Thinopyrum distichum addition lines: production,morphological and cytological characterisation of 11 disomic addition lines and stable addition-substitution line

Plants of the partial amphiploid Inia 66/Thinopyrum distichum (2n = 70)//Inia 66 (2n = 56) were used as male parents in crosses with the monosomic series in the common wheat cultivar Inia 66. The genome and homoeologous group of the monosomic used in the cross affected the distribution of chromosome number of the progeny plants in the F₂ and F₄. Meiosis in the pollen mother cells of the B₁F₇ partial amphiploids was not stable, and not different from that of the B₁F₁ in which univalents and multivalents were observed. Disomic addition lines were selected on the basis of morphology and meiotic stability in the F₂, F₄ and F₅. Eleven of the fourteen possible wheat-Th. distichum disomic addition lines were identified using chromosome C-band pattern, as well as size and arm ratio, as genetic markers. Addition of T. distichum chromosome J ^dll produced a phenotype indicating homoeology with wheat group-2 chromosomes. Clear indications of homoeology based on morphological characteristics were not obtained in any of the other addition lines, probably due to the mixed homoeology of the Th. distichum chromosomes relative to wheat. The addition lines were all susceptible to leaf rust, unlike the germplasm-line Indis which carries a leaf rust resistance gene on a translocation segment derived from Th. distichum. Instability of meiotic pairing was observed in all addition lines. The stability, or not, of progeny chromosome counts did not reflect the level of chromosome pairing instability in the parental plants. SDS-PAGE for gliadin-type seed proteins revealed two addition lines which expressed seed storage proteins uncommon to Inia 66 but typical of Th. distichum.     

Establishment of a plant regeneration system for wheatgrasses (Thinopyrum,Agropyron and Pascopyrum)

Wheatgrasses (Thinopyrum, Agropyron and Pascopyrum spp.) are a ubiquitous group of cool-season grasses used throughout much of the semiarid temperate world. In order to explore the potential of biotechnology to accelerate conventional breeding efforts, we developed an efficient plant regeneration system for different wheatgrass species: tall wheatgrass [Thinopyrum ponticum (Podp.) Liu and Wang], intermediate and pubescent wheatgrass [Thinopyrum intermedium (Host) Barkw. and D.R. Dewey], crested wheatgrass [Agropyron cristatum (L.) Gaertner], and western wheatgrass [Pascopyrum smithii (Rydb.) Löve]. Embryogenic callus was induced from mature and immature embryos and immature inflorescence with an induction frequency in the range of 0.5–8.3% for the different wheatgrass species tested. Individual embryogenic calluses were then used to establish single genotype-derived suspension cultures. Efficient plant regeneration was achieved from the established em-bryogenic suspensions with regeneration frequencies in the range of 20–65% for tall wheatgrass, 21–40% for intermediate and pubescent wheatgrasses, 32–51% for crested wheatgrass, and 25–48% for western wheatgrass. The cell suspension-derived wheatgrass plants were fertile and phenotypically normal in the field. The efficient plant regeneration system provides a solid basis for genetic transformation of wheatgrasses.     

甘青地区四倍体小麦染色体C—带多态性

对来自甘肃、青海地区的5个圆锥小麦（Triticum turgidum L.)地方品种进行了染色体C－分带研究。结果表明,2AL上的强端带和3BL上的强端带为此类材料所特有的带,区别于其它地方的圆锥小麦地方品种,5个圆锥小麦地方品种-某些染色体上 定的多态性,其中黑芒白麦比其它4个品种C－带多态性较高,表明黑芒白麦与其它4个品种之间存在有较大的遗传分化。与普通小麦比较,揭示这5个品种多个染色体与普通小麦AB组染色体带型存在显著多态。     

C-band morphology of T(8;9)/8;9 in Blattella germanica

Summary Centromere position and each arm of the T(8;9)/8;9 quadrivalent at late pachytene can be recognized by C-banding. The chromosome 9 breakpoint lies immediately adjacent to the centromeric C-band; that of 8, in the general region of the centromere but the relationship to centromeric bands was not determined since the latter stain very faintly. Chromosome 9 differs from no. 8 in the presence of a complex series of intercalary bands, heavy centromeric bands and, overall, a larger amount of C-band material. Possible implications of these differences with respect to chromosome breakability and the nature and distribution of mutant loci are noted. Earlier identification of adjacent-1 and adjacent-2 metaphase I ring orientations, made on the basis of orientation pattern, was confirmed.     

