length between 7.18–2.42%. In all species the chromosome morphology was metacentric or submetacentric. Karyotype and ideograms were made for all species, based on morphometric parameters of the chromosome complement. Finally, discriminant analysis was used to separate the five species analyzed, with a highly significant classification rate of 80% and P < 0.0001. These results agree, in general, with those presented by other authors, however, in M. stelzneri detailed karyological studied have not been made so far, thus this work represents a significant contribution to the karyotypic decryption features of this species and the Rhinellla species from central area of Argentina.     

A simple parameter of dispersion index that serves as an adjunct to karyotype asymmetry

In order to refine the measure of karyotype asymmetry a new chromosomal parameter of dispersion index is proposed that has the potential to decipher even the minor karyotypic variations, thus permitting further evolutionary gradations to the karyotype asymmetry classes of Stebbins. The higher the dispersion index, the more specialized would be the karyotype. The dispersion index takes into account the variance lor gradual change in chromosome size within a complementvis-a-vis variance for the position of centromere in a karyotypic totality. The dispersion index is calculated as the proportionate measure of centromeric gradient to the coefficient of variation for chromosome length; wherin centromeric gradient = length of median short arm — length of median chromosome. Thus, the three most important karyotypic criteriaviz., differences in: absolute chromosome size, position of centromere and relative chromosome size, are all covered in the proposed parameter. The effectiveness of dispersion index has been tested on a plant taxa,Papaver L., where karyomorphological details, nuclear DNA content, and morphotaxonomic parameters have been amply elucidated from an evolutionary stand point. It is hoped that dispersion index would find immense utility in delimiting species interrelationships particularly in the closely related taxa, when applied in conjunction with other systematic parameters.     

Karyotype analysis of regenerated plants from callus cultures of interspecific hybrids of cultivated barley (Hordeum vulgare L.)

Summary The karyotype of 82 regenerated plants from callus cultures of interspecific hybrids between cultivated barley (Hordeum vulgare L.) and seven polyploid wild barley species was examined by C-banding or Feulgen staining. The karyotypic changes observed in 46 plants included aneuploidy, double haploidy, amphidiploidy, deletions, inversions, extra C-bands, and extra euchromatic segments. Apparently, chromosome 5, 6, and 7 of H. vulgare were more frequently exposed to elimination or structural change than the other chromosomes of this species. Irradiation of calli seemed to enhance the occurrence of karyotypic variants.     

Cytogenetics of the genus Arvicanthis (Rodentia,Muridae). 3. Comparative cytogenetics of A. neumanni and A. nairobae from Tanzania

The African rats of the genus Arvicanthis have been widely studied during recent years to clarify species boundaries and phylogenetic relationships. The wide chromosomal variability of the genus has been highlighted in several studies, with each accepted species characterised by its individual karyotypes and others being revealed as cryptic species. In the present paper we report the karyotype and the C- and G-banding patterns of the two species A. nairobae and A. neumanni from seven localities of Tanzania, an area of the range poorly studied. The two karyotypes were compared to that of A. niloticus, which is considered to be primitive. The karyotype of A. neumanni is characterised by 2n = 53–54 and NFa = 62. This karyotypic variability depends on a widespread Robertsonian polymorphism. The karyotype of A. nairobae shows 2n = 62 and NFa = 78; it diverges from that of A. niloticus through one reciprocal translocation, five inversions and three heterochromatic additions. The comparison with the karyotypes of other species of the genus showed that A. neumanni belongs to the east African lineage (with A. abyssinicus, A. blicki, A. niloticus), while A. nairobae is closer to the central and the west African representatives which were all previously under the name of A. niloticus (ANI-2, ANI-3, ANI-4). The distribution of A. nairobae in east Africa opens new scenarios in the biogeographical pattern of evolution of the genus.     

Genome size evolution in Sapindaceae at subfamily level: a case study of independence in relation to karyological and palynological traits

Sapindaceae s.l. is a moderately large family of trees, shrubs and lianas. Current knowledge on genome size and how it varies in this family is scarce. This research aims to characterize the DNA content in 39 species of Sapindaceae, mainly in tribe Paullinieae s.s., by the analysis of the variation in genome size relative to karyotypic and palynological features. Nuclear DNA amount was measured by flow cytometry, and linear regression analyses were conducted to analyse the relationship between genome size variation and various karyotypic and palynological features. Genome size varied nine‐fold among species, ranging from 1C = 0.305 pg (Lophostigma plumosum) to 2.710 pg (Cardiospermum heringeri). The low regression coefficients obtained suggest that genome size mainly varies independently of karyotypic and palynological features. With regard to karyotype evolution, the constant chromosome number but variable genome size in Houssayanthus, Paullinia and Serjania suggest that structural changes mainly caused by changes in the amounts of repetitive DNA are more important than numerical change. In contrast, in Cardiospermum and Urvillea, variation in chromosome number and genome size supports the suggestion that numerical and structural changes are important in the karyotype evolution of these genera. © 2014 The Linnean Society of London, Botanical Journal of the Linnean Society, 2014, 174 , 589–600.     

