The impact of genomics and related technologies on the search for new antibiotics

1. Summary,  7
2. Unmet medical need,  7
3. Addressing the real problems in antimicrobial drug  discovery,  7
4. Genomics and target selection,  8
5. Target to candidate drug,  10
6. Conclusions,  11
7. References,  11     

Effect of gold nanoparticle on the microscopic morphology of white blood cell

Background:  In medicine, there is limited knowledge on the toxicity of nanoparticles. In medicine, there has been limited knowledge on the effect of nanoparticles on the white blood cell.
Objective:  To evaluate the effect of gold nanoparticle on the microscopic morphology of white blood cell.
Setting:  Chulalongkorn Univesity, Bangkok, Thailand.
Method:  This study was performed as an experimental study. Mixture of gold nanoparticle solution and blood sample was prepared and analysed.
Result:  This work revealed that after mixing the blood sample with gold nanoparticle solution, accumulation of gold nanoparticle in the white blood cell was observed.
Conclusion:  The effect of gold nanoparticle on the white blood cell can be detected and this knowledge can be used in cytotoxic drug treatment.     

The effect of hind-tibial spurs on digging rate in female eastern cicada killers

Abstract.  1. The function of the large hind-tibial spurs of female eastern cicada killer wasps ( Sphecius speciosus ), thought to be adaptations to digging, was examined by measuring the effect of spurs on digging rate.
2. Spurs were removed from one group of wasps and left intact in control specimens.
3. Wasps with intact spurs removed soil from the burrow at a rate of 0.98 ± 0.11 (16) g dry mass min⁻¹ [mean ± SEM ( N )]. Removal of spurs results in an average digging rate just over one-half that, 0.54 ± 0.13 (9) g min⁻¹.
4. The difference in digging rate was primarily because of a twofold greater mass of soil unloaded by intact wasps each time they exited the burrow, rather than the rate at which such loads were delivered.
5. Such inefficiency results in an estimated additional 8.2 h requirement to fully excavate an average burrow, or a 1–4% reduction in time available for foraging in spur-ablated wasps.
6. Calculations suggest that the time lost to digging would result in a 3.9–19.5% reduction in foraging success for spurless females.
7. These temporal and resulting foraging advantages of hind-tibial spurs presumably provided selection pressure for their evolution from smaller, pre-existing setae.     

What limits the altitudinal distribution of Craspedolepta species (Sternorrhyncha: Psylloidea) on fireweed?

Abstract.  1.  Craspedolepta nebulosa and C. subpunctata were studied on their shared host plant Epilobium angustifolium along an altitudinal transect in the Hardangervidda area of southern Norway.
2. The following was investigated: whether (a) the altitudinal distribution and abundance of each psyllid species was determined by summer heat budgets, acting directly on rates of insect development and/or through their host plant and (b) whether parasitism, predation, and interspecific competition played any role in restricting the distribution of the two species .
3.  Craspedolepta nebulosa extended to higher elevations than C. subpunctata but within their ranges neither species showed a clear altitudinal trend in abundance per plant. However, the former species grew to a smaller size with increasing elevation.
4. There was little evidence for interspecific competitive effects and observed levels of parasitism and predation were negligible across the transect.
5. Development and distribution of both species mirrored significant differences in the phenology, size, leaf number, and reproductive output of E. angustifolium with increasing altitude.
6. Distributions were related to available heat budgets acting on psyllid/plant development rates, with C. nebulosa developing more efficiently at lower heat availability.
7. Population transplant experiments supported the overall conclusions, with neither psyllid species able to establish viable populations above their current upper altitudinal range limit, despite the presence of their host plant.     

Factors influencing the seasonal life history of the pitcher-plant mosquito, Wyeomyia smithii

Abstract.  1. The effects of resource levels, thermal microclimate, and seasonal oviposition patterns on fecundity and survivorship in the pitcher-plant mosquito, Wyeomyia smithii (Coq.), were examined at a northern Wisconsin bog over the course of 2 years. Wyeomyia smithii are bivoltine at this locality, thereby enabling the study of summer and overwintering generations separately.
2. Nutrient resources of W. smithii were not limiting and there was no indication of density-dependent survivorship or fecundity.
3. Oviposition rates were highest in young, large pitchers and individual mosquitoes appeared to allocate only a few eggs to any one leaf.
4. Winter was the harsh season, and the principal manifestation of seasonal harshness was reduced survivorship.
5. Overwintering W. smithii that had been oviposited later in the summer had a higher odds of survival than those oviposited earlier in the summer.
6. It was concluded that dispersal of eggs among many pitchers serves to spread the risk of encountering lethal winter temperatures among spatially unpredictable patches.     

