植物保护遗传学研究进展

保护遗传学是过用遗传学的原理和研究手段,以生物多样性尤其是遗传多样性的研究和保护为核心的一门新兴学科,近几十年来,遗传学研究在生物多样性保护的理论和实践中发挥着越来越重要的作用。本文简要回顾了保护遗传学的发展历史,研究方向和涉及的概念,着重介绍了植物保护遗传学研究所取得的一些进展,包括植物系统发育重建和保护单元的确定,遗传多样性与物种和群体适应性之间的关系,群体遗传结构与保护策略的制定以及植物遗传资源的鉴定和利用等方面的内容,并强调保护遗传学研究是未来生物多样性和保护生物学研究中一个亟待加强的研究领域。     

生物多样性国际研究态势分析

生物多样性研究是综合性和高度交叉性的跨学科研究领域,是1997年底Science周刊上预测的1998年及近期的6个重大科学热点之一。检索1986—2008年间SCIE文献数据库中关于生物多样性的研究论文(article,proceedings paper和review),利用Thomson Data Analyzer(TDA)分析工具和Aureka分析平台进行数据挖掘。分析表明,该研究涉及多个学科领域,近年来在生态学领域的论文数量增加最多,而生物多样性保护、进化生物学、生物化学与分子生物学方面的论文增长速度较快。生物多样性研究越来越重视全球变化和人类社会对生物多样性的影响,DNA技术和基因工程等先进技术在生物多样性研究和保护中的作用也更加突出。     

保护生物学一新分支学科——保护遗传学

研究人类对生物多样性的影响以及防止物种灭绝是保护生物学的两个主要目的。随着环境日益恶化、分子遗传学的迅速发展以及保护生物学和分子遗传学的不为民相互渗透,和产生了一全新的分支学科－－保护遗传学。保护遗传学是保护生物学研究中的一个核心部分,主要研究濒危物种的遗传多样性和保护物种的进化潜力。目前保护遗传学已成为国际上的一个研究热点,但在我国才刚刚起步,为此,本文就保护,遗传学的产生和发展及其研究内容和意义作一简要介绍,以推动我国在该方面的研究。     

景观遗传学：概念与方法

全球变化下的物种栖息地丧失和破碎化给生物多样性保护带来了新的问题和挑战,生物多样性保护必须由单纯的物种保护上升到栖息地景观的保护。景观遗传学是定量确定栖息地景观特征对种群遗传结构影响的一门交叉学科,在生物保护及自然保护区管理方面有巨大的潜力。从生物多样性保护的角度评述了景观结构与遗传多样性的关系,介绍了景观遗传学的基本概念,研究尺度和方法,并对景观遗传学当前的研究焦点及面临的挑战做了总结。     

植物保护遗传学

从遗传多样性、系统发育和地理系统发育角度对当前保护遗传学在植物保护中的作用进行了探讨。在植物保护过程中,要考虑多群遗传多样性的大小,在就地和迁地保护的过程要减少近交和远交衰退影响,并可利用遗传标记为提供关于种群大小、基因流动等方面的信息。系统发育和地理系统发育的研究在于了解物种进化的历史,以确定物种保护单元。同时结合两个具体生态学问题（生境片段化和外来种）对当前植物保护遗传学的研究进行了介绍,揭示了保护遗传学在植物保护上重要作用和不可取代性,为今后研究提供参考。     

Species,Habitats, Society: An Evaluation of Research Supporting EU's Natura 2000 Network

