Climate Change Affects Carbon Allocation to the Soil in Shrublands

Climate change may affect ecosystem functioning through increased temperatures or changes in precipitation patterns. Temperature and water availability are important drivers for ecosystem processes such as photosynthesis, carbon translocation, and organic matter decomposition. These climate changes may affect the supply of carbon and energy to the soil microbial population and subsequently alter decomposition and mineralization, important ecosystem processes in carbon and nutrient cycling. In this study, carried out within the cross-European research project CLIMOOR, the effect of climate change, resulting from imposed manipulations, on carbon dynamics in shrubland ecosystems was examined. We performed a ¹⁴C-labeling experiment to probe changes in net carbon uptake and allocation to the roots and soil compartments as affected by a higher temperature during the year and a drought period in the growing season. Differences in climate, soil, and plant characteristics resulted in a gradient in the severity of the drought effects on net carbon uptake by plants with the impact being most severe in Spain, followed by Denmark, with the UK showing few negative effects at significance levels of p 0.10. Drought clearly reduced carbon flow from the roots to the soil compartments. The fraction of the ¹⁴C fixed by the plants and allocated into the soluble carbon fraction in the soil and to soil microbial biomass in Denmark and the UK decreased by more than 60%. The effects of warming were not significant, but, as with the drought treatment, a negative effect on carbon allocation to soil microbial biomass was found. The changes in carbon allocation to soil microbial biomass at the northern sites in this study indicate that soil microbial biomass is a sensitive, early indicator of drought- or temperature-initiated changes in these shrubland ecosystems. The reduced supply of substrate to the soil and the response of the soil microbial biomass may help to explain the observed acclimation of CO₂ exchange in other ecosystems.     

Decomposition and transfer of plant residue 14C between size and density fractions in soil

The aim of our study was to follow the transfer of ¹⁴C-labeled ryegrass between size and density fractions of soil organic matter in a sandy and a loam soil. Our hypotheses were a) that the applied ¹⁴C would be transferred from light and soluble fractions to intermediate and heavy macroorganic matter fractions (>150 m) and finally become stabilized in microaggregates (<150 m), and b) that the physical protection of ¹⁴C associated with microaggregates against decomposition would decrease with increasing saturation of the microaggregates with soil organic matter. Generally, the hypotheses were confirmed. Immediately after application most of the label was present in the soluble and light macroorganic matter fractions. Newly synthesized microbial biomass fed on the labeled components of the fractions. The amounts of ¹⁴C in the soluble and light macroorganic matter fractions decreased rapidly, while the amounts of ¹⁴C in the intermediate and heavy macroorganic matter fractions and in microaggregates remained more or less stable. At the end of the incubation most of the residual soil ¹⁴C was found in the microaggregates. In the sandy soil ¹⁴C was concentrated in the 20–150 m fraction, whereas in the loam a larger proportion was present in the <20 m fraction.The mineralization rates of ¹⁴C-labeled material were similar in the light intermediate and heavy fractions of macroorganic matter and in the microaggregates 0 and 180 days after the application of ¹⁴C-labeled ryegrass. In all fractions, ¹⁴C mineralized more rapidly than total C. The results indicate that considerable amounts of ¹⁴C must have transferred from the soluble and light macroorganic matter fractions and newly synthesized microbial biomass to the intermediate and heavy macroorganic matter fractions and the microaggregates, and that ¹⁴C was not yet physically protected against microbial degradation during the whole incubation period. The degree of physical protection of ¹⁴C against decomposition in the microaggregate fraction <20 m was negatively correlated with the degree of saturation of this particle size fraction with soil organic matter.     

Is growth of soil microorganisms in boreal forests limited by carbon or nitrogen availability?

