The epidemic process as a system. I. The structure of the epidemic process

A new epidemiological concept (socio-ecological) has been formulated on the basis of the principles of the theory of systems and the theory of information. In accordance with this concept, the epidemic process is organized on the same principle as living matter, and the stability of this process at all levels of its organization is ensured by the processes of self-regulation. The conditions of the life of human society have been shown to be organically incorporated into the structure of the epidemic process as a regulating subsystem on the socio-ecological level.     

The metal site as a template for the metalloprotein structure formation.

Achieving a thorough explanation of the behavior of metal sites in the formation of native metalloprotein structures is an exciting challenge in the biochemistry of metallobiomacromolecules. This study presents a personal insight into the subject. It is proposed that a metal center and its exogenous ligand compose a template. A template may impose a clear stereochemical preference on the loose peptide chains, and organize them into natural stereospecificity via the metal-ligand interaction, a long-range and strong interaction. Therefore, the stable peptide conformation induced by the template effect surrounding a template polyhedron could be called a template-mediated structural motif (TMSM).     

The structure of a model pulmonary surfactant as revealed by scanning force microscopy.

The structures formed by a pulmonary surfactant model system of dipalmitoylphosphatidylcholine (DPPC), dipalmitoylphosphatidylglycerol (DPPG), and recombinant surfactant-associated protein C (SP-C) were studied using scanning force microscopy (SFM) on Langmuir-Blodgett films. The films appeared to be phase separated, in agreement with earlier investigations by fluorescence light microscopy. There were smooth polygonal patches of mostly lipid, surrounded by a corrugated rim rich in SP-C. When the films were compressed beyond the equilibrium surface pressure, the protein-rich phase mediated the formation of layered protrusions. The height of these multilamellar structures embodied equidistant steps slightly higher than a DPPC double layer in the gel phase. At the air-water interface too, a high compressibility at low surface tension was indicative of the exclusion of matter. The exclusion process proved to be fully reversible. The present study demonstrates that some of the matter of the model pulmonary surfactant can move in and out of the active monolayer. The SFM images revealed a lipid-protein complex that was responsible for the reversible exclusion of double-layer structures. This mechanism may be important in the natural system too, to keep the surface tension of the alveolar air/water interface constantly low over the range of area encountered upon breathing.     

Honeydew as a contact kairomone for aphid parasitoids

Aphidius rhopalosiphi De Stefani-Perez, four other primary parasitoids and three hyperparasitoids of cereal aphids responded to cereal aphid honeydew on filter paper discs by greatly increasing visit times. Both female and male parasitoids responded, females generally more strongly. A. rhopalosiphi females were shown to habituate to honeydew, and to dishabituate fully in 90 min. Their response increased with increasing concentrations of honeydew up to 0.25 mg/l, but no further increase was detected at 0.5 mg/l. The response did not occur when direct contact with the treated paper was prevented. A. rhopalosiphi responded to some honeydew from non-host aphids as strongly as to that from host aphids. A. rhopalosiphi responded to the honeydew produced by Metopolophium dirhodum (Walker) reared on artificial diet and to the diet itself as strongly as to honeydew from M. dirhodum reared on wheat. The response of A. rhopalosiphi to honeydew therefore appears not to be caused by specific plant chemicals in the honeydew, and is probably not caused by aphid-specific chemicals. The results are discussed in relation to host location by A. rhopalosiphi.

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Résumé Les parasitoïdes primaires de pucerons des céréales: Aphidius rhopalosiphi, A. picipes, A. ervi, Praon volucre et Ephedrus plagiator, ainsi que leurs hyperparasitoïdes, Dendrocerus carpenteri, Phaenoglyphis villosa et Alloxysta victrix ont réagi à du miellat de Sitobion avenae imbibant des disques de papier filtre, en prolongeant beaucoup leur temps de visite. Les femelles et les mâles ont réagi, mais les femelles généralement plus fortement. L'augmentation du temps de visite était probablement provoqué par la diminution de leur vitesse dans les zones traitées, leur tendance à séjourner dans ces zones et à y retourner après les avoir quittées.Les femelles de A. rhopalosiphi s'habituaient au miellat, mais s'en déshabituaient totalement en 90 minutes. Leurs réactions augmentaient avec la concentration en miellat jusqu'à 0,25 mg/l, sans qu'il y ait eu une nouvelle augmentation à 0,5 mg/l. La réaction était supprimée en absence de contact direct avec le papier. A. rhopalosiphi a repondu à quelques miellats produits par des non-hôtes aussi fortement qu'à celui de ses hôtes. A. rhopalosiphi a réagi au miellat produit par Metopolophium dirhodum, élevé sur milieu artificiel, et au milieu nutritiflui-même, aussi fortement qu'au miellat de M. dirhodum élevé sur du blé. Ainsi, la réponse d'A. rhopalosiphi à un miellat apparait comme n'étant pas due à la présence de substances chimiques spécifiques de plantes, ni, probablement, à des substances produites par les pucerons. Les résultats sont discutés en relation avec la localisation de l'hôte par A. rhopalosiphi.