福建大头蛙的核型及带型分析

利用骨髓细胞蒸气固定法制备染色体标本,研究了福建大头蛙(Limnonectesfujianensis)黄山居群的核型、C 带和Ag NORs。结果表明,福建大头蛙核型为2n =2 2 =2 0M 2SM ,NF =44,次缢痕位于No 1 0q ;各染色体均有着丝粒C 带,3p、9q出现插入型C 带;Ag NORs位于1 0q。     

Thinopyrum ponticum and Th. intermedium:the promising source of resistance to fungal and viral diseases of wheat

Thinopyrum ponticum and Th. intermedium provide superior resistance against various diseases in wheat （Ttricum aestivum）. Because of their readily crossing with wheat, many genes for disease resistance have been introduced from the wheatgrasses into wheat. Genes for resistance to leaf rust, stem rust, powdery mildew, Barley yellow dwarf virus, Wheat streak mosaic virus, and its vector, the wheat curl mite, have been transferred into wheat by producing chromosome translocations. These genes offer an opportunity to improve resistance of wheat to the diseases; some of them have been extensively used in protecting wheat from damage of the diseases. Moreover, new resistance to diseases is continuously detected in the progenies of wheat-Thinopyrum derivatives. The present article summaries characterization and application of the genes for fungal and viral disease-resistance derived from Th. ponticum and Th. intermedium.     

三个家猪品种和rob易位群染色体分带多态性的比较

对家猪不同品种及家系间的染色体组型、C－带、Ag－NORs多态性进行的研究表明：杜洛克猪、约克夏猪、长白猪体细胞染色体数2n＝38,核型2n＝10sm＋12m＋4st＋12t,而13／17易位纳合子猪（36,rob．13／17）的体细胞染色体数2n＝36,核型2n＝10sm＋12m＋6st＋8t;13／17易位杂合子猪（37,rob．13／17）的体细胞染色体数目为2n＝37,核型为2n＝10sm＋12m＋5st＋10t。5种家猪的C－带在13～18号染色体上存在大、中、小三种类型,且呈多态性分布。杜洛克猪、约克夏猪、长白猪、13／17易位纳合子猪、13／17易位杂合子猪的Ag－NORs均数分别为2．05、2．062．00、1．99、1．98,说明Ag－NORs在品种、个体及细胞间具有多态性.     

Whole-genome chromosome distribution during nuclear fragmentation of giant trophoblast cells of Microtus rossiaemeridionalis studied with the use of gonosomal chromatin arrangement

Gonosomal chromatin bodies (GCBs), i.e. blocks of condensed chromatin consisting of heterochromatized region of the sex chromosomes of the field vole M. rossiaemeridionalis, were used as a natural interphase chromosome marker in order to clarify the regularities of GCB rearrangement during nuclear fragmentation of secondary giant trophoblast cells (SGTCs) at the end of their differentiation. Cytophotometrical measurements of DNA content in the nuclei, nuclear fragments and simultaneously in the GCBs were made in the secondary giant SGTCs of field vole M. rossiaemeridionalis. In most cases 1 to 2 GCBs get into the nuclear fragments at different ploidy levels. In the nuclear fragments, GCB DNA content decreased mostly proportionally to DNA content in the whole fragments corresponding to 2c, 4c and 8c. The data obtained demonstrate a regular whole-genome chromosome distribution into nuclear fragments. A possible mechanism of nuclear fragmentation that largely ensures a balanced genome in nuclear fragments is discussed.     

提莫菲维小麦C—带和N—带异染色质的比较研究

利用C-带和N-带分别及连续处理技术对提莫菲维小麦(Triticum timopheevi Zhuk.)的染色体带型及异染色质的类型与分布进行比较分析。结果表明,提莫菲维小麦的4A染色体以及G-染色体组带型丰富,并具有明显的端带,其异染色质是多样化的。4G和6G为随体染色体,随体显带明显。在提莫菲维小麦的染色体中异染色质类型有:(1)只有C~ N~ 型(4A、4G、6G和7G染色体);(2)只有C~ N~-型(1A、5A、6A和7A染色体);(3)C~ N~ 和C~ N~-型(2A、3A、1G、2G、3G和5G染色体)。在C-带和N-带连续处理中,N-带异染色质的消失部位在1G、2G、3G和5G染色体的端部,3A染色体的着丝点附近以及染色体1A、2A、5A、6A和7A的着丝点附近及端部。本文还讨论了C-带和N-带异染色质的异同以及端部异染色质在G染色体组进化中的可能作用。     

