Evaluation of CRE-mediated excision approaches in <Emphasis Type="Italic">Arabidopsis thaliana</Emphasis>

The ability of the CRE recombinase to catalyze excision of a DNA fragment flanked by directly repeated lox sites has been exploited to modify gene expression and proved to function well in particular case studies. However, very often variability in CRE expression and differences in efficiency of CRE-mediated recombination are observed. Here, various approaches were investigated to reproducibly obtain optimal CRE activity. CRE recombination was analyzed either by transforming the CRE T-DNA into plants containing a lox-flanked fragment or by transforming a T-DNA harboring a lox-flanked fragment into plants producing the CRE recombinase. Although somatic CRE-mediated excision of a lox-flanked fragment was obtained in all transformants, a variable amount of germline-transmitted deletions was found among different independent transformants, irrespective of the orientation of transformation. Also, the efficiency of CRE-mediated excision correlated well with the CRE mRNA level. In addition, CRE-mediated fragment excision was compared after floral dip and after root tissue transformation when transforming in a CRE-expressing background. Importantly, less CRE activity was needed to excise the lox-flanked fragment from the transferred T-DNA after root tissue transformation than after floral dip transformation. We hypothesize that this is correlated with the lower T-DNA copy number inserted during root transformation as compared to floral dip transformation. Gordana Marjanac and Annelies De Paepe contributed equally to this work.     

Oxidation and reduction of plastoquinone by photosynthetic and respiratory electron transport in a cyanobacterium Synechococcus sp.

The I-D dip, an early transient of the fluorescence induction, was examined as a means to monitor redox changes of plastoquinone in cells of a cyanobacterium, Synechococcus sp. That the occurrence of the dip depends upon the reduced state of the plastoquinone pool was indicated by observations that 2,5-dibromo-3-methyl-6-isopropyl-p-benzoquinone and 3-(3,4-dichlorophenyl)-1,1-dimethylurea did not affect the initial rise to I but abolished the subsequent decline from I to D and that illumination of the cells with light 1, prior to fluorescence measurements, eliminated the transient. The I-D dip was prominent in freshly harvested cells containing abundant endogenous substrates, disappeared slowly as the cells were starved by aeration but reappeared on addition of fructose to the starved cells in the dark. The dip that had been induced by a brief illumination of the starved cells with light 2 was rapidly diminished in the dark and KCN inhibited the dark decay of the transient. The results indicate that plastoquinone is reduced with endogenous as well as exogenous substrates and oxidized by a KCN-sensitive oxidase in the dark, thus providing strong support for the view that plastoquinone of photosynthetic electron transport also functions in respiration. In addition, the occurrence of a cyclic pathway of electrons from Photosystem I to plastoquinone, possibly via ferredoxin or NADP, was suggested. Several lines of evidence indicate that, under a strong light 2, Photosystem I-dependent oxidation of plastoquinone predominates over Photosystem II-dependent reduction of the quinone in the cyanobacterium which contains Photosystem I more abundantly than Photosystem II.     

A new microfungal isolate, Embellisia sp., associated with the Antarctic moss Bryum argenteum

A microfungal isolate of Embellisia sp. (Simmons), assigned Embellisia sp2, not previously described from the Antarctic, has been identified by morphological means and internal transcribed spacer (ITS) region sequencing. Embellisia sp2 was shown to be associated with the bryophyte Bryum argenteum, collected from Marble Point in Southern Victoria Land, Antarctica, and grew only in samples plated from crushed moss tissue and surface-sterilized leafy stems. Two other types of microfungi, Penicillium sp. and Trichoderma sp., were cultivated from a surface rinse of the moss. Accepted: 6 May 2000     

Utilization of noxious weeds for the management of plant-parasitic nematodes infesting some vegetable crops: Einsatz von schädlichen unkräutern zur bekämpfung von pflanzenparasitären nematoden auf verschiedenen gëmusekulturen

Significant reduction was observed in the population of plant-parasitic nematodes, Meloidogyne incognita, Rotylenchulus reniformis and Tylenchorhynchus brassicae infesting eggplant and cauliflower when given root-dip treatment in the leaf extracts of Argemone maxicana and Solanum xanthocarpum at different concentrations and dip durations. The root-knot development and larval penetration of second stage juveniles of M. incognita were also inhibited, may be due to bare-root dip treatment in leaf extracts of both the weed plants. Leaf extracts of S. xanthocarpum caused more inhibition in root-knot development, nematode multiplication of reniform and stunt nematodes than that of A. maxicana. Plant growth improvement was noted which seems to be due to dip treatment and reduction in the population of parasitic nematodes. The efficacy of root-dip treatment with respect to improvement in plant growth of eggplant and cauliflower and reduction in root-knot development and nematode population, increased with increasing the concentration of leaf extracts and dip durations.     