     

Protein-polynucleotide scattering centers as a protein structure probe.

When certain basic globular proteins are mixed with nucleic acids near a critical concentration ratio, large, low density scattering centers of about 10(9) particle weight are created. Scattering from these complexes is altered when thermally inactivated proteins are substituted for enzymes in their native, globular conformation. Scattering data from heat-treated ribonuclease and lysozyme mixed with four different synthetic homopolyribonucleotides are reported. The concentration of nucleic acid necessary to produce maximum scattering from a heat-treated protein sample is shown to be a direct indication of the amount of enzyme that remains biologically active after being heated.     

Completed Bacillus subtilis nucleoid as a doublet structure.

When outgrowing spores of the temperature-sensitive dna initiation mutants of Bacillus subtilis, TsB134 and dna-1, were allowed to undergo a single round of replication by shifting to the restrictive temperature soon after its initiation, both segregating daughter nucleoids appeared as clearly defined doublet structures. The components of each doublet remained together as a discrete pair, even under conditions which resulted in the formation of deoxyribonucleic acid (DNA)-less cells. A doublet nucleoid was also observed at a high frequency when TsB134 spores were allowed to germinate and grow out in the complete absence of DNA synthesis at the permissive temperature. TsB134 spores were foud to contain the usual "haploid" amount of DNA. It is suggested that the doublet nucleoid reflects a folding of a single chromosome into two large domains which resolve from one another under conditions of cell extension in the absence of DNA synthesis.     

Carotenoids as a Raman-active probes of erythrocyte membrane structure.

1. Erythrocyte ghosts exhibit resonance-enhanced Raman bands at 1530 cm(-1) and 1165 cm(-1) attributable to v(-C=C-) and v(=C-C=), respectively, of the conjugated polyene chains in carotenoids. In lipid extract of ghosts, these resonance-enhanced bands lie at 1527 and 1158 cm(-1). The spectra indicate the presence of membrane-bound beta-carotene. 2. The resonance-enhanced Raman spectrum of beta-carotene in lecithin liposomes is identical to that obtained with hexane or chloroform solutions. 3. Increasing proportions of cholesterol in cholesterol-lecithin liposomes up to a cholesterol: phospholipid molar ratio of 0.8-0.9 drastically decreases the intensity of both resonance-enhanced bands. 4. In ghosts the carotenoid bands respond to membrane perturbations. Trypsinization, lysolecithin treatment and reduction of pH increase the intensities of the 1530 and 1165 cm(-1) bands. In contrast, a decrease in the intensity of both bands follows equilibration of ghosts for 15 min at approx. 50 degrees C or addition of (0.1%) sodium dodecyl sulfate. 5. We suggest that perturbants known to change lipid-protein interactions in erythrocyte membranes modify the microenvironment and/or configuration of the membrane-bound carotenoid.     

Confinement as a determinant of macromolecular structure and reactivity.

The confinement of macromolecules within enclosures or "pores" of comparable dimensions results in significant size- and shape-dependent alterations of macromolecular chemical potential and reactivity. Calculations of the magnitude of this effect for model particles of different shapes in model enclosures of different shapes were carried out using hard particle partition theory developed by Giddings et al. (J. Phys. Chem. 1968. 72:4397-4408). Results obtained indicate that the equilibrium constants of reactions, such as isomerization, self-association, and site binding, that result in significant change in macromolecular size, shape, and/or mobility may be altered within pores by as much as several orders of magnitude relative to the value in the unbounded or bulk phase. Confinement also produces a substantial size-dependent outward force on the walls of an enclosure. These results are likely to be important within the fluid phase of biological media, such as the cytoplasm of eukaryotic cells, containing significant volume fractions of large fibrous structures (e.g., the cytomatrix).     