Temporal trends in phenology of the honey bee Apis mellifera (L.) and the small white Pieris rapae (L.) in the Iberian Peninsula (1952–2004)

Abstract.  1. The first adult appearance of two insect species, the honey bee Apis mellifera (L.) and the small white Pieris rapae (L.), was examined between 1952 and 2004 in Spain.
2. After factoring out the variability resulting from the broad geographical and topographical range of the 798 sampling localities, multiple regression models were used to detect temporal trends in phenology.
3. The best models were repeated, including spring temperature as the explanatory variable to examine the effects of climate on appearance phenology.
4. Both species showed similar temporal trends, delaying their appearance phenology until the mid-1970s and advancing it since that time.
5. The appearance times for both species were negatively related to mean temperature between February and April, with both species appearing earlier in years with warmer springs.
6. The strong dependence of appearance dates on temperature indicates that climatic fluctuations are primarily responsible for the inter-annual variability in spring appearance phenology of both species, and consequently account for the observed long-term trends.
7. This study demonstrates that insect phenology is an accurate and sensitive bioindicator of climate change.     

Intrinsic competition between larval parasitoids with different degrees of host specificity

Abstract.  1. Interspecific competition among parasitoids may play a key role in the community dynamics of tritrophic plant–herbivore–parasitoid systems and has important implications for management of herbivorous insect pests.
2. A model system was used to explore the outcome of interspecific competition between parasitoids that differ in host specificity. The system included the lepidopteran pest Heliothis virescens , the generalist parasitoid Cotesia marginiventris , and two specialist parasitoids, Microplitis croceipes and Cardiochiles nigriceps .
3. The generalist, C. marginiventris , dominated intrinsic competition when given an 8-h developmental head start over C. nigriceps or when its oviposition was simultaneous with that of M. croceipes . Microplitis croceipes and especially C. nigriceps larvae prevailed when they were allowed to oviposit prior to C. marginiventris .
4. Rates of host mortality prior to parasitoid emergence varied with parasitoid species composition and with the order of oviposition.
5. Implications for integrated pest management and the adaptive significance of competition as related to host specialisation are discussed.     

Bacteria in oral secretions of an endophytic insect inhibit antagonistic fungi

Abstract.  1. Colonisation of host trees by an endophytic herbivore, the spruce beetle, Dendroctonus rufipennis , is accompanied by invasion of its galleries by a number of fungal species. Four of these associated species were identified as Leptographium abietinum , Aspergillus fumigatus , Aspergillus nomius , and Trichoderma harzianum .
2.  Trichoderma and Aspergillus significantly reduced spruce beetle survival and reproduction in controlled assays.
3. A previously undescribed behaviour was observed, in which spruce beetle adults exuded oral secretions, especially within fungus-pervaded galleries.
4. These oral secretions inhibited the growth of fungi except A. nomius , and disrupted the morphology of the latter. Administration of these secretions indicated a dose-dependent inhibitory effect.
5. Oral secretions cultured on microbiological media yielded substantial bacterial growth.
6. Filter-sterilised secretions failed to inhibit fungal growth, evidence that the bacteria are responsible for the antifungal activity.
7. Nine bacterial isolates belonging to the Actinobacteria, Firmicutes, Gammaproteobacteria, and Betaproteobacteria taxa were obtained from the secretions.
8. Bacterial isolates showed species-specific inhibitory activity against the four fungi antagonistic to spruce beetle. The bacterium with the strongest fungal inhibition activity was the actinomycete Micrococcus luteus .
9. The production of bark beetle secretions containing bacteria that inhibit fungal growth is a novel finding. This suggests an additional level of complexity to ecological associations among bark beetles, conifers, and microorganisms, and an important adaptation for colonising subcortical tissue.     

When time is of the essence: choosing a currency for prey-handling costs

1.  Heartbeat rate was measured in shore crabs Carcinus maenas (L.) feeding on mussels Mytilus edulis L. in order to estimate the energetic cost of handling prey and to assess the relative importance of energy and time as costing currencies.
2.  Energetic handling costs represented approximately 2% of corresponding gains.
3.  The tendency of profitability (gain per unit handling time) to increase with prey size was weakened by including energetic handling costs.
4.  Time was judged to be a more appropriate currency than energy for costing prey-handling behaviour.
5.  The importance of time as a costing currency, either through the principle of lost opportunity or through exposure to mortality risk, may extend to other behavioural systems, including aggression.     

Short-term and long-term effects of zooplanktivorous fish removal in a shallow lake: a synthesis of 15 years of data from Lake Zwemlust

SUMMARY 1. Removal of zooplanktivorous fish (mainly bream) in 1987 from a shallow eutrophic lake in the Netherlands, Lake Zwemlust, resulted in a quick switch from a turbid state with cyanobacteria blooms to a clear state dominated by macrophytes.
2. The clear state was not stable in the long term, however, because of high nutrient loadings.
3. In 1999, another removal of zooplanktivorous fish (mainly rudd) had similar effects as in 1987, although macrophytes returned more slowly.
4. In the years directly following both interventions there was a 'transition period' of very clear water with high densities of zooplanktonic grazers in the absence of macrophytes; low oxygen concentrations indicate that during those years primary production was low relative to heterotrophic activity.
5. The transition period appears to provide the light climate necessary for the return of macrophytes.
6. Reduction of nutrient loading is necessary to improve water quality in Lake Zwemlust in the long term. In the short term, repeated fish stock reduction is a reasonable management strategy to keep Lake Zwemlust clear.     