The Natura 2000 network is regarded as one of the conservation success stories in the global effort to protect biodiversity. However, significant challenges remain in Natura 2000 implementation, owing to its rapid expansion, and lack of a coherent vision for its future. Scientific research is critical for identifying conservation priorities, setting management goals, and reconciling biodiversity protection and society in the complex political European landscape. Thus, there is an urgent need for a comprehensive evaluation of published Natura 2000 research to highlight prevalent research themes, disciplinary approaches, and spatial entities. We conducted a systematic review of 572 scientific articles and conference proceedings focused on Natura 2000 research, published between 1996 and 2014. We grouped these articles into ‘ecological’ and ‘social and policy’ categories. Using a novel application of network analysis of article keywords, we found that Natura 2000 research forms a cohesive small-world network, owing to the emphasis on ecological research (79% of studies, with a strong focus on spatial conservation planning), and the underrepresentation of studies addressing ‘social and policy’ issues (typically focused on environmental impact assessment, multi-level governance, agri-environment policy, and ecosystem services valuation). ‘Ecological’ and ‘social and policy’ research shared only general concepts (e.g., Natura 2000, Habitats Directive) suggesting a disconnection between these disciplines. The UK and the Mediterranean basin countries dominated Natura 2000 research, and there was a weak correlation between number of studies and proportion of national territory protected. Approximately 40% of ‘social and policy’ research and 26% of ‘ecological’ studies highlighted negative implications of Natura 2000, while 21% of studies found positive social and biodiversity effects. We emphasize the need for designing inter- and transdisciplinary research in order to promote a social-ecological understanding of Natura 2000, and advance EU conservation policies.     

Contribution of genetics to ecological restoration

Ecological restoration of degraded ecosystems has emerged as a critical tool in the fight to reverse and ameliorate the current loss of biodiversity and ecosystem services. Approaches derived from different genetic disciplines are extending the theoretical and applied frameworks on which ecological restoration is based. We performed a search of scientific articles and identified 160 articles that employed a genetic approach within a restoration context to shed light on the links between genetics and restoration. These articles were then classified on whether they examined association between genetics and fitness or the application of genetics in demographic studies, and on the way the studies informed restoration practice. Although genetic research in restoration is rapidly growing, we found that studies could make better use of the extensive toolbox developed by applied fields in genetics. Overall, 41% of reviewed studies used genetic information to evaluate or monitor restoration, and 59% provided genetic information to guide prerestoration decision‐making processes. Reviewed studies suggest that restoration practitioners often overlook the importance of including genetic aspects within their restoration goals. Even though there is a genetic basis influencing the provision of ecosystem services, few studies explored this relationship. We provide a view of research gaps, future directions and challenges in the genetics of restoration.     

植物景观遗传学研究进展

植物景观遗传学是新兴的景观遗传学交叉学科的一个重要研究方向。目前植物景观遗传学的研究虽落后于动物,但其在生物多样性保护方面具有的巨大潜力不可忽视。从景观特征对遗传结构、环境因素对适应性遗传变异影响两个方面,系统综述了近十年来国际上植物景观遗传学的研究焦点和研究进展,比较了植物景观遗传学与动物景观遗传学研究在研究设计和研究方法上的异同,并基于将来植物景观遗传学由对空间遗传结构的描述发展为对景观遗传效应的量化分析及预测的发展框架,具体针对目前景观特征与遗传结构研究设计的系统性差、遗传结构与景观格局在时间上的误配、适应性位点与环境变量的模糊匹配、中性遗传变异与适应性遗传变异研究的分隔、景观与遗传关系分析方法的局限等五个方面提出了研究对策。     

分子标记在濒危物种保护中的应用

分子标记可揭示种群遗传和进化信息, 为制定濒危物种保护措施、指导恢复实践提供重要依据。本文主要介绍了分子标记在濒危物种保护过程不同环节中的应用, 包括: (1)正确识别保护单元, 如排除隐存种和杂交种的影响; (2)确定优先保护单元, 包括优先保护区域、优先保护物种、优先保护种群等; (3)指导迁地保护; (4)对保护工作的动态监测和评估。文章最后探讨了分子标记应用于保护的发展方向, 如开展长期的种群遗传组成监测、切实应用于保护管理实践、将基因组学等遗传信息用于全球变化背景下保护策略的制定等, 期望为分子标记技术在生物多样性保护的研究和实践中提供参考。     