Whole-genome chromosome distribution during nuclear fragmentation of giant trophoblast cells of Microtus rossiaemeridionalis studied with the use of gonosomal chromatin arrangement

Gonosomal chromatin bodies (GCBs), i.e. blocks of condensed chromatin consisting of heterochromatized region of the sex chromosomes of the field vole M. rossiaemeridionalis, were used as a natural interphase chromosome marker in order to clarify the regularities of GCB rearrangement during nuclear fragmentation of secondary giant trophoblast cells (SGTCs) at the end of their differentiation. Cytophotometrical measurements of DNA content in the nuclei, nuclear fragments and simultaneously in the GCBs were made in the secondary giant SGTCs of field vole M. rossiaemeridionalis. In most cases 1 to 2 GCBs get into the nuclear fragments at different ploidy levels. In the nuclear fragments, GCB DNA content decreased mostly proportionally to DNA content in the whole fragments corresponding to 2c, 4c and 8c. The data obtained demonstrate a regular whole-genome chromosome distribution into nuclear fragments. A possible mechanism of nuclear fragmentation that largely ensures a balanced genome in nuclear fragments is discussed.     

Mapping of homoeologous chromosome exchanges influencing quantitative trait variation in Brassica napus

Genomic rearrangements arising during polyploidization are an important source of genetic and phenotypic variation in the recent allopolyploid crop Brassica napus. Exchanges among homoeologous chromosomes, due to interhomoeologue pairing, and deletions without compensating homoeologous duplications are observed in both natural B. napus and synthetic B. napus. Rearrangements of large or small chromosome segments induce gene copy number variation (CNV) and can potentially cause phenotypic changes. Unfortunately, complex genome restructuring is difficult to deal with in linkage mapping studies. Here, we demonstrate how high‐density genetic mapping with codominant, physically anchored SNP markers can detect segmental homoeologous exchanges (HE) as well as deletions and accurately link these to QTL. We validated rearrangements detected in genetic mapping data by whole‐genome resequencing of parental lines along with cytogenetic analysis using fluorescence in situ hybridization with bacterial artificial chromosome probes (BAC‐FISH) coupled with PCR using primers specific to the rearranged region. Using a well‐known QTL region influencing seed quality traits as an example, we confirmed that HE underlies the trait variation in a DH population involving a synthetic B. napus trait donor, and succeeded in narrowing the QTL to a small defined interval that enables delineation of key candidate genes.     

C-band distribution,DNA content and base composition inAdoxa moschatellina (Adoxaceae), a plant with cold-sensitive chromosome segments

The chromosomes ofAdoxa moschatellina (2n = 36, paleo-4x) contain mostly terminal, occasionally intercalary, negatively heteropycnotic cold-induced regions which correspond to all major C-bands including the satellites, as revealed by sequential analysis. Positively C-stained are also centromeres, the dotlike arms of the 7 telocentric chromosome pairs, and some very narrow intercalary bands; their cold-sensitivity is hardly traceable. There exists a fraction of condensed interphase chromatin, at least after chilling, which is virtually not C-banded (possibly condensed euchromatin).The DNA amount is 14.3 pg (1 C). The heterochromatin content is 13.0%. The thermal melting profile (Tm corresponding to 38.6% GC) does not reveal a particular AT- or GC-rich fraction. Significantly, the heterochromatin respond to the Hy-banding procedure is neutral.The distribution of cold-sensitive regions in plants was analysed with the arm-frame method: Intercalary positions, clearly, are not especially favoured regions. The obvious deficiency at centromeric positions may depend on the action of natural selection against mechanically labile centromeric regions.Dedicated to Univ.-Prof. Dr.Lothar Geitler on the occasion of his 80th birthday.     