角堇与大花三色堇染色体核型分析

以2份角堇与4份大花三色堇自交系为试验材料,采用染色体常规压片方法,观察和分析了它们的细胞染色体数目、相对长度、平均臂比等核型指标,以明确两种植物细胞学特点,为分类以及育种提供理论依据。结果表明:(1)2份角堇自交系染色体数目均为2n=2x=26,染色体基数为x=13,染色体核型公式分别为2n=2x=26=8m+12sm+6st、2n=2x=26=4m+16sm+6st,核型不对称系数为67.20%~70.10%,核型分类均属于3B。(2)4份大花三色堇自交系均为四倍体,其中2份(EYO-1-2-1-4、DSRFY-1-1-2)染色体数目为44,核型公式为2n=4x=44=4m+16sm+6st、2n=4x=44=16m+24sm+4st;2份(G10-1-3-1-4、XXL-YB-1-1-1-1)染色体数目为48,核型公式分别为2n=4x=48=8m+20sm+20st、2n=4x=48=4m+36sm+8st,核型不对称系数为66.74%~71.77%,核型分类属于2B、3B。     

Karyotypic evolution in an originally XY cell line of Drosophila melanogaster

The cell line Ca of Drosophila melanogaster, characterized initially by a nearly diploid and normal male karyotype (XY), was used to study chromosomal variation over a period of 5 years of cultivation in vitro. Some general aspects of cell population dynamics which are in accordance with previous findings are pointed out. Various phenomena regarding chromosomal changes leading to karyotype polymorphism are outlined, with a particular emphasis being given to the sex chromosomes. Accordingly, with the aid of fluorescence analysis, some features of the Y and the X chromosomes providing evidence of an enlargement of the heterochromatin (due to addition and to saltatory replication) are described. Moreover, a case of variation in cell morphology accompanied by karyotypic changes was observed, as well as the emergence of a new cell subline of XX type derived from the original of XY type.     

KARYOTYPIC VARIATION OF EASTERN NORTH AMERICAN CLAYTONIA CHEMICAL RACES

Considerable karyotypic differentiation has occurred within the group of taxa comprising the eastern North American members of the genus Claytonia. Patterns of karyotypic differentiation are congruent with evolutionary groupings based on flavonoid chemistry, particularly at the diploid level. The 2n = 16 diploid chemotype found in both C. caroliniana and C. virginica possesses a karyotype composed entirely of metacentric chromosomes, while acrocentric chromosomes predominate in the karyotypes of the 2n = 12 and 2n = 14 diploid chemotypes of C. virginica. The 2n = 16 diploid also has a karyotype significantly larger than those of the other diploid cytotypes. Polyploid karyotypes of both species show varying degrees of divergence from their presumed diploid progenitors.     

THE CYTO-ECOLOGY OF FOUR SPECIES OF TRILLIUM FROM WESTERN NORTH CAROLINA

The major center of variability in the genus Trillium occurs in the southern Appalachian mountains of the eastern United States. The karyotypic variation existing within T. cuneatum Raf., T. grandiflorum (Michx.) Salisb., T. erectum L., and T. gleasoni Fern., the four most abundant Trillium species in western North Carolina, was analyzed and compared with the variation in gross morphology and the ecological associations of the respective species. The number of types of each kind of chromosome (A-E), as exhibited following “nucleic acid starvation” by cold treatment, varied widely from species to species. Chromosome types varied within each species and within populations in the numbers, sizes, and positions of euchromatic and heterochromatic segments. No 10-chromosome karyotype and only one 5-chromosome complement was found to be duplicated in any two plants which belonged to different species. Trillium cuneatum with eight chromosome types was morphologically stable and occurred in a limited geographic area. Trillium gleasoni, characteristically adapted to elevations near 2,000 feet, contained 32 chromosome types and exhibited a high morphological variability. Trillium erectum (25 types) and T. grandiflorum (23 types) were also intermediate in morphological variability. These two species had the widest geographical range. Karyotypes were analyzed from pure stands of each of the four species and for each species from mixed stands of two or more of the species growing in close association. These Trillium species are maintaining a high level of karyotypic and gross morphological variability within comparatively limited geographical areas. None of the observed karyotypes in any species is likely to have arisen by recent interspecific hybridization. The composite karyotype of each species could be used as an aid to classification in the genus Trillium.     