Relationship between susceptibility to neonicotinoids and population dynamics of cotton aphid,Aphis gossypii Glover (Hemiptera: Aphididae)

Efficiency of imidacloprid and thiametoxam on population growth parameters of Aphis gossypii Glover (Hemiptera: Aphididae) was assessed using three bioassay methods including; residual, starvation and FAO dip methods. Aphids were assayed under laboratory conditions at 23 ± 2°C, photoperiod of 16:8 (L:D) and 70% relative humidity. Aphids were transferred to sprayed leaves and Petri dishes in residual and starvation methods, respectively. There was no feeding for the aphids in starvation method. In FAO dip method, insects were dipped for 5 s in pesticide solutions and then transferred to fresh leaves. Results revealed that LC₅₀ values calculated with the starvation and residual methods were respectively 15 and 11% more than FAO dip method (for imidacloprid) and 22 and 18% (for thiametoxam). The LC₅₀ value in starvation method was 3% more than the residual method. Calculated LC₅₀ in starvation and residual methods with imidacloprid respectively caused 160 and 34% increase in intrinsic rates of increase (r _m) and net reproductive rate (R ₀) in comparison with FAO dip method. Generation time (T) and doubling time (DT) were respectively 59 and 62% less than those in FAO dip method. In contrast, thiametoxam (LC₅₀ concentration) in starvation and residual method lead to 9 and 67% increase in r _m and R ₀ parameters compared to FAO dip method. However T and DT were respectively 65 and 92% less than mentioned parameters in FAO dip method. There was not any significant difference between life table parameters calculated by residual and starvation bioassay methods.     

Floral Spray Transformation Can Efficiently Generate Arabidopsis

In this study, floral spray and floral dip were used to replace the vacuum step in the Agrobacterium-mediated transformation of a superoxide dismutase (SOD) gene into Arabidopsis. The transgene was constructed by using a CaMV 35S promoter to drive a rice cytosolic CuZnSOD coding sequence in Arabidopsis. The transgene construct was developed in binary vectors and mobilized into Agrobacterium. When Arabidopsis plants started to initiate flower buds, the primary inflorescence shoots were removed and then transformed by floral spray or floral dip. More than 300 transgenic plants were generated to assess the feasibility of floral spray used in the in planta transformation. The result indicates that the floral spray method of Agrobacterium can achieve rates of in planta transformation comparable to the vacuum-infiltration and floral dip methods. The floral spray method opens up the possibility of in planta transformation of plant species which are too large for dipping or vacuum infiltration.     

Opiate Receptor: Multiple Effects of Metal Ions

Abstract: The opiate antagonist [³H]diprenorphine ([³H]dip), a universal ligand at the μ, δ, and k opiate receptor subtypes, was used to study the effects of Ca-II, Cu-II, Mg-II, Mn-II, and Na⁺ on the rat cerebral opiate receptor. Two categories of effects were observed: (a) those on the binding rate constants and (b) those on binding capacity. (a) Sodium ions increased on- and off-rates on [³H]dip with a rather small net change in receptor affinity. The effects of Na⁺ and the divalent ions Ca-II, Mg-II, and Mn-II were antagonistic to each other. Ca-II, Mg-II, and the more effective Mn-II decreased receptor association and dissociation rates, again with minimal changes in the overall binding affinity in washed membrane homogenates. Previous studies using equilibrium binding analysis alone failed to detect changes in [³H]dip binding kinetics caused by these metal ions. In untreated rat brain homogenates, however, Ca-II (and to a lesser extent Mg-II) decreased [³H]dip binding, an effect distinct from that on the binding rate constants in washed membrane homogenates. (b) In untreated, Tris-buffer homogenates not containing external metal ions, a gradual decline in [³H]dip binding was observed. Cu-II or an equivalent endogenous divalent metal ion was identified as a causative factor, and Mn-II partially reversed this effect. Moreover, the addition of Mn-II stabilized the [³H]dip binding sites at very low concentrations of the metal (nM to μM range) that did not change the binding rate constants and that were in the physiological range of Mn-II in rat brain. This unique effect of Mn-II may represent a physiological function in the regulation of the opiate receptor that is not shared by Mg-II and Ca-II. The opposite effects of Cu-II and Mn-II on the in vitro receptor stability may be related to their opposite pharmacological effect in vivo. Finally, multiple changes of the effects of the tested metal ions on [³H]dip binding were observed during in vitro membrane homogenate dilution, centrifugation, and washing. These changes indicate that the opiate receptor complex as it exists in vivo may lose some of its functions and control mechanisms in vitro.     

