Energy and resource efficient workflow scheduling in a virtualized cloud environment

High energy consumption (EC) is one of the leading and interesting issue in the cloud environment. The optimization of EC is generally related to scheduling problem. Optimum scheduling strategy is used to select the resources or tasks in such a way that system performance is not violated while minimizing EC and maximizing resource utilization (RU). This paper presents a task scheduling model for scheduling the tasks on virtual machines (VMs). The objective of the proposed model is to minimize EC, maximize RU, and minimize workflow makespan while preserving the task’s deadline and dependency constraints. An energy and resource efficient workflow scheduling algorithm (ERES) is proposed to schedule the workflow tasks to the VMs and dynamically deploy/un-deploy the VMs based on the workflow task’s requirements. An energy model is presented to compute the EC of the servers. Double threshold policy is used to perceive the server’ status i.e. overloaded/underloaded or normal. To balance the workload on the overloaded/underloaded servers, live VM migration strategy is used. To check the effectiveness of the proposed algorithm, exhaustive simulation experiments are conducted. The proposed algorithm is compared with power efficient scheduling and VM consolidation (PESVMC) algorithm on the accounts of RU, energy efficiency and task makespan. Further, the results are also verified in the real cloud environment. The results demonstrate the effectiveness of the proposed ERES algorithm.

     

Migration cost and profit oriented cloud federation formation: hedonic coalition game based approach

Cloud federation has paved the way for cloud service providers (CSP) to collaborate with other CSPs to serve users’ resource requests, which are prohibitively high for any single CSP during peak time. Moreover, to entice different CSPs to participate in federation, it is necessary to maximize the profit of all CSPs involved in the federation. Further, federation enables overloaded CSPs to distribute their load among other underloaded member CSPs of federation by migrating the virtual machines (VM). Migration of VM among member CSPs of federation, also enables to increase the reliability and availability of cloud services on occurrence of faults in the datacenters of CSPs. Thus it becomes important for CSPs to form a federation with other CSPs, in such a way that the migration cost of VMs between CSPs of the same federation is minimized and simultaneously profit of CSPs in federation is maximized. In this paper, we model the problem of forming federation among CSPs as a hedonic coalition game, with a utility function depending on profit and migration cost, with the objective of maximizing the former and minimizing the latter. We propose an algorithm to solve this hedonic game and compare its performance with other existing game-theory based cloud federation formation mechanisms.     

Simultaneous application assignment and virtual machine placement via ant colony optimization for energy-efficient enterprise data centers

Cluster Computing - Enterprise cloud data centers consume a tremendous amount of energy due to the large number of physical machines (PMs). These PMs host a huge number of virtual machines (VMs),...     

VMCast: A VM-Assisted Stability Enhancing Solution for Tree-Based Overlay Multicast

Tree-based overlay multicast is an effective group communication method for media streaming applications. However, a group member’s departure causes all of its descendants to be disconnected from the multicast tree for some time, which results in poor performance. The above problem is difficult to be addressed because overlay multicast tree is intrinsically instable. In this paper, we proposed a novel stability enhancing solution, VMCast, for tree-based overlay multicast. This solution uses two types of on-demand cloud virtual machines (VMs), i.e., multicast VMs (MVMs) and compensation VMs (CVMs). MVMs are used to disseminate the multicast data, whereas CVMs are used to offer streaming compensation. The used VMs in the same cloud datacenter constitute a VM cluster. Each VM cluster is responsible for a service domain (VMSD), and each group member belongs to a specific VMSD. The data source delivers the multicast data to MVMs through a reliable path, and MVMs further disseminate the data to group members along domain overlay multicast trees. The above approach structurally improves the stability of the overlay multicast tree. We further utilized CVM-based streaming compensation to enhance the stability of the data distribution in the VMSDs. VMCast can be used as an extension to existing tree-based overlay multicast solutions, to provide better services for media streaming applications. We applied VMCast to two application instances (i.e., HMTP and HCcast). The results show that it can obviously enhance the stability of the data distribution.     