An essay on the necessity and feasibility of conservation genomics

The basic premise of conservation genetics is that small populations may be genetically threatened. The two steps leading to this premise are: (1) due to prominent influence of random genetic drift and inbreeding allelic and genotypic diversity in small populations is expected to be low, and (2) low allelic diversity and high homozygosity are expected to lead to immediate fitness decreases (inbreeding depression) and a compromised potential for evolutionary adaptation. Conservation genetic research has been strongly stimulated by the application of neutral molecular markers like microsatellites and AFLPs. In general these marker studies have provided evidence for step 1. It is less evident how these markers may provide evidence for step 2. In this essay we argue that, in order to get detailed insight in step 2, adopting a conservation genomic approach, in which conservation genetics will use approaches from ecological and evolutionary functional genomics (ecogenomics), is both necessary and feasible. Conservation genomics is necessary for studying functional genomic variation as function of drift and inbreeding, for studying the mechanisms that relate low genetic variation to low fitness, for integrating environmental and genetic approaches to conservation biology, and for developing modern, fast monitoring tools. The rapid technical and financial developments in genomics currently make conservation genomics feasible, and will improve feasibility in the very near future even further. We therefore argue that conservation genomics personifies part of the near future of conservation genetics.     

基于景观遗传学的滇金丝猴栖息地连接度分析

结合景观遗传学,应用最小费用距离模型对物种栖息地进行连接度分析,能够为生物多样性保护和自然保护区管理提供更加真实准确及可实践操作的指导。选取滇金丝猴这一珍稀濒危物种,结合景观遗传学,应用最小费用距离模型对其栖息地进行了连接度和潜在扩散廊道分析。并且通过连接度的分析和制图绘制出了更为准确的种群间潜在扩散廊道,确定了受人工障碍影响的廊道及敏感区域。结果表明,研究区内的5个亚群中,仅S3亚群内的5个猴群保持着较好的连接度,总体来说,各亚群内的连接度相对于各亚群间连接度保持的较好。除S3亚群中猴群间的潜在扩散廊道较为理想外,其余种群间的潜在扩散廊道均受人工斑块的影响,多数廊道被人工障碍阻断,或面临即将被阻断的情况,对于滇金丝猴的扩散交流影响较大。敏感区域多集中在中南部的3个亚群间,这些敏感区域应作为景观恢复及保护区规划的重要优先区域。     

自然保护地生物多样性保护研究进展

建立自然保护地是保护生物多样性最为重要的措施之一。总体来看, 自然保护地生物多样性保护研究主要围绕关键生态系统以及珍稀濒危物种等保护对象的状态以及变化两个层面进行, 并重点关注自然保护地数量与面积、保护了多少重要生态系统和物种、能否有效保护生物多样性等一系列科学问题。然而, 在自然保护地生物多样性保护研究方面, 还缺少针对上述研究领域的系统性综述。为此, 本文系统梳理了自然保护地空间布局及其与生物多样性分布的关系、自然保护地生物多样性变化及其保护成效等近20年来相关领域的研究进展。自然保护地的空间布局以及与生物多样性分布的关系主要围绕自然保护地与生物多样性在某一阶段的状态开展研究, 致力于探究自然保护地“保护多少” “代表性如何” “在哪儿保护”等一系列关键科学问题。同时, 自然保护地内的生物多样性会随着气候变化、人类活动以及自身演替等发生时空动态变化, 基于自然保护地生物多样性变化分析, 各国学者在全球尺度、国家尺度和单个自然保护地进行了大量的保护成效评估研究, 并逐渐发展出了自然保护地内外配对分析方法以提升保护成效评估的精度, 进而识别出不同自然保护地的主要影响因素。在此基础上, 本文进一步对自然保护地生物多样性保护研究提出了展望, 主要包括: (1)综合考虑自然保护地生物多样性状态和变化; (2)开展多目标协同的自然保护地空间优化布局; (3)强化自然保护地主要保护对象的识别、调查与监测; (4)提升自然保护地的质量和连通性; (5)探究自然保护地管理措施与保护成效的关联机制。本文可为“2020年后全球生物多样性框架”的制定与实施特别是在自然保护地体系建设与优化方面提供参考与借鉴。     