To study whether the biomass of soil microorganisms in a boreal Pinus sylvestris-Vaccinium vitis-idaea forest was limited by the availability of carbon or nitrogen, we applied sucrose from sugar cane, a C₄ plant, to the organic mor-layer of the C₃–C dominated soil. We can distinguish between microbial mineralization of the added sucrose and respiration of endogenous carbon (root and microbial) by using the C₄-sucrose as a tracer, exploiting the difference in natural abundance of ¹³C between the added C₄-sucrose (¹³C –10.8) and the endogenous C₃–carbon (¹³C –26.6 ). In addition to sucrose, NH₄Cl (340 kg N ha^–1) was added factorially to the mor-layer. We followed the microbial activity for nine days after the treatments, by in situ sampling of CO₂ evolved from the soil and mass spectrometric analyses of ¹³C in the CO₂. We found that microbial biomass was limited by the availability of carbon, rather than nitrogen availability, since there was a 50% increase in soil respiration in situ between 1 h and 5 days after adding the sucrose. However, no further increase was observed unless nitrogen was also added. Analyses of the ¹³C ratios of the evolved CO₂ showed that increases in respiration observed between 1 h and 9 days after the additions could be accounted for by an increase in mineralization of the added C₄–C.     

Measurement of the microbial biomass in intact cores of soil

The fumigation/respiration technique was used to estimate the size of the soil microbial biomass. Sieving decreased the biomass in winter but increased it in summer; we suggest that this was a consequence of the different substrates available and the different microbial populations during the year. The flush in respiration following fumigation correlated significantly with the CO₂-C produced 10 days after fumigation (X), so that in the soils studied by us the biomass (B) can be calculated from Bk=0.673X–3.53, wherek is the fraction of fumigated organisms mineralized to CO₂, thus avoiding the need to measure CO₂ production from unfumigated cores.     

Organic matter contributed to soil by plant roots during the growth and decomposition of maize

Maize (Zea mays var. Caldera) plants were grown under sterile and not sterile conditions in soil in an atmosphere continuously enriched with ¹⁴CO₂ for 36 days. At harvest the above ground parts of the maize were cut off and the roots were separated from the soil by washing with water. The soil was dispersed using ultrasonics and separated into soluble clay silt and sand fraction. Roots were included in the coarse sand fraction. 25% of the total label present in the soil 5.5% of that in the soil-plant system, was water soluble. Very little label was present in the clay and silt fractions (5% in each) and most (65%) was in the sand fraction as root material.Rapid extraction of soil after the removal of roots without ultrasonic treatment released soluble matter which amounted to <0.5% of the total activity in the soil-plant system.Isolated roots steeped in water released about 18% of their activity. Much of the soluble fraction may therefore be root lysate.The soil and roots accounted for 22% of the total activity in the soil-plant system. Glucose accounted for 89% of the sugars in the soluble fraction of the soil.78% or more of the ¹⁴C present in glucose, arabinose and xylose constituents of the root-soil mixture occurred in the coarse and fine sand fractions, which also included root material. For mannose and galactose the value was 70% and for rhamnose, 50%.After reinoculation of the soil-root mixture and decomposition for 56 weeks, the water soluble material obtained on fractionation of the soil decreased to less than 1% of the total activity. A much greater proportion, 25%, was present in the clay fraction as a result of decomposition.     

Linking temperature sensitivity of soil organic matter decomposition to its molecular structure,accessibility, and microbial physiology

Temperature sensitivity of soil organic matter (SOM) decomposition may have a significant impact on global warming. Enzyme‐kinetic hypothesis suggests that decomposition of low‐quality substrate (recalcitrant molecular structure) requires higher activation energy and thus has greater temperature sensitivity than that of high‐quality, labile substrate. Supporting evidence, however, relies largely on indirect indices of substrate quality. Furthermore, the enzyme‐substrate reactions that drive decomposition may be regulated by microbial physiology and/or constrained by protective effects of soil mineral matrix. We thus tested the kinetic hypothesis by directly assessing the carbon molecular structure of low‐density fraction (LF) which represents readily accessible, mineral‐free SOM pool. Using five mineral soil samples of contrasting SOM concentrations, we conducted 30‐days incubations (15, 25, and 35 °C) to measure microbial respiration and quantified easily soluble C as well as microbial biomass C pools before and after the incubations. Carbon structure of LFs (<1.6 and 1.6–1.8 g cm^?3) and bulk soil was measured by solid‐state ¹³C‐NMR. Decomposition Q₁₀ was significantly correlated with the abundance of aromatic plus alkyl‐C relative to O‐alkyl‐C groups in LFs but not in bulk soil fraction or with the indirect C quality indices based on microbial respiration or biomass. The warming did not significantly change the concentration of biomass C or the three types of soluble C despite two‐ to three‐fold increase in respiration. Thus, enhanced microbial maintenance respiration (reduced C‐use efficiency) especially in the soils rich in recalcitrant LF might lead to the apparent equilibrium between SOM solubilization and microbial C uptake. Our results showed physical fractionation coupled with direct assessment of molecular structure as an effective approach and supported the enzyme‐kinetic interpretation of widely observed C quality‐temperature relationship for short‐term decomposition. Factors controlling long‐term decomposition Q₁₀ are more complex due to protective effect of mineral matrix and thus remain as a central question.     