Gene tree parsimony vs uninode coding for phylogenetic reconstruction

have suggested that there are important weaknesses of gene tree parsimony in reconstructing phylogeny in the face of gene duplication, weaknesses that are addressed by method of uninode coding. Here, we discuss Simmons and Freudenstein's criticisms and suggest a number of reasons why gene tree parsimony is preferable to uninode coding. During this discussion we introduce a number of recent developments of gene tree parsimony methods overlooked by Simmons and Freudenstein. Finally, we present a re-analysis of data from that produces a more reasonable phylogeny than that found by Simmons and Freudenstein, suggesting that gene tree parsimony outperforms uninode coding, at least on these data.     

Method of modelling intracellular transport in branching neurites: application to axons and dendrites of Drosophila sensory neurons

This paper develops a method of calculating the transport of intracellular organelles in neurons with branching neurites which is based on the Smith–Simmons equations of motor-assisted transport. The method is aimed at understanding the effects of microtubule (MT) polarity orientation in branching neurites on transport of organelles at the fundamental level. The method is applied to calculating the organelle transport in axons and dendrites of Drosophila neurons, using the map of MT orientation in such neurons developed by Stone et al. (Mol Biol Cell 19:4122–4129, 2008). The proximal dendrite is assumed to branch and form two distal dendrites. Two different MT polarity arrangements in a proximal dendrite are considered, and implications of these MT arrangements on organelle transport are analysed. It is demonstrated that the MT arrangement found in Drosophila dendrites (MTs have their minus ends out in a proximal dendrite) results in much more efficient motor-driven transport than the structure with a mixed MT orientation in proximal dendrites.     

Evaluation of Bacillus subtilis (JN032305) biofungicide to control chilli anthracnose in pot controlled conditions

Colletotrichum gloeosporioides (Penz.) causing anthracnose is a potent pathogen of chilli resulting in significant yield loss. The in vitro root colonisation study showed an increase in root bacterial count by 10 × 10⁵ colony forming units/cm root for Bacillus subtilis after 15 days of germination. Population level of the antagonist was stable in talc till the 180th day (30°C – 1.6 × 10⁸; 4°C – 1.9 × 10⁸) and in lignite till the 150th day (30°C – 1.5 × 10⁸; 4°C – 1.3 × 10⁸). Combined application of B. subtilis and carbendazim enhanced all biometric parameters with reduction in disease incidence. Soil, seed, root dip and foliar spray treatment significantly enhanced the growth parameters of chilli in B. subtilis inoculated treatments in comparison to the untreated control. Seed application resulted in highest plant fresh weight (76.84 g) and dry weight (34.17 g) compared to the untreated control (50 g and 21 g fresh and dry weight, respectively). Highest plant height ranging from 70 cm (soil application) to 77 cm (dip treatment) with Bacillus inoculation was comparable with carbendazim treatment (61 cm with soil application) and 78 cm (dip treatment) and significantly higher than the untreated control (58.2 cm with soil and 61 cm with application, respectively). Dip treatment resulted in significant increase in root length with B. subtilis (33 cm) and carbendazim (32.5 cm) in comparison to untreated control (15 cm). Co-inoculation of pathogen with B. subtilis (singly and with carbendazim) not only reduced the disease incidence but also improved all the biometric parameters in comparison to challenge inoculation. Root dip application was effective in promoting growth while seed application was effective in disease control.     

Possible utilization of weeds for the management of plant parasitic nematodes infesting some vegetable crops

Leaf extracts of noxious weeds such as Solanum xanthocarpum and Argemone maxicana were used as bare-root dip treatment for the management of three important plant-parasitic nematodes, Meloidogyne incognita, Rotylenchulus reniformis and Tylenchorhynchus brassicae infesting tomato (Lycopersicon esculantum ) and chilli (Capsicum annuum) plants. Significant reduction was observed in the root-knot development caused by M. incognita, multiplication of nematode populations of R. reniformis and T. brassicae on both the test plants. Larval penetration of second stage juveniles of M. incognita was also inhibited at various concentrations of leaf extracts and dip durations. Leaf extract of S. xanthocarpum caused relatively more inhibition in root-knot development in case of root-knot nematode, nematode multiplication of reniform and stunt nematodes than that of A. maxicana. Because of dip treatment in leaf extracts of Argemone maxicana and Solanum xanthocarpum, the plants show better growth and at the same time the populations of nematodes such as M. incognita, R. reniformis and T. brassicae significantly decreased, which naturally improved plant growth. The efficacy of root-dip treatment with respect to improvement in plant weight and reduction in root-knot development and nematode populations, increased with increasing the concentration of leaf extracts and dip durations.     