Chromosome numbers and karyotypes within the Ranunculus alpestris-group (Ranunculaceae)

The Ranunculus alpestris-group comprises six white-flowered species growing in mostly alpine zones of central and southern European mountains. They all are diploid with 2n=16 chromosomes. The common karyotype of the group was established based on 75 metaphases (6–26 metaphases per species). The haploid karyotype consists of four metacentric (chromosomes 1, 3, 6, 7) and four more or less subtelocentric chromosomes (2, 4, 5, 8). This karyotype is similar to that of other white-flowered European Ranunculus species as well as the yellow-flowered R. thora-group. Analysis of karyotypes partly confirms relationships inferred from molecular phylogenies. Species with this karyotype are placed on rather basal branches in existing phylogenies, which may indicate that this karyotype is primitive within the genus Ranunculus.     

Karyotype analysis in three species of the genus Chirostoma (Atheriniformes: Atherinidae)

Karyotype analyses of three Chirostoma species, C. estor, C. patzcuaro, and C. jordani from Mexico, are presented. C. estor and C. jordani have both a diploid number of 2N = 48 and a fundamental number of NF = 68, but different karyotype formulae. The co-occurrence of these karyotypes with morphometric and allozymatic primitive features so far reported suggests that the ancestral karyotype of the genus Chirostoma was similar to the one shown by these species. The divergent karyotype of C. patzcuaro (2N = 44 and NF = 44) could be related to its endemism and to the relatively small size of its populations. Received: February 7, 2001 / Revised: September 7, 2001 / Accepted: October 11, 2001     

Karyotypic differences and evolutionary tendencies of some species from the subgenusObliquodesmus Mlad. of genusScenedesmus Meyen (Chlorophyta, Chlorococcales)

Karyotype structures ofScenedesmus acuminatus (Lagerch.) Chod. andScenedesmus pectinatus Meyen are compared. The karyotype ofS. acuminatus (n = 5) is described for the first time. It reveals four large metacentric and one large submetacentric chromosomes (4M + 1SM). The established karyotype differences have been helpful in clarifying the taxonomic position of these two species. The cytological analyses of other related clonal cultures suggest an evolutionary transition fromS. pectinatus towardsS. regularis throughS. pectinatus f.regularis, which correlates with the morphological data about their variability. These results are discussed from the cytogenetic, morphological and evolutionary point of view. On the basis of the karyotypic analysis, it was confirmed that from a taxonomic point of viewS. pectinatus, S. acuminatus andS. regularis are separate biological species.     

Comparative karyological studies on the species of Eubothrium Nybelin, 1922 (Cestoda: Pseudophyllidea)

Karyotypes of Eubothrium salvelini, E. crassum and Eubothrium sp. were studied using conventional Giemsa staining and comparative karyometric analysis. The karyotypes, reported here for the first time, consist of eight chromosome pairs. The two first pairs of homologues are metacentric and markedly larger than the remaining elements. The obvious similarity in karyotype structure does not exclude the possibility of discriminating E. salvelini and E. crassum using karyotypic characters. The best cytogenetic marker is the last pair of chromosomes, which is acrocentric in the karyotype of E. salvelini and metacentric in that ofE. crassum. Karyological observations provide strong evidence for assigning Eubothrium sp. from Clupea harengus membras to E. crassum. Comments are made on the karyotypes of these and related species with respect to their phylogenetic links.     

Chromosomes of Trachypachus Motschulsky and the evolution of the ancestral adephagan karyotype (Coleoptera)

The family Trachypachidae is a critical group for understanding the evolution of the coleopteran suborder Adephaga. In this article, we report the first karyotypic data on Trachypachus showing a diploid number of 2n = 36 + X (meioformula n = 18 + X) and a single autosomal localization of the rDNA clusters. The evolutionary dynamics of this karyotype are discussed in the light of recent phylogenetic hypotheses of the order Coleoptera. We conclude that chromosome analysis supports a close relationship between trachypachids and the other Geadephaga and that a male karyotype with 36 + X chromosomes may well be considered ancestral for the whole suborder Adephaga.