Analysis of δ13C of CO2 distinguishes between microbial respiration of added C4-sucrose and other soil respiration in a C3-ecosystem

The main aim of this study was to test various hypotheses regarding the changes in ¹³C of emitted CO₂ that follow the addition of C₄-sucrose to the soil of a C₃-ecosystem. It forms part of an experimental series designed to assess whether or not the contributions from C₃-respiration (root and microbial) and C₄-respiration (microbial) to total soil respiration can be calculated from such changes. A series of five experiments, three on sieved (root-free) mor-layer material, and two in the field with intact mor-layer (and consequently with active roots), were performed. Both in the experiments on sieved mor-layer and the field experiments, we found a C₄-sucrose-induced increase in C₃-respiration that accounted for between 30% and 40% of the respiration increase 1 h after sucrose addition. When the course of C₃-, C₄- and total respiration was followed in sieved material over four days following addition of C₄-sucrose, the initially increased respiration of C₃-C was transient, passing within less than 24 h. In a separate pot experiment, neither ectomycorrhizal Pinus sylvestrisL. roots nor non-mycorrhizal roots of this species showed respiratory changes in response to exogenous sucrose. No shift in the ¹³C of the evolved CO₂ after adding C₃-sucrose to sieved mor-layer material was found, confirming that the sucrose-induced increase in respiration of endogenous C was not an artefact of discrimination against ¹³C during respiration. Furthermore, we conclude that the C₄-sucrose induced transient increase in C₃-respiration is most likely the result of accelerated turnover of C in the microbial biomass. Thus, neither respiration of mycorrhizal roots, nor processes discriminating against ¹³C were likely sources of error in the field. The estimated ¹³C of evolved soil CO₂ in three field experiments lay between –25.2 and –23.6. The study shows that we can distinguish between CO₂ evolved from microbial mineralisation of added C₄-sucrose, and CO₂ evolved from endogenous carbon sources (roots and microbial respiration).     

Below-ground carbon distribution in barley (Hordeum vulgare L.) with and without nitrogen fertilization

The distribution of net assimilated C in barley (Hordeum vulgare L.) grown at two N-levels was determined in a growth chamber. The N-fertilization involved 0 and 3.61 mol N g^-1 dry soil. After growth for seven weeks in an atmosphere with continuously ¹⁴C-labelled CO₂, ¹⁴C was determined in shoots, roots, rhizosphere respiration and soil. At the low N-level, 32% of the net assimilated ¹⁴C was translocated below ground, whereas at the high N-level 27% was translocated below ground. The release of C from roots (root respiration, microbial respiration originating from decomposition of ¹⁴C-labelled root material and ¹⁴C remaining in soil) was greater with no N-supply (19% of net assimilated ¹⁴C) than in the treatment with N-supply (15%). Thus, the effect of N-supply on both translocation of assimilated ¹⁴C below ground and the release of ¹⁴C from growing roots was relatively small.     