基因组学技术在生物多样性保护研究中的应用

在分子生物学、细胞生物学、微生物学、遗传学等学科的推动下, 生物多样性研究从仅关注宏观表型的博物学, 迅速演化为涵盖生态系统、物种和遗传多样性等多个维度的综合性生命科学。组学技术, 尤其是DNA测序技术的更新和发展, 使获取DNA序列所需的成本大幅下降, 促进了近年来其在生物多样性研究中取得的一系列令人瞩目成就。本文将从物种水平的遗传多样性和群落水平的物种多样性两个层面总结和介绍与DNA相关的组学技术在生物多样性研究中的一些创新和应用。其中, 物种水平主要是总结单一个体的基因组和单物种多个体在时空多个维度上的群体遗传研究; 而群落水平的物种多样性层面主要总结现有的分子鉴定技术(metabarcoding, eDNA, iDNA等), 以及上述新技术在群落多样性评估、旗舰保护物种监测以及物种间相互作用关系等研究中的应用。     

Relative importance of tree genetics and microhabitat on macrofungal biodiversity on coarse woody debris

Understanding the contribution of genetic variation within foundation species to community-level pattern and diversity represents the cornerstone of the developing field of community genetics. We assessed the relative importance of intraspecific genetic variation, spatial variation within a forest and microhabitat variation on a macrofungal decay community developing on logs of the Australian forest tree, Eucalyptus globulus. Uniform logs were harvested from trees from eight geographic races of E. globulus growing in a 15-year-old genetic trial. Logs were placed as designed grids within a native E. globulus forest and after 3 years of natural colonisation the presence of 62 macrofungal taxa were recorded from eight microhabitats on each log. The key factor found to drive macrofungal distribution and biodiversity on structurally uniform coarse woody debris was log-microhabitat, explaining 42% of the total variation in richness. Differences between log-microhabitats appeared to be due to variation in aspect, substrate (bark vs wood) and area/time of exposure to colonisation. This findings demonstrates the importance of considering fine-scale (within substrate) variation in the conservation and management of macrofungal biodiversity, an area that has received little previous attention. While a number of recent studies have demonstrated that the genetics of foundation tree species can influence dependent communities, this was not found to be the case for the early log decay community associated with E. globulus. Despite genetic variation in wood and bark properties existing within this species, there was no significant effect of tree genetics on macrofungal community richness or composition. This finding highlights the variation that may exist among guilds of organisms in their response to genetic variation within foundation species, an important consideration in a promising new area of research.     

Effects of forest plantations on the genetic composition of conspecific native Aleppo pine populations

Afforestation is a common and widespread management practice throughout the world, yet its implications for the genetic diversity of native populations are still poorly understood. We examined the effect of Aleppo pine (Pinus halepensis) plantations on the genetic composition of nearby conspecific native populations. We focused on two native populations in Israel with different levels of isolation from the surrounding plantations and compared the genetic diversity of naturally established young trees within the native populations with that of local native adults, using nine nuclear microsatellite markers. We found that the genetic composition of the recruits was significantly different from that of local adults in both populations, with allelic frequency changes between generations that could not be ascribed to random drift, but rather to substantial gene flow from the surrounding planted Aleppo pine populations. The more isolated population experienced a lower gene-flow level (22%) than the less isolated population (49%). The genetic divergence between native populations at the adult-tree stage (F(st) = 0.32) was more than twice as high as that of the young trees naturally established around native adults (F(st) = 0.15). Our findings provide evidence for a rapid genetic homogenization process of native populations following the massive planting efforts in the last decades. These findings have important implications for forest management and nature conservation and constitute a warning sign for the risk of translocation of biota for local biodiversity.     