Size but not relatedness drives the spatial distribution of males within an urban population of Anolis carolinensis lizards

The way that individuals are spatially organized in their environment is a fundamental population characteristic affecting social structure, mating system, and reproductive ecology. However, for many small or cryptic species, the factors driving the spatial distribution of individuals within a population are poorly understood and difficult to quantify. We combined microsatellite data, remote sensing, and mark–recapture techniques to test the relative importance of body size and relatedness in determining the spatial distribution of male Anolis carolinensis individuals within a focal population over a five‐year period. We found that males maintain smaller home ranges than females. We found no relationship between male body size and home range size, nor any substantial impact of relatedness on the geographic proximity. Instead, the main driver of male spatial distribution in this population was differences in body size. We also found no evidence for offspring inheritance of their parent''s territories. Males were never sampled within their father''s territory providing strong support for male‐biased dispersal. This study introduces a novel approach by combining standard mark release capture data with measures of pairwise relatedness, body size, and GPS locations to better understand the factors that drive the spatial distribution of individuals within a population.     

The modal distribution of protein isoelectric points reflects amino acid properties rather than sequence evolution

Two-dimensional gel electrophoresis, a routine application in proteomics, separates proteins according to their molecular mass (M(r)) and isoelectric point (pI). As the genomic sequences for more and more organisms are determined, the M(r) and pI of all their proteins can be estimated computationally. The examination of several of these theoretical proteome plots has revealed a multimodal pI distribution, however, no conclusive explanation for this unusual distribution has so far been presented. We examined the pI distribution of 115 fully sequenced genomes and observed that the modal distribution does not reflect phylogeny or sequence evolution, but rather the chemical properties of amino acids. We provide a statistical explanation of why the observed distributions of pI values are multimodal.     

Interplay between genome organization and epigenomic alterations of pericentromeric DNA in cancer

In eukaryotic genome biology, the genomic organization inside the three-dimensional(3 D) nucleus is highly complex, and whether this organization governs gene expression is poorly understood. Nuclear lamina(NL)is a filamentous meshwork of proteins present at the lining of inner nuclear membrane that serves as an anchoring platform for genome organization. Large chromatin domains termed as lamina-associated domains(LADs), play a major role in silencing genes at the nuclear periphery. The interaction of the NL and genome is dynamic and stochastic. Furthermore, many genes change their positions during developmental processes or under disease conditions such as cancer, to activate certain sorts of genes and/or silence others. Pericentromeric heterochromatin(PCH) is mostly in the silenced region within the genome, which localizes at the nuclear periphery. Studies show that several genes located at the PCH are aberrantly expressed in cancer. The interesting question is that despite being localized in the pericentromeric region,how these genes still manage to overcome pericentromeric repression. Although epigenetic mechanisms control the expression of the pericentromeric region, recent studies about genome organization and genome-nuclear lamina interaction have shed light on a new aspect of pericentromeric gene regulation through a complex and coordinated interplay between epigenomic remodeling and genomic organization in cancer.     

Tissue-culture-facilitated production of aneupolyhaploid Thinopyrum ponticum and amphidiploid Hordeum violaceum x H. bogdanii and their uses in phylogenetic studies

Summary An aneupolyhaploid (2n = 36) of the decaploid Thinopyrum ponticum and an amphidiploid (2n = 28) of Hordeum violaceum x Hordeum bogdanii were produced through anther and inflorescence culture, respectively. Meiotic associations in pollen mother cells at metaphase I of these plants were analyzed. The aneupolyhaploid arose by direct embryogenesis from a microspore without passing through a callus phase. The mean pairing frequencies of 2.67 univalents ⁺ 0.54 rod bivalents ⁺ 8.85 ring bivalents ⁺ 2.75 trivalents ⁺ 0.17 chain quadrivalents ⁺ 0.56 ring quadrivalents ⁺ 0.65 pentavalents in the aneupolyhaploid (2n = 36) best fit the 221 model. However, the frequent multivalents (up to five trivalents, or three quadrivalents, or four pentavalents in a cell) indicated that decaploid T. ponticum has five sets of closely related genomes representable by the genome formula J₁ J₁ J₁ J₂ J₂. Colchicine treatment of inflorescence-derived H. violaceum x H. bogdanii regenerants greatly enhanced the rate of chromosome doubling, and completely doubled regenerants could be isolated. The H. violaceum x H. bogdanii amphidiploid had a mean pairing pattern of 12.53 univalents ⁺ 5.57 rod bivalents ⁺ 1.97 ring bivalents ⁺ 0.07 trivalents ⁺ 0.03 hexavalents, indicating the presence of desynaptic gene(s) in the original diploiid hybrid. Therefore, the pairing frequency in that diploid hybrid was an under-estimate of chromosome homology between the parental genomes, and additional diploid hybrids are needed to assess the genome homology between H. violaceum and H. bogdanii. These two contrasting experiments demonstrated that tissue culture techniques are useful in altering the ploidy level to produce plant materials suitable for genome analysis and phylogenetic studies.Cooperative investigation of the USDA-ARS, Forage and Range Research Laboratory, Logan, UT 84322-6300, and the Utah Agricultural Experiment Station, Utah State University, Logan, UT 84322-4810. Approved as journal paper No. 3991     

