British Bryological Society Expedition to Mulanje Mountain,Malawi 1. Background,itinerary and procedures

Abstract

In June 1991 a nine-man British Bryological Society Expedition collected bryophytes and made ecological observations in many parts of Mulanje Mountain, Malawi. Mulanje Mountain is an isolated member of the Afro-montane archepelago where the rich and distinctive ecosystem is under threat from a range of human activities. Over 4500 specimens were collected and it is clear that they will add many species to the known bryophyte flora of Malawi, as well as providing phytogeographical and ecological data and indicating priority sites for conservation. The present paper, the first in a series reporting the work of the Expedition, describes the objectives, itinerary, logistic arrangements and collecting procedures.     

British Bryological Society Expedition to Mulanje Mountain,Malawi 3. Erpodiaceae (Musci)

Abstract

Four members of the moss family Erpodiaceae, Aulacopilum trichophyllum, Erpodium beccarii, E. coronatum and E. grossirete, collected during the 1991 British Bryological Society expedition to Mulanje Mountain, are recorded as new for Malawi.     

Genetic structure of mosses Pleurozium schreberi (Willd. ex Brid.) Mitt. and Racomitrium lanuginosum (Hedw.) Brid. along altitude gradients in Hokkaido,Japan

Abstract

The families Pterigynandraceae and Rigodiaceae are reviewed for Africa with reference to the collections made by the BBS Expedition to Mt Mulanje, Malawi in 1991. The single African species of Rigodium (Rigodiaceae) is reported to be quite frequent on Mt Mulanje, and three of the four species of Trachyphyllum (Pterigynandraceae) found in Africa (T. gastrodes, T. dusenii and T. inflexum) are reported, the latter two for the first time from Malawi. On present limited evidence, Malawi seems to be a centre of diversity of the genus.     

A facility and community-based assessment of scabies in rural Malawi

BackgroundScabies is a neglected tropical disease of the skin, causing severe itching, stigmatizing skin lesions and systemic complications. Since 2015, the DerMalawi project provide an integrated skin diseases clinics and Tele-dermatology care in Malawi. Clinic based data suggested a progressive increase in scabies cases observed. To better identify and treat individuals with scabies in the region, we shifted from a clinic-based model to a community based outreach programme.Methodology/Principal findingsFrom May 2015, DerMalawi project provide integrated skin diseases and Tele-dermatological care in the Nkhotakota and Salima health districts in Malawi. Demographic and clinical data of all patients personally attended are recorded. Due to a progressive increase in the number of cases of scabies the project shifted to a community-based outreach programme. For the community outreach activities, we conducted three visits between 2018 to 2019 and undertook screening in schools and villages of Alinafe Hospital catchment area. Treatment was offered for all the cases and school or household contacts. Scabies increased from 2.9% to 39.2% of all cases seen by the DerMalawi project at clinics between 2015 to 2018. During the community-based activities approximately 50% of the population was assessed in each of three visits. The prevalence of scabies was similar in the first two rounds, 15.4% (2392) at the first visit and 17.2% at the second visit. The prevalence of scabies appeared to be lower (2.4%) at the third visit. The prevalence of impetigo appeared unchanged and was 6.7% at the first visit and 5.2% at the final visit.Conclusions/SignificancePrevalence of scabies in our setting was very high suggesting that scabies is a major public health problem in parts of Malawi. Further work is required to more accurately assess the burden of disease and develop appropriate public health strategies for its control.     

British Bryological Society Expedition to Mulanje Mountain,Malawi. 17 Sematophyllaceae (Bryopsida): Part 1

Abstract

The family Sematophyllaceae is a difficult family to treat in Africa because of the large number of species described without any subsequent revision or monography and, despite the many collections mentioned in this paper, only two species had previously been identified from Malawi. A total of four species in four genera (Gammiella, Mρacrohymenium, Radulina and Wijkia) are recorded in this paper, all but one new to Malawi. The two remaining genera (Sematophyllum and Trichosteleum) present additional difficulties of identification, and will be dealt with separately.     

Schistosomiasis transmission in Lake Malawi

Schistosomiasis (bilharziasis) transmission due to Schistosoma haematobium has for many years been known to occur along protected shorelines in Lake Malawi, but the recent finding that transmission also can also occur along open shorelines with sandy sediment has had a detrimental effect on tourism to Lake Malawi. The present paper shows that transmission, as evidenced from presence of intermediate hosts, along open shorelines is occurring in the southern part of the Lake. Relatively simple precautions can be taken to ensure minimal risk of attracting schistosome infection, and the schistosomiasis risk should not deter people from visiting and diving in Lake Malawi.     