热带与亚热带森林分子生态学研究

当前 ,植物学家会有更多的方法和手段来从事植物学的研究 ,如分子生物学方法、遗传学的方法、植物生理学的方法、分类学方法等。其中分子生物学方法直接研究植物遗传物质ＤＮＡ ,从根本上揭示了生物体内涵 ,有着极其重要的作用[4 7] 。因此用分子生物学手段进行生态学的研究有着广泛应用前景和重要意义。分子生物学方法既节省时间和资金 ,又比传统方法解决了更多的问题[6 1] 。例如在动物学研究中 ,用少许的毛发就可以分析高山土拨鼠 (ＭａｒｍｏｔａｍａｒｍｏｔａＳｃｉｕｒｉｄａｅ)的交配系统[30 ] ;粪便所带的肠道粘膜细胞ＤＮＡ也可以…     

Bridging molecular genetics and participatory research: how access and benefit‐sharing stimulate interdisciplinary research for tropical biology and conservation

Molecular genetics research can benefit efforts to conserve the genetic diversity of tropical plant species. Clear and efficient procedures are needed to access DNA samples, while respecting tropical countries’ and local communities’ rights on genetic resource usage. The Nagoya Protocol on Access and Benefit‐Sharing, which took effect in 2014, provides an opportunity to establish such procedures. However, scientists are concerned that its emphasis on monetary gains restricts research focused on scientific, societal, and environmental benefits. Despite much political and scientific debate, few concrete cases have demonstrated the practical functioning of the Nagoya Protocol. This paper describes the first application of the Protocol in Guatemala, where it was used to grant permission to a non‐commercial study on gene flow in mahogany (Swietenia macrophylla King) populations in the Maya Biosphere Reserve of Petén. On the basis of this study, we discuss five strategies to enhance the application of molecular genetics to conservation biology under the Nagoya Protocol: (1) generate short and standardized procedures; (2) enable science communication; (3) cultivate a common understanding between users, providers, and potential beneficiaries; (4) involve local research and practitioner organizations; and (5) integrate participatory research. Positive societal views on the application of molecular genetics to conservation biology generate further support for work in this discipline and promote adoption of research results for the conservation of genetic diversity of tropical plant species.     

Genetic analysis of populations of threatened snake species using RAPD markers

Snakes are a particularly threatened vertebrate taxon, with distributions of many species and populations becoming increasingly fragmented. At present, little is known about the degree of genetic differentiation that exists between isolated populations even though such information may be critical to their survival and conservation. As an example of how recently developed RAPD genetic markers can be used in conservation genetics, we present preliminary results from a study which used these DNA-based markers to assess population divergence in two threatened Canadian snakes, the black rat snake ( Elaphe o. obsoleta ) and the eastern massasauga rattlesnake ( Sistrurus c. catenatus ). We present information on the levels of variation and reliability of amplification for fragments generated from five primers. We then use a recently developed analytical technique to estimate levels of nucleotide diversity within populations and sequence divergence between populations. Our results show that intrapopulation levels of divergence as estimated by the methods of Clark & Lanigan ( Molecular Biology and Evolution 1993, 10 , 1096–1111) approximate those found for mtDNA in vertebrates and that diversity between snake populations is small and non-significant when tested using randomization procedures. Thus, our study provides an example of how RAPDs can be applied to conservation genetic studies of vertebrates and suggest that the snake populations we examined have only recently become isolated and maybe considered genetically equivalent from a conservation perspective, although this conclusion needs to be confirmed with other DNA-based markers.     

亚热带森林生物多样性与生态系统功能实验研究基地(BEF-China)研究进展

生物多样性与生态系统功能的关系(BEF)及其内在机制是当前生物多样性研究领域的热点问题。长期以来,以草地生态系统为主的BEF研究积累了大量研究成果,而基于森林生态系统的相关研究则相对较少。亚热带森林生物多样性与生态系统功能实验研究基地(BEF-China)是目前包含树种最多、涉及多样性水平最高的大型森林控制实验样地。该文总结了基于BEF-China平台的研究进展,特别是生物多样性对生态系统生产力、养分循环以及多营养级相互作用关系等方面的影响,并提出了未来BEF-China的研究应注重高通量测序和遥感等新兴技术的应用,在生物多样性的多维度、生态系统的多种组分与多种功能以及BEF研究的多种尺度等交叉方向上持续开展深入研究。针对BEF-China研究成果的梳理有助于理解驱动亚热带森林生物多样性与生态系统功能关系的内在机理,为生物多样性保护和生态修复提供科学依据。