Soil organic sulfur dynamics in a coniferous forest

Sulfate microbial immobilization and the mineralization of organic S were measured in vitro in soil horizons (LFH, Ae, Bhf, Bf and C) of the Lake Laflamme watershed (47°17 N, 71°14 O) using ³⁵SO₄. LFH samples immobilized from 23 to 77% of the added ³⁵SO₄ within 2 to 11 days. The ³⁵SO₄ microbial immobilization increased with temperature and reached an asymptote after a few days. The mineral soil generally immobilized less than 20% of the added ³⁵SO₄, and an asymptote was reached after 2 days. An isotopic equilibrium was rapidly reached in mineral horizons. A two-compartment (SO₄ and organic S) model adequately described ³⁵SO₄ microbial immobilization kinetics. The active organic reservoir in the whole soil profile represented less than 1% of the total organic S. The average concentrations of dissolved organic S (DOS) in the soil solutions leaving the LFH, Bhf and Bf horizons were respectively 334, 282 and 143 µgL^–1. Assuming that the DOS decrease with soil depth corresponded to the quantities adsorbed in the B horizons, we estimated that 12 800 kgha^–1 of organic S could have been formed since the last glaciation, which is about 13 times the size of the actual B horizons reservoirs. Our results suggest that the organic S reservoirs present in mineral forest soils are mostly formed by the DOS adsorption resulting from incomplete litter decomposition in the humus layer. The capability of these horizons to immobilize SO₄ from the soil solution would be restricted to a 1% active fraction composed of microorganisms. Despite their refractory nature, these reservoirs can, however, be slowly decomposed by microorganisms and contribute to the S-SO₄ export from the watershed in the long term.     

Measurement of rhizosphere respiration and organic matter decomposition using natural 13C

Due to the limitations in methodology it has been a difficult task to measure rhizosphere respiration and original soil carbon decomposition under the influence of living roots. ¹⁴C-labeling has been widely used for this purpose in spite of numerous problems associated with the labeling method. In this paper, a natural ¹³C method was used to measure rhizosphere respiration and original soil carbon decomposition in a short-term growth chamber experiment. The main objective of the experiment was to validate a key assumption of this method: the ¹³C value of the roots represents the ¹³C value of the rhizosphere respired CO₂. Results from plants grown in inoculated carbon-free medium indicated that this assumption was valid. This natural ¹³C method was demonstrated to be advantageous for studying rhizosphere respiration and the effects of living roots on original soil carbon decomposition.     

A closeup study of early beech litter decomposition: potential drivers and microbial interactions on a changing substrate

Aims

Litter decomposition and subsequent nutrient release play a major role in forest carbon and nutrient cycling. To elucidate how soluble or bulk nutrient ratios affect the decomposition process of beech (Fagus sylvatica L.) litter, we conducted a microcosm experiment over an 8 week period. Specifically, we investigated leaf-litter from four Austrian forested sites, which varied in elemental composition (C:N:P ratio). Our aim was to gain a mechanistic understanding of early decomposition processes and to determine microbial community changes.

Methods

We measured initial litter chemistry, microbial activity in terms of respiration (CO₂), litter mass loss, microbial biomass C and N (C_mic and N_mic), non purgeable organic carbon (NPOC), total dissolved nitrogen (TDN), NH₄ ⁺, NO₃ ^- and microbial community composition (phospholipid fatty acids – PLFAs).

Results

At the beginning of the experiment microbial biomass increased and pools of inorganic nitrogen (N) decreased, followed by an increase in fungal PLFAs. Sites higher in NPOC:TDN (C:N of non purgeable organic C and total dissolved N), K and Mn showed higher respiration.

Conclusions

The C:N ratio of the dissolved pool, rather than the quantity of N, was the major driver of decomposition rates. We saw dynamic changes in the microbial community from the beginning through the termination of the experiment.     