Identification of Cichlid Fishes from Lake Malawi Using Computer Vision

Background

The explosively radiating evolution of cichlid fishes of Lake Malawi has yielded an amazing number of haplochromine species estimated as many as 500 to 800 with a surprising degree of diversity not only in color and stripe pattern but also in the shape of jaw and body among them. As these morphological diversities have been a central subject of adaptive speciation and taxonomic classification, such high diversity could serve as a foundation for automation of species identification of cichlids.

Methodology/Principal Finding

Here we demonstrate a method for automatic classification of the Lake Malawi cichlids based on computer vision and geometric morphometrics. For this end we developed a pipeline that integrates multiple image processing tools to automatically extract informative features of color and stripe patterns from a large set of photographic images of wild cichlids. The extracted information was evaluated by statistical classifiers Support Vector Machine and Random Forests. Both classifiers performed better when body shape information was added to the feature of color and stripe. Besides the coloration and stripe pattern, body shape variables boosted the accuracy of classification by about 10%. The programs were able to classify 594 live cichlid individuals belonging to 12 different classes (species and sexes) with an average accuracy of 78%, contrasting to a mere 42% success rate by human eyes. The variables that contributed most to the accuracy were body height and the hue of the most frequent color.

Conclusions

Computer vision showed a notable performance in extracting information from the color and stripe patterns of Lake Malawi cichlids although the information was not enough for errorless species identification. Our results indicate that there appears an unavoidable difficulty in automatic species identification of cichlid fishes, which may arise from short divergence times and gene flow between closely related species.     

Estimating HIV pre-exposure prophylaxis need and impact in Malawi,Mozambique and Zambia: A geospatial and risk-based analysis

BackgroundPre-exposure prophylaxis (PrEP), a WHO-recommended HIV prevention method for people at high risk for acquiring HIV, is being increasingly implemented in many countries. Setting programmatic targets, particularly in generalised epidemics, could incorporate estimates of the size of the population likely to be eligible for PrEP using incidence-based thresholds. We estimated the proportion of men and women who would be eligible for PrEP and the number of HIV infections that could be averted in Malawi, Mozambique, and Zambia using prioritisation based on age, sex, geography, and markers of risk.Methods and findingsWe analysed the latest nationally representative Demographic and Health Surveys (DHS) of Malawi, Mozambique, and Zambia to determine the proportion of adults who report behavioural markers of risk for HIV infection. We used prevalence ratios (PRs) to quantify the association of these factors with HIV status. Using a multiplier method, we combined these proportions with the number of new HIV infections by district, derived from district-level modelled HIV estimates. Based on these numbers, different scenarios were analysed for the minimum number of person-years on PrEP needed to prevent 1 HIV infection (NNP).An estimated total of 38,000, 108,000, and 46,000 new infections occurred in Malawi, Mozambique, and Zambia in 2016, corresponding with incidence rates of 0.43, 0.63, and 0.57 per 100 person-years. In these countries, 9%–20% of new infections occurred among people with a sexually transmitted infection (STI) in the past 12 months and 40%–42% among people with either an STI or a non-regular sexual partner (NP) in the past 12 months (STINP). The models estimate that around 50% of new infections occurred in districts with incidence rates ≥1.0% in Mozambique and Zambia and ≥0.5% in Malawi. In Malawi, Mozambique, and Zambia, 35.1%, 21.9%, and 12.5% of the population live in these high-incidence districts. In the most parsimonious scenario, if women aged 15–34 years and men 20–34 years with an STI in the past 12 months living in high-incidence districts were to take PrEP, it would take a minimum of 65.8 person-years on PrEP to avert 1 HIV infection per year in Malawi, 35.2 in Mozambique, and 16.4 in Zambia. Our findings suggest that 3,300, 5,200, and 1,700 new infections could be averted per year in the 3 countries, respectively. Limitations of our study are that these values are based on modelled estimates of HIV incidence and self-reported behavioural risk factors from national surveys.ConclusionsA large proportion of new HIV infections in these 3 African countries were estimated to occur among people who had either an STI or an NP in the past year, providing a straightforward means to set PrEP targets. Greater prioritisation of PrEP by district, sex, age, and behavioural risk factors resulted in lower NNPs thereby increasing PrEP cost-effectiveness, but also diminished the overall impact on reducing new infections

Dominik Stelzle and co-workers estimate impact of antiretroviral pre-exposure prophylaxis use on HIV infections in 3 African countries.     