Plant–plant–plant communications,mediated by (E)-β-ocimene emitted from transgenic tobacco plants,prime indirect defense responses of lima beans

Some volatile organic chemicals (VOCs), such as terpenes, are responsible for communication between plants. We assessed the priming of defense responses in lima bean by exposing the plants to transgenic-plant-volatiles [(E)-β-ocimene] emitted from transgenic tobacco plants (NtOS2). As it was previously shown that the first receiver lima bean plants, which were infested with spider mites after having been exposed to (E)-β-ocimene from NtOS2, were highly induced to emit VOCs, we analyzed the VOCs emitted from a second set of receiver plants (second receiver plants) exposed to the infested, first receiver plants. In response to feeding by spider mites, two homoterpenes [(E)-4,8-dimethyl-1,3,7-nonatriene and (E,E)-4,8,12-trimethyltrideca-1,3,7,11-tetraene] were more highly emitted from the second receiver plants in response to spider mite attack, in comparison to the levels emitted from plants that had been placed near infested, wild-type (WT)-volatile-exposed plants. These data suggest that transgenic-plant-volatile-mediated, multiple-plant communication can function in plant defenses.     

Response of chrysanthemum to uniconazole and daminozide applied as dip to cuttings or as foliar spray

Uniconazole and daminozide were used as dip on unrooted cuttings or as foliar spray on pinched Dendranthema grandiflora Tzvelev. Dalvina to control height. Stem elongation was determined on cuttings dipped in solutions of 0, 1.25, 2.5, 5, or 10 mg/L uniconazole or cuttings were dipped and later treated with foliar sprays in concentrations of 1.25/5, 1.25/10, 2.5/10, and 5/5 mg/L uniconazole, respectively. Other plants were sprayed once or twice with uniconazole at 10 mg/L. Daminozide treatments included a pre-plant dip/foliar spray application of 1000/2000 mg/L, respectively, or two foliar sprays of 2,000 mg/L. Uniconazole dip alone retarded stem elongation linearly up to 8 weeks after propagation, 5 weeks after pinching, but was not discernible from the control treatment 8 weeks after pinching. Uniconazole at 2.5/10 and 5/5 mg/L as a dip/spray combination resulted in plants 33% shorter than the control at the end of the production. Doubling uniconazole dip or spray treatments from 5 to 10 mg/L provided no additional reduction of stem elongation. The single uniconazole spray and both daminozide treatments had no effect on final height, although daminozide treatments reduced stem dry weight compared to the control. Stem dry weight was reduced by uniconazole dip/spray combinations compared to dip treatments alone. Similarly, inflorescence and root dry weights were also reduced by the highest uniconazole concentrations. Higher concentrations of uniconazole reduced transpiration on a per leaf area basis up to 47% compared to the control at the end of production. In contrast to previous work, leaf area and leaf thickness increased with some uniconazole treatments, while time to anthesis was not affected by any of the treatments.     

Lethal and behavioral sublethal side effects of thiamethoxam on the predator Harmonia axyridis

Thiamethoxam (TMX) is one of the most effective neonicotinoid insecticides for the control of green peach aphid, Myzus persicae (Sulzer) (Hemiptera: Aphididae), and various side effects can be expected in its natural enemies. The multicolored Asian lady beetle or harlequin ladybird, Harmonia axyridis (Pallas) (Coleoptera: Coccinellidae), is an important predator against M. persicae in greenhouses and fields. In this study, we evaluated the toxicity of TMX to H. axyridis and the effect on the functional response of this predator to M. persicae through three routes of exposure. Acute toxicity bioassays indicated that LC₅₀ values of TMX on H. axyridis through direct residual contact (‘contact’), systemic application (‘systemic’), and leaf‐dip treatment (‘leaf‐dip’) were 18.99, 21.26, and 15.39 mg a.i. l^?1, respectively. The hazard quotient indicated a potential hazard of this agrochemical regardless of the exposure routes. The mortality caused by the lowest rate, 2 mg a.i. l^?1, was not significantly different compared with the control group. For the three routes of sublethal TMX exposure, the type‐II functional response was a good fit to the prey consumption of H. axyridis. Predation was most affected by leaf‐dip treatment, followed by contact and systemic treatments, which had similar effect. For all exposure routes, the predation capacity of the predator recovered quickly after transfer to untreated cabbage leaves. Thiamethoxam applied systemically was the least toxic to H. axyridis and did not affect the functional response of the predator. However, the sublethal effects of TMX through both contact and leaf‐dip application may reduce the population growth of H. axyridis and consequently impair the biological control of M. persicae by this predator. These results illustrate that the assessment of potential effects of TMX on H. axyridis is crucial to develop effective integrated pest management programs for M. persicae in China.     