13C-Isotopomer-based metabolomics of microbial groups isolated from two forest soils

Soil microorganisms are the primary mediators of organic matter decomposition and humification processes in soil, which represent a critical C flux in the global C cycle. Little is known about how soil microbes regulate carbon cycling including the contribution of their own biomass to stable soil organic matter. A comprehensive understanding of microbial composition is a first step to unraveling microbial regulation of soil humification processes. For this purpose, we isolated 23 microbial strains representing four major groups (Gram (+) bacteria, Gram (−) bacteria, Actinobacteria, and Fungi) from a temperate and a tropical forest soil. The microbial isolates were cultured with uniformly ¹³C-labeled glucose as the C source such that all biochemical components synthesized from glucose were ¹³C labeled. This approach enabled field mesocosm experiments on tracking microbial decomposition, while facilitating solution- and solid-state NMR analysis of microbial composition. Polar and lipid extracts of labeled biomass of the four microbial groups from the two forest sites were profiled by 2D NMR methods, including high-resolution heteronuclear single quantum coherence spectroscopy and HCCH-total correlation spectroscopy. This ¹³C labeling approach also enabled the analysis of intact biomass by 2D solid-state ¹³C–¹³C correlation spectroscopy. Distinction between microbial groups and sites was observed in the polar and lipophilic metabolite profiles. Dominant differences could also be related to the capacity for lipid β-oxidation or adaptation to desiccation. Solid-state NMR further revealed differential synthetic capacity for glycolipids among groups. This technology coupled with ¹³C metabolite profiling should facilitate future functional annotation of indigenous microbial genomes.     

Altered utilization patterns of young and old soil C by microorganisms caused by temperature shifts and N additions

To determine if changes in microbial community composition and metabolic capacity alter decomposition patterns of young and old soil carbon pools, we incubated soils under conditions of varying temperature, N-availability, and water content. We used a soil from a pineapple plantation (CAM; ¹³C litter = –14.1) that had previously been under tropical forest (C3; ¹³C soil carbon = –26.5). Forest derived carbon represented 'old' carbon and plantation inputs represented 'new' carbon. In order to differentiate utilization of young (< 14 years) and old (> 14 years) soil carbon, we measured the ¹³C of respired CO₂ and microbial phospholipid fatty acids (PLFAs) during a 103 day laboratory incubation. We determined community composition (PLFA and bacterial intergenic transcribed spacer (ITS) analysis) in addition to carbon degrading and nutrient releasing enzyme activities. We observed that greater quantities of older carbon were respired at higher temperatures (20 and 35°C) compared to the lower temperature (5°C). This effect could be explained by changes in microbial community composition and accompanying changes in enzyme activities that affect C degradation. Nitrogen addition stimulated the utilization of older soil carbon, possibly due to greater peroxidase activity, but microbial community composition was unaffected by this treatment. Increasing soil moisture had no effect on the utilization of older SOM, but enzyme activity typically declined. Increased oxidative enzyme activities in response to elevated temperature and nitrogen additions point to a plausible mechanism for alterations in C resource utilization patterns.     

Litter species traits, but not richness, contribute to carbon and nitrogen dynamics in an alpine meadow on the Tibetan Plateau

Aims

Litter, as afterlife of plants, plays an important role in driving belowground decomposition processes. Here we tested effects of litter species identity and diversity on carbon (C) and nitrogen (N) dynamics during litter decomposition in N-limited alpine meadow soil from the Qinghai–Tibet Plateau.

Methods

We incubated litters of four meadow species, a sedge (“S”, Kobresia humilis), a grass (“G”, Elymus nutans), a herb (“H”, Saussurea superba), and a legume (“L”, Oxytropis falcata), in monoculture and in mixture with meadow soil. CO₂ release was measured 21 times during the incubation, and soil available N and microbial biomass C and N were measured before and after the experiment.

Results

The organic C decay rate did not differ much among soils amended with monocultures or mixtures of litter, except in the H, S, L, and S+H treatments, which had much higher decay rates. Potential decomposable C pools were lowest in the control, highest in the L treatment, and intermediate in the S treatment. Mineralized N was completely immobilized by soil microbes in all treatments except the control, S+L, and S+G+L treatments. Litter mixtures had both additive and non-additive effects on CO₂-C emission (mainly antagonistic effects), net N mineralization (mainly synergistic), and microbial biomass C and N (both). Overall, these parameters were not significantly correlated with litter species richness. Similarly, microbial C or N was not significantly correlated with litter N content or C/N. However, cumulative CO₂-C emission and net N mineralization were positively correlated with litter N content and negatively correlated with litter C/N.