Distribution of Lilian's Lovebirds in Malawi

Lilian's Lovebird Agapornis lilianae is regarded as a mopane Colophospermum mopane woodland specialist. Its global population is sparse and is spread along the Zambezi valley with little known about its current distribution and status. We explored the current distribution of Lilian's Lovebird in Malawi, and in particular focused on the distribution and habitat associations of the largest resident population in Liwonde National Park (LNP). Local birders and tourist guides provided distribution information from across Malawi. Transect walks were conducted to collect data in LNP. Five new atlas records are reported; three were within 40–56 km of the LNP population and two were over 150 km south and north of LNP, respectively. One of the sites is about 66 km from the Lilian's Lovebird population in Luangwa Valley, Zambia. New national records were evidence of the importance of seasonal movements to the species. Lilian's Lovebirds occurred throughout LNP with the highest abundance in the central section. Seasonal movements to areas outside the park were also recorded. A variety of vegetation types were used by the lovebirds, but the strongest habitat associations were with seasonally wet grasslands and not mopane woodlands as would be expected. Thus, conservation efforts should also include these other habitats.     

Migratory Birds in Malawi

Banda, H.M. 2000. Migratory Birds in Malawi. Ostrich 71 (1 & 2): 183.

Some literature review and brief field observations on migratory birds were carried out from November 1987 to October 1992. Migratory birds and their natural habitats in Malawi are under threat. These threats include deforestation, uncontrolled bush fire, poorly planned development, poor habitat management, lack of knowledge and understanding of the importance of migratory birds and the natural habitats by the public.

This paper discusses the threats and their possible solutions, which would improve management of the remaining migratory bird habitats and public awareness of the importance of migratory birds and their habitats.     

Checklist of naturally occurring entomopathogenic microbes and nematodes in New Zealand

Abstract

A checklist of records of naturally occurring insect-pathogenic microbes and nematodes in New Zealand is presented. All records are listed by pathogen group (fungi, bacteria, protozoa, viruses, rickettsia, and nematodes) and also by host insect order and species. Each record is referenced to the original author, and important subsequent references have been included, where appropriate. The checklist should be updated periodically to assist researchers.     

Findings from a rapid assessment of avoidable blindness (RAAB) in Southern Malawi

Background

Data on prevalence and causes of avoidable blindness in Malawi are not readily available. The purpose of this study was to determine the prevalence and causes of blindness in persons aged 50 and above in southern Malawi to plan eye care services for the community.

Methodology

A population-based survey was conducted in 7 districts in southern Malawi. Villages were selected by probability proportionate to size within each district. Clusters were further subdivided into segments. A predetermined number of segments were selected randomly in each cluster. The survey team moved from house to house in each segment until they had examined 50 people over the age of 50. Examination consisted of visual acuity measurement with tumbling “E” chart and ocular examination by an ophthalmologist. Participants were categorized by visual acuity. Those who were visually impaired (VA<6/18 in the better eye with available correction) were assigned a main cause of visual loss. Further information was sought from anyone who had received cataract surgery.

Results

A total number of 3,583 persons aged 50 and above were sampled; among these 3,430 (95.7%) were examined. The prevalence of blindness (presenting visual acuity <3/60 in the better eye) among persons aged 50 and above was 3.3% (95% CI 2.5–4.1). Cataract was the most common cause of blindness contributing to 48.2% of all cases, followed by glaucoma (15.8%) and cornea scarring (12.3%). The cataract surgical coverage in blind persons was 44.6%.

Conclusion

The prevalence of blindness and visual impairment in persons aged 50 and above was lower than the WHO estimate for Malawi. The majority of the causes were avoidable, with cataract accounting for approximately half of all cases of blindness. The data suggests that expansion of eye care programs to address avoidable causes of blindness is necessary in this area of southern Malawi.     

The taxonomic status and distribution of Bushbabies in Malawi with emphasis on the significance of vocalizations

The debated identity of a small forest bushbaby in Malawi is resolved by a short-term field study of the animals’ behavior. Locomotor styles, calling patterns, and the structure of advertising calls confirm that the species is Galago zanzibaricusrather than G. demidoffor G. thomasi.A detailed comparison of acoustic structure between the Malawi animals and G. zanzibaricusin Kenya demonstrates a degree of between-population variation, although the calls remain conservative in those parameters expected to aid recognition of conspecifics. Distribution records extend the known geographical range of G. zanzibaricusover most of the northern half of Malawi. Further studies are required to link the animals from this region with either of the previously recognized subspecies: G. z. zanzibaricusfrom East Africa or G. z. grantifrom southern Malawi, Mozambique, and Zimbabwe.     