毛冠鹿种内异染色质变化与染色体多态

采用原代和传代培养方法对8头毛冠鹿(Elaphodus cephalophus)的皮肤细胞进行了染色体研究,发现了一种核型与以前所报道的几种核型不一致,确定为一新核型。在该核型中,染色体众数2n=47,2条X染色体异型,一条为端着丝粒,另一条为近端着丝粒。C-带显示该核型中异染色质除了分布在2条X染色体长臂中之外,在第一对大的端着丝粒染色体中的一条近着丝粒区出现一异染色质“柄”。结合C-带及薄层扫描结果对毛冠鹿种内常染色体、性染色体中异染色质的含量和分布与染色体多态的关系进行了探讨。     

Recombination,chromosome number and eusociality in the Hymenoptera

Extraordinarily high rates of recombination have been observed in some eusocial species. The most popular explanation is that increased recombination increases genetic variation among workers, which in turn increases colony performance, for example by increasing parasite resistance. However, support for the generality of higher recombination rates among eusocial organisms remains weak, due to low sample size and a lack of phylogenetic independence of observations. Recombination rate, although difficult to measure directly, is correlated with chromosome number. As predicted, several authors have noted that chromosome numbers are higher among the eusocial species of Hymenoptera (ants, bees and wasps). Here, we present a formal comparative analysis of karyotype data from 1567 species of Hymenoptera. Contrary to earlier studies, we find no evidence for an absolute difference between chromosome number in eusocial and solitary species of Hymenoptera. However, we find support for an increased rate of chromosome number change in eusocial taxa. We show that among eusocial taxa colony size is able to explain some of the variation in chromosome number: intermediate‐sized colonies have more chromosomes than those that are either very small or very large. However, we were unable to detect effects of a number of other colony characteristics predicted to affect recombination rate – including colony relatedness and caste number. Taken together, our results support the view that a eusocial lifestyle has led to variable selection pressure for increased recombination rates, but that identifying the factors contributing to this variable selection will require further theoretical and empirical effort.     

针茅水孔蛋白基因多态性分析及其地理分布

以分布于内蒙古的草甸草原(森林草原)、典型草原、荒漠草原上的7种针茅属植物为材料,利用聚合酶链反应-单链构象多态性(PCR-SSCP)方法,分析了水孔蛋白基因的外显子1和内含子1的遗传多态性.结果表明:外显子1有AA、BB和CC 3种基因型,内含子1有DD、EE、FF和GG 4种基因型;种间存在基因多态性,种内没有多态性,所有种均表现出遗传的单态性和100%的纯合度.从基因型地理分布看,AA基因型在草甸草原、森林草原、典型草原及荒漠草原区的针茅种上均有分布,BB、CC基因型只分布在荒漠草原区的针茅中;DD基因型分布于草甸草原、森林草原及典型草原区的针茅属植物中,荒漠草原区分布有EE、FF、GG等3种基因型.荒漠草原区的植物是旱生程度最强的一类草原群落,该区的3种针茅具有丰富的遗传多态性.     

Inhibition of Atm and/or Atr disrupts gene silencing on the inactive X chromosome

ATM and ATR are well documented for their roles in maintaining the integrity of genomic DNA by responding to DNA damage and preparing the cell for repair. Since ATM and ATR have been reported to exist in complexes with histone deacetylases, we asked whether Atm and Atr might also uphold gene silencing by heterochromatin. We show that the Atm/Atr inhibitor 2-aminopurine causes the inactive X chromosome to accumulate abnormal chromatin and undergo unwanted gene reactivation. We provide evidence that this gene expression from the inactive X chromosome is not a byproduct of the accumulation of DNA breaks. Individually inhibiting Atm and Atr by either small interfering RNA or the expression of dominant-negative ATM and ATR constructs also compromised X-inactivation. Atm and Atr, therefore, not only function in responding to DNA damage but perhaps also are involved in gene silencing via the maintenance of heterochromatin.