Distributed File System Virtualization Techniques Supporting On-Demand Virtual Machine Environments for Grid Computing

This paper presents a data management solution which allows fast Virtual Machine (VM) instantiation and efficient run-time execution to support VMs as execution environments in Grid computing. It is based on novel distributed file system virtualization techniques and is unique in that: (1) it provides on-demand cross-domain access to VM state for unmodified VM monitors; (2) it enables private file system channels for VM instantiation by secure tunneling and session-key based authentication; (3) it supports user-level and write-back disk caches, per-application caching policies and middleware-driven consistency models; and (4) it leverages application-specific meta-data associated with files to expedite data transfers. The paper reports on its performance in wide-area setups using VMware-based VMs. Results show that the solution delivers performance over 30% better than native NFS and with warm caches it can bring the application-perceived overheads below 10% compared to a local-disk setup. The solution also allows a VM with 1.6 GB virtual disk and 320 MB virtual memory to be cloned within 160 seconds for the first clone and within 25 seconds for subsequent clones. Ming Zhao is a PhD candidate in the department of Electrical and Computer Engineering and a member of the Advance Computing and Information Systems Laboratory, at University of Florida. He received the degrees of BE and ME from Tsinghua University. His research interests are in the areas of computer architecture, operating systems and distributed computing. Jian Zhang is a PhD student in the Department of Electrical and Computer Engineering at University of Florida and a member of the Advance Computing and Information Systems Laboratory (ACIS). Her research interest is in virtual machines and Grid computing. She is a member of the IEEE and the ACM. Renato J. Figueiredo received the B.S. and M.S. degrees in Electrical Engineering from the Universidade de Campinas in 1994 and 1995, respectively, and the Ph.D. degree in Electrical and Computer Engineering from Purdue University in 2001. From 2001 until 2002 he was on the faculty of the School of Electrical and Computer Engineering of Northwestern University at Evanston, Illinois. In 2002 he joined the Department of Electrical and Computer Engineering of the University of Florida as an Assistant Professor. His research interests are in the areas of computer architecture, operating systems, and distributed systems.     

Plasma and vacuolar membrane sphingolipidomes: composition and insights on the role of main molecular species

Lipid structures affect membrane biophysical properties such as thickness, stability, permeability, curvature, fluidity, asymmetry, and interdigitation, contributing to membrane function. Sphingolipids are abundant in plant endomembranes and plasma membranes (PMs) and comprise four classes: ceramides, hydroxyceramides, glucosylceramides, and glycosylinositolphosphoceramides (GIPCs). They constitute an array of chemical structures whose distribution in plant membranes is unknown. With the aim of describing the hydrophobic portion of sphingolipids, 18 preparations from microsomal (MIC), vacuolar (VM), PM, and detergent-resistant membranes (DRM) were isolated from Arabidopsis (Arabidopsis thaliana) leaves. Sphingolipid species, encompassing pairing of long-chain bases and fatty acids, were identified and quantified in these membranes. Sphingolipid concentrations were compared using univariate and multivariate analysis to assess sphingolipid diversity, abundance, and predominance across membranes. The four sphingolipid classes were present at different levels in each membrane: VM was enriched in glucosylceramides, hydroxyceramides, and GIPCs; PM in GIPCs, in agreement with their key role in signal recognition and sensing; and DRM in GIPCs, as reported by their function in nanodomain formation. While a total of 84 sphingolipid species was identified in MIC, VM, PM, and DRM, only 34 were selectively distributed in the four membrane types. Conversely, every membrane contained a different number of predominant species (11 in VM, 6 in PM, and 17 in DRM). This study reveals that MIC, VM, PM, and DRM contain the same set of sphingolipid species but every membrane source contains its own specific assortment based on the proportion of sphingolipid classes and on the predominance of individual species.

Sphingolipidomes from microsomes, vacuole, plasma, and detergent-resistant membranes from Arabidopsis are described and compared and the possible roles of sphingolipid classes and individual species are discussed.     

Association study between of Tie2/Angiopoietin-2 and VEGF/KDR pathway gene polymorphisms and vascular malformations

Vascular malformations (VMs) are common congenital and neonatal dysmorphogenesis. VMs mostly occur sporadically with a few exceptions of inheritability. Tie2/angiopoietins-2 (Ang-2) and VEGF/KDR pathways are known to be involved in normal and pathogenic angiogenesis. Our study was aimed to test the contribution of these pathway gene variants to VMs. A total of 8 variants were found among 103 VM patients and 142 healthy controls. These variants comprised rs638203, rs639225, rs80338908 and rs80338909 in Tie2 gene, rs1870377 and rs2305949 in KDR gene, rs79337921 and rs34590960 in ANTXR1 gene. Our results indicated that rs638203 (p = 0.029) and rs639225 (p = 0.018) in Tie2 gene were associated with VM. A further bioinformatics analysis suggested the rs638203-G and rs639225-G might cause an abnormal splicing of Tie2 gene into to a defective protein. Our results identified two novel Tie2 gene polymorphisms with genetic susceptibility to VMs, although future functional validation of the two polymorphisms is warranted in the future.     