Genetic and morphological studies of Nothobranchius (Cyprinodontiformes) from Malawi with description of Nothobranchius wattersi sp. nov.

Molecular and morphological data were used to explore evolutionary differentiation among populations of Nothobranchius in the Lake Malawi–upper Shire River and the Lakes Chilwa–Chiuta drainage systems in Malawi. The aim of the study was to test the hypothesis that Nothobranchius of the Malawi–Shire system constitute a separate evolutionary group from Nothobranchius kirki. Mitochondrial and nuclear sequence data show a strongly supported phylogenetic split into two monophyletic groups separating the Lake Malawi basin fish from N. kirki. Unlike N. kirki, Lake Malawi–Shire fish do not deviate from neutrality and express an excess of rare haplotypes and mutations in terminal branches, characteristic of recently expanded populations. Further, the two groups significantly differ in morphology. Two body characters (dorsal‐fin base length and pre‐pelvic–pre‐anal distance) are significantly different between the two species in both sexes. Several other characters are significantly different in either male or female comparisons with respect to both standard and head lengths, and robust morphological differentiation is detected by multivariate analysis. The two groups are readily distinguished on the basis of male colouration, especially in scale centres and the caudal fin. On the basis of this differentiation at the molecular and morphological levels, in addition to colouration, the Lake Malawi–Shire fish are hereby formally recognized as constituting a new species, Nothobranchius wattersi. This distinction is in agreement with the geomorphologic and recent climatic history in the region.     

The artisanal fishery of Metangula,Lake Malawi/Niassa,East Africa

The artisanal fishery of Metangula, on the remote Mozambique coast of Lake Malawi/Niassa, was studied for four months during the rainy season from December 1998 to March 1999. Catch, catch composition and fishing effort were determined for the most important gear types. The different gears exploited different stocks of fish. Copadichromis spp. were caught mostly in deep-water seine (chirimila) nets and accounted for >50% of the total catch. Oreochromis spp. were the major catch in the beach seine fishery. Labeo mesops and Opsaridium microcephalus were the most important catches in gill nets. The catfishes Bathyclarias spp. and Bagrus meridionalis dominated the long line fishery. Since 1983 there has been a considerable increase in fishing effort. The number of beach seines, chirimila nets and long lines increased 2.8 times, 2.9 times and 2.5 times, respectively, and there was a fourfold increase in the number of gear owners and fishing assistants. Comparison with data for Chembe Village in Malawi indicates that the fish populations at Metangula are not yet as impacted as they are on the populous and accessible Malawi coast. Some constraints on the fishery include the lack of management and financial support, poor gear and infrastructure, and the lack of access to markets.     

Childhood Malaria Admission Rates to Four Hospitals in Malawi between 2000 and 2010

Introduction

The last few years have witnessed rapid scaling-up of key malaria interventions in several African countries following increases in development assistance. However, there is only limited country-specific information on the health impact of expanded coverage of these interventions.

Methods

Paediatric admission data were assembled from 4 hospitals in Malawi reflecting different malaria ecologies. Trends in monthly clinical malaria admissions between January 2000 and December 2010 were analysed using time-series models controlling for covariates related to climate and service use to establish whether changes in admissions can be related to expanded coverage of interventions aimed at reducing malaria infection.

Results

In 3 of 4 sites there was an increase in clinical malaria admission rates. Results from time series models indicate a significant month-to-month increase in the mean clinical malaria admission rates at two hospitals (trend P<0.05). At these hospitals clinical malaria admissions had increased from 2000 by 41% to 100%. Comparison of changes in malaria risk and ITN coverage appear to correspond to a lack of disease declines over the period. Changes in intervention coverage within hospital catchments showed minimal increases in ITN coverage from <6% across all sites in 2000 to maximum of 33% at one hospital site by 2010. Additionally, malaria transmission intensity remained unchanged between 2000–2010 across all sites.

Discussion

Despite modest increases in coverage of measures to reduce infection there has been minimal changes in paediatric clinical malaria cases in four hospitals in Malawi. Studies across Africa are increasingly showing a mixed set of impact results and it is important to assemble more data from more sites to understand the wider implications of malaria funding investment. We also caution that impact surveillance should continue in areas where intervention coverage is increasing with time, for example Malawi, as decline may become evident within a period when coverage reaches optimal levels.     