Conclusions

Litter N content and C/N rather than litter species richness drove the release of CO₂-C and net available N in this ecosystem. The antagonistic effects of litter mixtures contributed to a modest release of CO₂-C, but their synergistic effects enhanced net available N. We suggest that in alpine meadow communities, balancing species with high and low N contents will benefit soil carbon sequestration and plant competition for available N with soil microbes.     

Recruitment preferences of blue mussel spat (Mytilus edulis) for different substrata and microhabitats in the White Sea (Russia)

We adapted the chloroform fumigation method to determine microbial nitrogen (N) and microbial incorporation of ¹⁵N on three common substrates [leaves, wood and fine benthic organic matter (FBOM)] in three forest streams. We compared microbial N and ¹⁵N content of samples collected during a 6-week ¹⁵N–NH₄ tracer addition in each stream. The ¹⁵N was added during late autumn to Upper Ball Creek, a second-order stream at the Coweeta Hydrologic Lab, North Carolina, U.S.A.; during spring to Walker Branch, a first-order stream on DOE's Oak Ridge National Environmental Research Park, Tennessee; and during summer to Bear Brook, a first-order stream in the Hubbard Brook Experimental Forest, New Hampshire. FBOM was the largest component of organic matter and N standing stock in all streams. Microbial N represented the highest proportion of total N in leaves and least in FBOM in Walker Branch and Bear Brook. In Upper Ball Creek, the proportion of microbial N was higher in FBOM than in used biofilm or on leaves. Standing stock of microbial N on leaves and in FBOM ranged from 37 mg N m^–2 in Bear Brook to 301 mg N m^–2 in Walker Branch. Percent of detrital N in living microbial cells was directly related to total microbial biomass (fungal and bacterial biomass) determined from microscopic counts. ¹⁵N values for microbes were generally higher than for bulk detritus, which would result in higher ¹⁵N values for animals preferentially consuming or assimilating microbial cells. The proportion of ¹⁵N taken up by detritus during the ¹⁵N experiments that remained in microbial cells by the end of the experiments was highest for wood biofilm in Upper Ball Creek (69%), leaves in Walker Branch (65%) and FBOM in Upper Ball Creek (31%). Lower retention proportions (<1–25%) were observed for other substrates. Our results suggest that microbial cells associated with leaves and wood biofilm were most active in ¹⁵N–NH₄ immobilization, whereas microbial cells associated with FBOM immobilized little ¹⁵N from stream water.     

Soil organic carbon dynamics: variability with depth in forested and deforested soils under pasture in Costa Rica

Dynamics of soil organic carbon (SOC) inchronosequences of soils below forests that had beenreplaced by grazed pastures 3–25 years ago, wereinvestigated for two contrasting soil types (AndicHumitropept and Eutric Hapludand) in the Atlantic Zoneof Costa Rica. By forest clearing and subsequentestablishment of pastures, photosynthesis changes froma C-3 to a C-4 pathway. The accompanying changes inC-input and its ¹³C and ¹⁴Csignals, were used to quantify SOC dynamics. C-input from rootturnover at a pasture site was measured by sequentialharvesting and ¹⁴C-pulse labelling. With aspatial resolution of 5 cm, data on total SOC,¹³C and ¹⁴C of soil profileswere interpreted with a model that distinguishes threepools of SOC: active C, slow C and passive C,each with a 1^-st order decomposition rate(k_a, k_s and k_p). The modelincludes carbon isotope fractionation and depth-dependentdecomposition rates. Transport of C between soillayers was described as a diffusion process, whichaccounts for physical and biotic mixing processes.Calibrated diffusion coefficients were 0.42 cm²yr-¹ for the Humitropept and 3.97 cm²yr-¹ for the Hapludand chronosequence.Diffusional transport alone was insufficient foroptimal simulation; it had to be augmented bydepth-dependent decomposition rates to explain thedynamics of SOC, ¹³C and¹⁴C. Decomposition rates decreasedstrongly with depth. Upon increased diffusion,differences between calibrated decomposition rates ofSOC fractions between surface soils and subsoilsdiminished, but the concept of depth-dependentdecomposition had to be retained, to obtain smallresiduals between observed and simulated data. At areference depth of 15–20 cm k_s was 90 yr-¹in the Humitropept and 146 yr-¹ in the Hapludand.Slow C contributed most to total organic C in surfacesoils, whereas passive C contributed most below 40 cmdepth. After 18–25 years of pasture, net loss of C was2180 g C m-² for the Hapludand and 150 g m-²for the Humitropept soil.     