Molecular structure of the peritrophic membrane (PM): identification of potential PM target sites for insect control

Peritrophic membranes (PMs) are an invertebrate-unique structure that lines the digestive tract, playing important roles in facilitating food digestion and providing protection to the gut epithelium. The importance of PMs in insects has been recognized ever since its presence was identified 200 years ago. In the last 5 years, significant progress towards understanding the PM molecular structure and the mechanism for PM formation has been made. Recent studies on Type 1 PMs from lepidopteran larvae have suggested a model for the PM molecular structure and formation. The important physiological functions of the PM suggest that PMs can be a significant structural target for insect control and the current understanding of the structure of lepidopteran larval PMs has provided us with potential opportunities for targeting the PM by various mechanisms.     

Improved Albendazole Dissolution Rate in Pluronic 188 Solid Dispersions

Solids dispersions (SDs) have been proposed as an alternative to improve the dissolution rate of low solubility drugs. SDs containing albendazole (ABZ; 5, 10, 25, and 50% w/w) and Pluronic 188 (P 188) as hydrophilic carrier were formulated. The obtained SDs were assessed in comparison to physical mixtures (PMs). Drug–polymer interactions in solid state were investigated using Fourier-transform infrared spectroscopy, scanning electron microscopy, and X-ray diffraction analysis. No chemical interaction was found between ABZ and poloxamer. The dissolution profiles indicated that ABZ incorporated in SDs and PMs was rapidly released, reaching rapidly the steady state. Increased dissolution rates are usually observed at the highest polymer proportions. However, an opposite effect for SDs as well as for PMs was observed in the assays described here. The systems with the lowest P 188 percentages (SD4, SD3; PM4, PM3) tended to be more effective in increasing the ABZ dissolution rate. Such a result can be attributed to the fact that concentrated aqueous solutions of Poloxamer may form thermo-reversible gels. The physical–mechanical properties indicated that SDs possess improved flow and compacting properties compared to PMs. Thus, ABZ SDs would be more convenient for solid dosage form design and manufacture.     

Electrical-to-mechanical coupling in purple membranes: membrane as electrostrictive medium

In this paper, we present acousto-electrical measurements performed on dry films of purple membranes (PM) of Halobacterium salinarium. The purpose of these measurements is to determine the relation between mechanical and electrical phenomena in bacteriorhodopsin and to define the role of the protein in the proton transfer process. Electrical-to-mechanical coupling in PMs manifests itself as direct and inverse piezoelectric effects. Measurements performed on the samples with different degrees of PM orientation and at various values of the externally applied cross-membrane electric field indicate that piezoelectric phenomena in PMs arise from the electric asymmetry of the membranes, i.e., they originate from electrostriction. Experiments with samples made of oriented PMs allow estimation of the value of the intrinsic cross-membrane electric field, which is approximately 10(8) V/m. A hypothetical model of PM is presented where the electrical-to-mechanical coupling is suggested to be the main driving force for the proton translocation against the Coulomb forces acting in the membrane.     

Mvmotion: a metadata based virtual machine migration in cloud

As one of the most important features of virtualization, virtual machine (VM) migration provides great benefits for load balancing, resources-saving, fault tolerance in modern cloud data centers. Considering the network traffic caused by transferring data during VM migration imposes a huge pressure on network bandwidth of cloud data centers, and by analyzing the characteristic of the transferred data, we found that the redundant data, which is produced between two physical hosts by hosting virtual machines cloned from same VM template, can be reduced to relieve the network traffic pressure. This paper presents a Metadata based VM migration approach (Mvmotion) to reduce the amount of transferred data during migration by utilizing memory de-redundant technique between two physical hosts. Mvmotion utilizes the hash based fingerprints to generate Metadata of memory, which is used to identify redundant memory of VMs between two hosts. Based on the Metadata, the transfer of redundant memory data during migration can be eliminated. Experiment demonstrates that, compare to Xen’s default migration approach, Mvmotion can reduce the total transferred data by 29–97 %, and decreases the migration time by 16–53 %.     