Neglected refugia of biodiversity: mountainous regions in Mozambique and Malawi yield two novel freshwater crab species (Potamonautidae: Potamonautes)

Phylogenetic relationships amongst the southern African freshwater crab fauna are reinvestigated following the recent collection of morphologically distinct Potamonautes specimens from remote mountainous regions in Malawi and Mozambique. Specimens were subjected to DNA sequencing of three mtDNA loci, cytochrome c oxidase subunit I (COI), 12S rRNA, and 16S rRNA and compared to the 14 described species from the region. Phylogenetic analysis using maximum parsimony and Bayesian inference revealed the presence of two novel evolutionary lineages. The phylogeny demonstrates that Potamonautes obesus (A. Milne‐Edwards, 1868) is sister to a morphologically distinct novel species from Mount Namuli in Mozambique. Two sympatric and genetically distinct species from Mount Mulanje, in Malawi (forms A and B) were recognized. Form B is sister to the large‐bodied South African riverine freshwater crabs and represents a novel lineage whereas the remaining species (form A) from Mulanje, in Malawi was sister to samples from Mounts Inago and Mabu, and in Mozambique was identified as Potamonautes choloensis (Chace, 1953). The two novel evolutionary lineages were genetically distinct and morphologically different from the described species in each of the respective regions. Two new freshwater crab species Potamonautes namuliensis sp. nov. and Potamonautes mulanjeensis sp. nov. , are described in the present study. The samples from Mount Mulanje in Malawi, and Mounts Mabu and Inago in Mozambique represent new distribution records for Potamonautes choloensis. © 2012 The Linnean Society of London, Zoological Journal of the Linnean Society, 2012, 164 , 498–509.     

Migratory behaviour shapes spatial genetic structure of cyprinid fishes within the Lake Malawi catchment

• Genetic differences among freshwater fish populations are dependent on life‐history characteristics of the species, including the range of adult dispersal and the extent of homing to natal breeding grounds. However, the effects of variation in such characteristics on population genetic connectivity are rarely studied comparatively among closely related species.
• We studied population genetic structure within three congeneric cyprinid species from the Lake Malawi catchment that differ substantially in life‐history traits and conservation status, using a combination of microsatellite and mitochondrial DNA markers. Mpasa (Opsaridium microlepis) is a large (70 cm total length) migratory species that spawns in rivers, but as an adult is exclusively known from the main lake body. Sanjika (Opsaridium microcephalum), is a medium size (30 cm total length) species that exists in lake breeding, river‐lake migratory and apparently landlocked populations. Dwarf sanjika (Opsaridium tweddleorum) is a small non‐migratory species (15 cm total length) that persists in small tributaries surrounding the main lake and adjoining rivers.
• The results revealed striking differences among the three species in spatial genetic structuring. The river‐lake migratory mpasa showed only weak yet significant population genetic structure within the main Lake Malawi catchment, suggesting that there is no strong natal homing. The habitat‐generalist sanjika showed only weak spatial genetic differentiation at microsatellite loci within the Lake Malawi catchment, but moderate structure in mitochondrial DNA, potentially reflecting male‐biased dispersal. The river‐restricted dwarf sanjika showed strong genetic structure in both microsatellite and mitochondrial DNA, suggesting strictly limited dispersal at both adult and juvenile stages.
• We conclude that contrasting migration life histories have resulted in dramatically different patterns of population genetic structure among these congeneric species. The observed patterns demonstrate how divergent life‐history evolution may strongly influence broader patterns of population genetic connectivity in freshwater fish, with consequences for management and conservation. Specifically the results suggesting gene flow among Lake Malawi populations of mpasa, an IUCN red‐listed ‘Endangered’ species endemic to the lake catchment, imply that conservation initiatives operating at both local and catchment scales are needed to reverse local population decline.

     

Old fossils–young species: evolutionary history of an endemic gastropod assemblage in Lake Malawi

Studies on environmental changes provide important insights into modes of speciation, into the (adaptive) reoccupation of ecological niches and into species turnover. Against this background, we here examine the history of the gastropod genus Lanistes in the African Rift Lake Malawi, guided by four general evolutionary scenarios, and compare it with patterns reported from other endemic Malawian rift taxa. Based on an integrated approach using a mitochondrial DNA phylogeny and a trait-specific molecular clock in combination with insights from the fossil record and palaeoenvironmental data, we demonstrate that the accumulation of extant molecular diversity in the endemic group did not start before approximately 600 000 years ago from a single lineage. Fossils of the genus from the Malawi Rift, however, are over one million years older. We argue that severe drops in the lake level of Lake Malawi in the Pleistocene offer a potential explanation for this pattern. Our results also challenge previously established phylogenetic relationships within the genus by revealing parallel evolution and providing evidence that the endemic Lanistes species are not restricted to the lake proper but are present throughout the Malawi Rift.