Nitrogen mineralization and denitrification as influenced by crop residue particle size

Managing the crop residue particle size has the potential to affect N conservation in agricultural systems. We investigated the influence of barley (Hordeum vulgare) and pea (Pisum sativum) crop residue particle size on N mineralization and denitrification in two laboratory experiments. Experiment 1: ¹⁵N-labelled ground (3 mm) and cut (25 mm) barley residue, and microcrystalline cellulose+glucose were mixed into a sandy loam soil with additional inorganic N. Experiment 2: inorganic¹⁵ N and C₂H₂ were added to soils with barley and pea material after 3, 26, and 109 days for measuring gross N mineralization and denitrification.Net N immobilization over 60 days in Experiment 1 cumulated to 63 mg N kg^-1 soil (ground barley), 42 (cut barley), and 122 (cellulose+glucose). More N was seemingly net mineralized from ground barley (3.3 mg N kg^-1 soil) than from cut barley (2.7 mg N kg^-1 soil). Microbial biomass peaked at day 4 with the barley treatments and at day 14 with the cellulose+glucose whereafter the biomass leveled out at values 79 mg C kg^-1 (ground), 104 (cut), and 242 (cellulose+glucose) higher than for the control soil. Microbial growth yields were similar for the two barley treatments, ca. 60 mg C g^-1 substrate C added, which was lower than the 142 mg C g^-1 C added with cellulose+glucose. This suggests that the 75% (w/w) holocelluloses and sugars contained with the barley material remained physically protected despite grinding. In Experiment 2 gross mineralization on day 3 was 4.8 mg N kg^-1 d^-1 with ground pea, twice as much as for all other treatments. On day 26 the treatment with ground barley had the greatest gross N mineralization. In static cores ground barley denitrified 11-fold more than did cut barley, whereas denitrification was similar for the two pea treatments. In suspensions denitrification was similar for the two treatments both with barley and pea residue.We conclude that the higher microbial activity associated with the initial decomposition of ground plant material is due to a more intimate plant residue-soil contact. On the long term, grinding the plant residues has no significant effect on N dynamics.     

Litter fingerprint on microbial biomass,activity, and community structure in the underlying soil

Aims

Little is known about how plant leaf litter decomposing on the soil surface is affecting microbial communities in the underlying soil. Here we examined the effects of decomposing leaf litter of different initial chemistry on biomass, stoichiometry, community structure and activity of microorganisms in the soil underneath the decaying litter layer.

Methods

Leaf litter from six different neotropical tree species with contrasted quality decomposed on top of a common tropical soil in a laboratory microcosm experiment over 98 days. At the end of the experiment we determined microbial biomass C, N, and P, microbial community structure (PLFA), and community level physiological profiles (CLPP) from the top soil.

Results

Despite growing in a common soil substrate, soil microorganisms were strongly affected by litter species, especially by the soluble litter fraction. While litters with low soluble C content did not affect the soil microbial community, litters with high soluble C content led to an increase of microbial biomass and to a structural shift to relatively more Gram-negative bacteria. Changing community structure resulted in changes of catabolic capacity of microorganisms to metabolize a range of different C substrates. The large differences in leachate N and P among litter species, in contrast, had no effect on soil microbial parameters.

Conclusions

Our data suggest that plant litter decomposing on the soil surface exhibit a strong and predictable leachate C-control over microbial community biomass, structure and function in the underlying soil.