Molecular Evolution of the Transferrin Receptor/Glutamate Carboxypeptidase II Family

The transferrin receptor family is represented by at least seven different homologous proteins in primates. Transferrin receptor (TfR1) is a type II membrane glycoprotein that, as a cell surface homodimer, binds iron-loaded transferrin as part of the process of iron transfer and uptake. Other family members include transferrin receptor 2 (TfR2), glutamate carboxypeptidase II (GCP2 or PSMA), N-acetylated α-linked acidic dipeptidase-like protein (NLDL), N-acetylated α-linked acidic dipeptidase 2 (NAALAD2), and prostate-specific membrane antigen-like protein (PMSAL/GCPIII). We compared 86 different sequences from 24 different species, from mammals to fungi. Through this comparison, we have identified several highly conserved residues specific to each family not previously associated with clinical mutations. The evolutionary history of the TfR/GCP2 family shows repeated episodes of duplications consistent with recent theories that nondispensable, slowly evolving genes are more likely to form multiple gene families. [Reviewing Editor: Dr. Gail Simmons]     

Reduced glutathione promotes callus growth and shoot development in a shoot tip culture of apple root stock M26

Reduced glutathione (GSH) was applied to prevent browning in shoot tip explants of apple (Malus pumila Mill.). Development was compared between shoot tips treated either by (a) dipping into 0.1 mm GSH solution prior to culture (dip treatment), (b) dipping into the GSH solution and transferring to a medium containing 0.1 mm GSH (dip-and-add treatment), or (c) without dipping or culturing with GSH (control). In the dip treatment, 100% of shoot tips developed into normal shoots after 120 days, while the results with the dip-and-add treatment and control were 50 and 40%, respectively. The results show that application of antioxidant GSH in the initial phase of culture promoted the normal development of shoot tips. Received: 10 October 1997 / Revision received: 12 January 1998 / Accepted: 24 January 1998     

The dimeric form of the unphosphorylated response regulator BaeR

Bacterial response regulators (RRs) can regulate the expression of genes that confer antibiotic resistance; they contain a receiver and an effector domain and their ability to bind DNA is based on the dimerization state. This is triggered by phosphorylation of the receiver domain by a kinase. However, even in the absence of phosphorylation RRs can exist in equilibrium between monomers and dimers with phosphorylation shifting the equilibrium toward the dimer form. We have determined the crystal structure of the unphosphorylated dimeric BaeR from Escherichia coli. The dimer interface is formed by a domain swap at the receiver domain. In comparison with the unphosphorylated dimeric PhoP from Mycobacterium tuberculosis, BaeR displays an asymmetry of the effector domains.     

Disinfection Alternatives for Control of Ditylenchus dipsaci in Garlic Seed Cloves

Hot-water dips with and without the additives abamectin and sodium hypochlorite were evaluated for control of Ditylenchus dipsaci infection of garlic seed cloves. All treatments were compared to hot water-formalin clove dip disinfection and to nontreated infected controls for garlic emergence, midseason infection, bulb damage, and yield at harvest in field plots in 12 experiments. Hot-water treatments without additives only partially controlled D. dipsaci when a warming presoak dip (38 C) of 30, 45, or 60 minutes'' duration was followed by a hot-water dip (49 C) of 15-30 minutes'' duration. Exposure to 49 C for 30 minutes caused slight retardation of garlic emergence, although normal stand was established. Abamectin at 10-20 ppm as the 20-minute hot dip (49 C) or as a 20-minute cool dip (18 C) following a 20-minute hot-water dip and sodium hypochlorite at 1.052-1.313% aqueous solution as the 20-minute hot dip were highly effective in controlling D. dipsaci and were noninjurious to garlic seed cloves. None of these treatments was as effective as a hot water-formalin dip and were noneradicative, but showed high efficacy on heavily infected seed cloves relative to nontreated controls. Abamectin was most effective as a cool dip. These abamectin cool-dip (following hot-water dip) and sodium hypochlorite hot-dip treatments can be considered as effective alternatives to replace formalin as a dip additive for control of clove-borne D. dipsaci. Sodium hypochlorite was less effective as the cool dip, and at concentrations of 1.75-2.63% was phytotoxic to garlic.