The peritrophic membrane of the gastropod Megathura crenulata: structure,composition, and site of formation

Peritrophic membranes (PMs) are acellular layered structures secreted around ingested materials by the gut epithelium. Most studies on PMs have focused on those of insects and crustaceans due to their potential ability to block the movement of pathogens from ingested materials into the body, and their possible use as unique targets relevant to pest management. While PMs are known to occur in other taxa, their distribution is spotty and little is known about their role in these other species. The gastropod Megathura crenulata produces a true PM, which has a chitinous matrix that makes up nearly half its wet weight. Unlike arthropod PMs, which are released by delamination from the microvilli of their gut cells, the chitinous matrix of the M. crenulata PM is secreted from epithelial cells lining most regions of its gut. Although its mode of synthesis is unique, it may serve the same functions as proposed for other PMs, including regulating diffusion, binding metabolites, restricting protease activity, blocking pathogens, and providing lubrication. In arthropods, numerous proteins with chitin‐binding specificities have been identified, consistent with the proposed functions. Analysis of PMs in M. crenulata showed several integral proteins associated with the membrane, suggesting that the PM in this mollusc may be involved in complex functions like those seen in the arthropods.     

Actin microfilaments regulate vacuolar structures and dynamics: dual observation of actin microfilaments and vacuolar membrane in living tobacco BY-2 Cells

Actin microfilaments (MFs) participate in many fundamental processes in plant growth and development. Here, we report the co-localization of the actin MF and vacuolar membrane (VM), as visualized by vital VM staining with FM4-64 in living tobacco BY-2 cells stably expressing green fluorescent protein (GFP)-fimbrin (BY-GF11). The MFs were intensively localized on the VM surface and at the periphery of the cytoplasmic strands rather than at their center. The co-localization of MFs and VMs was confirmed by the observation made using transient expression of red fluorescent protein (RFP)-fimbrin in tobacco BY-2 cells stably expressing GFP-AtVam3p (BY-GV7) and BY-2 cells stably expressing gamma-tonoplast intrinsic protein (gamma-TIP)-GFP fusion protein (BY-GG). Time-lapse imaging revealed dynamic movement of MF structures which was parallel to that of cytoplasmic strands. Disruption of MF structures disorganized cytoplasmic strand structures and produced small spherical vacuoles in the VM-accumulating region. Three-dimensional reconstructions of the vacuolar structures revealed a disconnection of these small spherical vacuoles from the large vacuoles. Real-time observations and quantitative image analyses demonstrated rapid movements of MFs and VMs near the cell cortex, which were inhibited by the general myosin ATPase inhibitor, 2,3-butanedion monoxime (BDM). Moreover, both bistheonellide A (BA) and BDM treatment inhibited the reorganization of the cytoplasmic strands and the migration of daughter cell nuclei at early G1 phase, suggesting a requirement for the acto-myosin system for vacuolar morphogenesis during cell cycle progression. These results suggest that MFs support the vacuolar structures and that the acto-myosin system plays an essential role in vacuolar morphogenesis.     

The chick's marginal zone and primitive streak formation. II. Quantification of the marginal zone's potencies--temporal and spatial aspects