The structure of Pseudomonas fluorescens biofilms in contact with flowing systems

Using a specially designed flow system Pseudomonas fluorescens has been grown on the inside of glass tubes under carefully controlled conditions. Results show that films developed from water flowing at 0–5 m.s^‐1 are less compact and thicker than with a water velocity of 2–5 m.s^‐1. In the latter all the cells are aligned in the direction of flow whereas in the former the individual cells directly attached to the surface, are randomly distributed with groups of cells lying parallel to the tube axis.     

The chromosome as a dynamic structure of the cell nucleus

Out view of eukaryotic chromosomes is still very much dictated by the classic ideas of geneticists and cytologists considering the chromosome just as a vehicle for genes. This one-sided view of chromosomes may have been strongly influenced by the many cytological observations made on polytene chromosomes.     

The behaviour of coupled biochemical oscillators as a model of contact inhibition of cellular division

Intercellular communication of molecules between normal cells by tight junctions, and lack of this in some cancer cells (Loewenstein), can explain contact inhibition of cellular division in tissues. A general theory has been based on assuming the continual rise and fall (intrinsic oscillation) of a key substance x in each cell, with the period of the cell cycle. Periods are asynchronous in different cells, and x is exchanged between cells in contact by diffusion. A reduction in the resultant amplitude of fluctuation of x results, so that it does not reach the threshold x_t required for division to ensue; hence contact inhibition.The mathematical model is defined in its simplest form, and the sets of differential equations for arrays of cells are solved, from the isolated cell to the cell in an infinite sheet. The relative probability of division, P, is computed by numerical analysis from the area of resultant curves of x that lies above the threshold x_t. P depends on four dimensionless parameters, the order of coupling n (the number of cells directly communicating with a given cell), the total number of cells N in the aggregate, the communication constant K, and x_t, as a fraction of the amplitude of the intrinsic oscillation. The degree of synchrony, measured by the coefficient of variation σ of the periods, is important. If σ < ± 4%, contact inhibition is much reduced. The theory predicts that a paradoxical “contact-facilitation” is possible for very small aggregates of cells. For a cell in an infinite sheet, the amplitude of oscillation of x is reduced approximately by the factor $\text{1}\text{nK}$. For normal cells K is probably > 1, for cancer cells that lack communication, K is probably «< 1. However, two other basic causes for lack of regulation of tissue growth (cancer) could be excessive intrinsic oscillation of x, cf. x_t, and partial or complete synchronization of groups of cells by some unknown mechanism.     

Synapses with a different synaptic contact structure in the cerebellar cortex

The ultrastructure of cerebellar axosomatic (inhibitory) and axo-dendritic (excitatory) synapses were studied on the Purkinje cells and in the lower molecular layer of guinea-pigs and rats, respectively. It was shown that synaptic contacts of excitatory and inhibitory synapses differed in the existence of desmosome-like structures near the active zones. The classification of synaptic functions according to the ultrastructure of specialized contacts, earlier developed to identify neurons of lower vertebrates, is supposed to be applicable to the nervous system of higher vertebrates.     

A genetic code Boolean structure. II. The genetic information system as a Boolean information system

A Boolean structure of the genetic code where Boolean deductions have biological and physicochemical meanings was discussed in a previous paper. Now, from these Boolean deductions we propose to define the value of amino acid information in order to consider the genetic information system as a communication system and to introduce the semantic content of information ignored by the conventional information theory. In this proposal, the value of amino acid information is proportional to the molecular weight of amino acids with a proportional constant of about 1.96×10²⁵ bits per kg. In addition to this, for the experimental estimations of the minimum energy dissipation in genetic logic operations, we present two postulates: (1) the energy E _i (i = 1, 2, ..., 20) of amino acids in the messages conveyed by proteins is proportional to the value of information, and (2) amino acids are distributed according to their energy E _i so the amino acid population in proteins follows a Boltzmann distribution. Specifically, in the genetic message carried by the DNA from the genomes of living organisms, we found that the minimum energy dissipation in genetic logic operations was close to kTLn(2) joules per bit.     

The surface structure of well-ordered native cellulose fibrils in contact with water

CP/MAS ¹³C NMR spectroscopy was used in combination with spectral fitting to examine the surface structure of hydrated cellulose I fibrils from Halocynthia and Gluconoacetobacter xylinus. To increase the spectral intensities and minimize signal overlap, G. xylinus celluloses site-specifically enriched in ¹³C either on C4 or on both C1 and C6 were examined. The experimental data showed multiple C4 and C6 signals for the water accessible fibril surfaces in the highly crystalline celluloses. These signal multiplicities were attributed to structural features in the surface layers induced by the fibril interior, and could not be extracted by spectral fitting in celluloses with a lower degree of crystallinity such as cellulose from cotton.