     

Mineralization of 14C-labelled maize in alkaline saline soils

The turnover of organic material determines the availability of plant nutrients in unfertilized soils, and this applies particularly to the alkaline saline soil of the former Lake Texcoco in Mexico. Uniformly labelled [¹⁴C] maize and its neutral detergent fibre (NDF) fraction, mainly containing cellulose and hemi-cellulose, were added to these soils to investigate dynamics of C and N and the importance of the NDF fraction. Soil with electrolytic conductivity (EC) of 1.2, 3.2, 24.6 and 32.7 dS m^–1 was incubated aerobically, while CO₂ and ¹⁴CO₂ production, and inorganic N dynamics (NH₄ ⁺, NO₂ ^–, NO₃ ^–) were monitored. The amount of ¹⁴C-labelled maize mineralized after 97 days was >500 mg C kg^–1 dry soil (D.S.) of the 1000 mg C kg^–1 D.S. added in soils with EC 24.6 dS m^–1, but only 257 mg C kg^–1 D.S. in soil with EC 32.7 dS m^–1. The decomposition of the NDF fraction showed a lag, greatest in the soil with the largest EC and the amount of ¹⁴C-labelled NDF fraction mineralized after 97 days was > 300 mg C kg^–1 D.S. in soils with EC 3.2 dS m^–1, but in the soil with EC 32.7 dS m^–1 it was only 118 mg C kg^–1D.S. Application of ¹⁴C-labelled maize and the NDF fraction induced a priming effect, most accentuated at the onset of the incubation. The ratio between the amount of CO₂ produced due to the priming effect and the ¹⁴CO₂ produced was 16-times larger when 250 mg maize-C kg^–1 D.S. was added and only 3-times when 2000 mg maize-C kg^–1 D.S. was added. Oxidation of NO₂ ^– occurred in soil with EC 32.7 dS m^–1 as witnessed by decreases in concentration of NO₂ ^– and increases in concentration of NO₃ ^–. It was found that EC affected the decomposition of maize, the NDF fraction and the priming effect. Decomposition of cellulose and oxidation of NO₂ ^– occurred in soil with EC 32.7 dS m^–1 although cellulolytic micro-organisms and autotrophic NO₂ ^– oxidizers could previously not be isolated from this soil.     

Distribution of assimilated carbon in plants and rhizosphere soil of basket willow (Salix viminalis L.)

Willow is often used in bio-energy plantations for its potential to function as a renewable energy source, but knowledge about its effect on soil carbon dynamics is limited. Therefore, we investigated the temporal variation in carbon dynamics in willow, focusing on below-ground allocation and sequestration to soil carbon pools. Basket willow plants (Salix viminalis L.) in their second year of growth were grown in pots in a greenhouse. At five times during the plants growth, namely 0, 1, 2, 3 and 4 months after breaking winter dormancy, a subset of the plants were continuously labelled with ¹⁴CO₂ in an ESPAS growth chamber for 28 days. After the labelling, the plants were harvested and separated into leaves, first and second year stems and roots. The soil was analysed for total C and ¹⁴C content as well as soil microbial biomass. Immediately after breaking dormancy, carbon stored in the first year stems was relocated to developing roots and leaves. Almost half the newly assimilated C was used for leaf development the first month of growth, dropping to below 15% in the older plants. Within the second month of growth, secondary growth of the stem became the largest carbon sink in the system, and remained so for the older age classes. Between 31 and 41% of the recovered ¹⁴C was allocated to below-ground pools. While the fraction of assimilated ¹⁴C in roots and root+soil respiration did not vary with plant age, the amount allocated to soil and soil microbial biomass increased in the older plants, indicating an increasing rhizodeposition. The total amount of soil microbial biomass was 30% larger in the oldest age class than in an unplanted control soil. The results demonstrate a close linkage between photosynthesis and below-ground carbon dynamics. Up to 13% of the microbial biomass consisted of carbon assimilated by the willows within the past 4 weeks, up to 11% of the recovered ¹⁴C was found as soil organic matter.