When a posterior fragment of the chick's marginal zone (PM) was exchanged with equal sized lateral marginal zone fragment (LM), of the same blastoderm, its capacity to initiate an ectopic primitive streak (PS) was found to be both size and stage dependent. Good correlation was demonstrated between the areas of PM fragments and the number of cells they contained. In stage X blastoderms, PM fragments containing less than 1200 cells were incapable of initiating an ectopic PS. Transplanted PMs containing between 1200 and 1500 cells initiated a lateral ectopic PS in 50% of the cases, while in the other 50% a posterior PS developed from the original posterior side. PMs containing 1500 cells or more in all cases initiating an ectopic PS and inhibited the formation of a posterior PS. At stage XI, laterally transplanted PMs containing less than 1800 cells were not effective. Stage XI PMs containing 1800-2300 cells in some cases succeeded in initiating a lateral ectopic PS, in addition to the posterior one. Stage XI PMs containing 2300 cells or more invariably promoted the development of an ectopic PS, but were unable to suppress the formation of a posterior PS, so that two PSs developed in the same blastoderm, one posterior and one ectopic. When a stage XI PM fragment was laterally transplanted into a younger, stage X blastoderm, the minimal effective cell number needed to initiate an ectopic PS increased to at least 3000 cells, again without inhibiting the formation of a posterior PS. The inductive potential of a stage X PM is therefore at least twice that of a stage XI PM. The marginal zone belt of stage X blastoderms was checked for the decrease in its developmental potential from the posterior to the lateral side by evaluating its effect on the developmental expression of two competing stage X PMs, one located posteriorly and the other inserted laterally. The developmental expression of the laterally inserted PM was consistently inferior to that of the posterior PM. The developmental expression of each PM was not related to absolute size, but depended on the size ratio of lateral PM/posterior PM. When the ratio was 1.2 or less, only posterior PSs developed. When the ratio was 1.3-1.4, three different results were encountered: (1) only a posterior PS, (2) posterior plus lateral, and (3) only lateral PS. When the ratio was 1.5 or more, only a lateral PS developed, which suppressed the posterior PS.     

RALBA: a computation-aware load balancing scheduler for cloud computing

Cloud computing serves as a platform for remote users to utilize the heterogeneous resources in data-centers to compute High-Performance Computing jobs. The physical resources are virtualized in Cloud to entertain user services employing Virtual Machines (VMs). Job scheduling is deemed as a quintessential part of Cloud and efficient utilization of VMs by Cloud Service Providers demands an optimal job scheduling heuristic. An ideal scheduling heuristic should be efficient, fair, and starvation-free to produce a reduced makespan with improved resource utilization. However, static heuristics often lead to inefficient and poor resource utilization in the Cloud. An idle and underutilized host machine in Cloud still consumes up to 70% of the energy required by an active machine (Ray, in Indian J Comput Sci Eng 1(4):333–339, 2012). Consequently, it demands a load-balanced distribution of workload to achieve optimal resource utilization in Cloud. Existing Cloud scheduling heuristics such as Min–Min, Max–Min, and Sufferage distribute workloads among VMs based on minimum job completion time that ultimately causes a load imbalance. In this paper, a novel Resource-Aware Load Balancing Algorithm (RALBA) is presented to ensure a balanced distribution of workload based on computation capabilities of VMs. The RABLA framework comprises of two phases: (1) scheduling based on computing capabilities of VMs, and (2) the VM with earliest finish time is selected for jobs mapping. The outcomes of the RALBA have revealed that it provides substantial improvement against traditional heuristics regarding makespan, resource utilization, and throughput.     

Plant-mediated alteration of the peritrophic matrix and baculovirus infection in lepidopteran larvae

The peritrophic matrix (PM) lines the midgut of most insects, providing protection to the midgut epithelial cells while permitting passage of nutrients and water. Herein, we provide evidence that plant-mediated alteration of the PM contributes to the well-documented inhibition of fatal infection by Autographa californica multiple nucleopolyhedrovirus (AcMNPV) of Heliothis virescens F. larvae fed cotton foliage. We examined the impact of the PM on pathogenesis using a viral construct expressing a reporter gene (AcMNPV-hsp70/lacZ) orally inoculated into larvae with either intact PMs or PMs disrupted by Trichoplusia ni granulovirus occlusion bodies containing enhancin, known to degrade insect intestinal mucin. Larvae possessing disrupted PMs displayed infection foci (lacZ signaling) earlier than those with intact PMs. We then examined PMs from larvae fed artificial diet or plant foliage using electron microscopy; foliage-fed larvae had significantly thicker PMs than diet-fed larvae. Moreover, mean PM width was inversely related to both the proportion of larvae with lacZ signaling at 18 h post-inoculation and the final percentage mortality from virus. Thus, feeding on foliage altered PM structure, and these foliage-mediated changes reduced baculoviral efficacy. These data indicate that the PM is an important factor determining the success of an ingested pathogen in foliage-fed lepidopteran larvae.     

Disintegration of the peritrophic membrane of silkworm larvae due to spindles of an entomopoxvirus

Mode of action by which entomopoxvirus (EPV) spindles enhance nucleopolyhedrovirus (NPV) infection remains unclear. Spindles of Anomala cuprea entomopoxvirus (AcEPV), a coleoptran EPV, are known to enhance Bombyx mori NPV (BmNPV) infection in silkworm larvae. AcEPV spindles were orally administered to silkworm larvae with or without BmNPV polyhedra, and the peritrophic membranes (PMs) were observed using a binocular microscope. Soon after the larvae's access to spindles with or without the polyhedra had been terminated, some PMs disappeared wholly and some were observed in partial form. Some of the partial PMs observed were very fragile. The disintegration of the PM due to spindles also was observed by the histological sectioning of the midgut. However, a day after the larvae had terminated their access to the spindles, the PM regenerated partially or wholly. In contrast, the administration of AcEPV spheroids caused neither the disintegration of PMs nor the enhancement of BmNPV infection in silkworm larvae. These findings strongly suggest that the enhancement of NPV infection occurs due to that a greater number of NPV virions reaching the microvilli of midgut susceptible to NPV, since spindles lead to the disintegration of the PM as a barrier against NPV virions.     

春季城区道路不同绿地配置模式对大气颗粒物的削减作用

研究城市道路不同绿地类型对大气颗粒物的吸附削减作用,是提高城市绿地大气污染治理功能绿地配置模式优化的重要基础。以位于北京市海淀区的3条典型主干道道路为对象,选取乔木、灌木、草本、乔-灌、乔-草、乔-灌-草6种典型绿地配置模式,在大气颗粒物污染严重以及城市植被发芽、开花、展叶完成的春季(3月中旬至4月上旬),采用Dustmate便携式颗粒物采样器和NK4500手持自动气象仪分1.5m和3m两个高度同步测定距污染源不同位置的大气颗粒物浓度与小气候因子,分析不同绿地配置模式对颗粒物削减能力的差异及其主要影响因素。研究结果表明:复合配置模式比单一配置模式下空气颗粒物浓度稳定程度高,其主要受风速与空气相对湿度的影响;大气颗粒物粒径越大绿地对其削减作用越强;地表覆盖程度是影响不同绿地配置模式对大气颗粒物垂直削减的关键因素,地表覆盖越好垂直削减效果越好,且垂直削减率与温度成正相关关系;草本、灌木对大气颗粒物的垂直削减作用比其他4种配置模式更好;由于受植被郁闭度、疏透度以及配置种类的综合影响,乔-草、灌木绿地配置对大气颗粒物的水平削减作用比其他4种模式更好。     

Polysaccharide compositions of intervessel pit membranes contribute to Pierce's disease resistance of grapevines

Symptom development of Pierce's disease (PD) in grapevine (Vitis vinifera) depends largely on the ability of the bacterium Xylella fastidiosa to use cell wall-degrading enzymes (CWDEs) to break up intervessel pit membranes (PMs) and spread through the vessel system. In this study, an immunohistochemical technique was developed to analyze pectic and hemicellulosic polysaccharides of intervessel PMs. Our results indicate that PMs of grapevine genotypes with different PD resistance differed in the composition and structure of homogalacturonans (HGs) and xyloglucans (XyGs), the potential targets of the pathogen's CWDEs. The PMs of PD-resistant grapevine genotypes lacked fucosylated XyGs and weakly methyl-esterified HGs (ME-HGs), and contained a small amount of heavily ME-HGs. In contrast, PMs of PD-susceptible genotypes all had substantial amounts of fucosylated XyGs and weakly ME-HGs, but lacked heavily ME-HGs. The intervessel PM integrity and the pathogen's distribution in Xylella-infected grapevines also showed differences among the genotypes. In pathogen-inoculated, PD-resistant genotypes PM integrity was well maintained and Xylella cells were only found close to the inoculation site. However, in inoculated PD-susceptible genotypes, PMs in the vessels associated with bacteria lost their integrity and the systemic presence of the X. fastidiosa pathogen was confirmed. Our analysis also provided a relatively clear understanding of the process by which intervessel PMs are degraded. All of these observations support the conclusion that weakly ME-HGs and fucosylated XyGs are substrates of the pathogen's CWDEs and their presence in or absence from PMs may contribute to grapevine's PD susceptibility.