Influence of habitat structure on the phonotactic strategy of a parasitoid fly Emblemasoma auditrix

Abstract.  1. Females of the parasitoid fly Emblemasoma auditrix find their host cicadas ( Okanagana rimosa ) using the acoustic signals produced by the host. The phonotactic behaviour of the parasitoid was studied with regard to differently structured habitats.
2. Habitats were modified experimentally within a distance of 2.5 m (approximately the natural range of phonotaxis) from a loudspeaker broadcasting a model of the host calling song.
3. Video analysis showed that in an open habitat (no landmarks) more than 60% of the flies performed a direct flight towards the loudspeaker.
4. In structured habitats (with one to three landmarks) more than 90% of the flies landed on their way to the acoustic target.
5. In about 50% of the landings flies paused for several seconds indicating re-orientation during that time. Several flies included sequences of walking in their approach behaviour, whereby most walking occurred close to the loudspeaker.
6. In summary, the phonotactic approach and host finding depends on the habitat structure.     

Lime treatment and its effects on the chemistry and biota of hardwater eutrophic lakes

1. The main focus of this study was to investigate the effects of single and multiple moderate doses of lime (slaked lime, Ca(OH)₂, and/or calcite, CaCO₃) on eutrophic hardwater lakes. This information would contribute to strategies to manage phytoplankton and macrophyte biomass in eutrophic lakes.
2. Water chemistry and biota were monitored for up to 7 years after initial lime treatment and results were compared with reference systems.
3. Complementary studies investigated the effect of lime on macrophytes in ponds, irrigation canals and microcosm experiments.
4. When water pH was kept within its natural range (≤ 10), single and multiple lime applications to lakes and ponds controlled macrophyte biomass, without negatively affecting invertebrate communities.
5. Single lime treatments at moderate dosages of lakes and ponds resulted in variable and mostly temporary changes in chlorophyll a (chl a ) and phosphorus (P) concentration. Although sediment P release was reduced in single-dose lakes during the first winter following treatment, reductions appeared temporary.
6. Multiple treatments of lakes and ponds were effective at reducing both chl a and P concentrations over longer periods. Mean winter P release rate was also reduced after initial treatment.
7. In laboratory studies, sediment cores were incubated with eight different treatments to assess P release. Redox-sensitive treatments were no more effective at lowering total P concentration in overlying water than some redox-insensitive treatments. Lime reduced total P concentrations, but was not as effective as treatments with alum.
8. The use of lime in managing macrophyte and phytoplankton biomass in shallow, hardwater lakes and ponds may be preferable over other treatments, because lime is economical and non-toxic as long as pH is kept within a natural range.     

Influence of egg size differences within egg clutches on larval parameters in nine libellulid species (Odonata)

Abstract.  1. In libellulids, egg size differs between species and populations. There are also size differences within egg clutches of individual females.
2. Past experiments suggest that there are two different types of egg clutches in libellulids. Egg size decreases significantly during oviposition in species that perform non-contact guarding during oviposition. In contrast, in species ovipositing in tandem, egg size is randomly distributed.
3. This study deals with the possible consequences of egg size variation within the different egg clutch types. The study examined whether there is a correlation between egg development time, offspring sex or larval size and egg size.
4. The current experiments were conducted in Namibia and Germany. Five non-contact guarding and four tandem guarding libellulid species were used.
5. In some species larger eggs needed more time to develop, in some species no correlation between egg size and egg development time could be found, whereas in other species larger eggs developed faster.
6. The sex ratio was biased towards females in Leucorrhinia dubia and in Sympetrum striolatum and egg size was not associated with gender.
7. In both egg clutch types larger eggs resulted in larger larvae. In this study, evidence was found that the effects of egg size diminished with progressing larval development under good conditions. However, it is possible that the effects may have a greater influence under harsh circumstances.     

Contrasting movement patterns in two species of chequerspot butterflies, Euphydryas aurinia and Melitaea phoebe, in the same patch network

Abstract.  1. Mark–release–recapture studies were conducted on two species of chequerspot butterfly, Euphydryas aurinia and Melitaea phoebe , in the same habitat patch network in Yanjiaping, a small basin in the Taihang Mountains, north-west of Beijing, China, in 2000.
2. Euphydryas aurinia tended to stay in the habitat patches and to move to neighbouring patches, whereas M. phoebe moved widely among patches in the entire network.
3. The parameters of the virtual migration model showed higher daily emigration propensity in M. phoebe and in E. aurinia males than in E. aurinia females, and significantly greater average daily movement distance in M. phoebe than in E. aurinia .
4. The results are consistent with the previous findings showing genetic structuring among local populations of E. aurinia but not among local populations of M. phoebe .
5. Based on the genetic and ecological results, it was concluded that E. aurinia has a classic metapopulation in the study area, whereas M. phoebe appears to have a source–sink metapopulation.
6. In 2000, when there was an overall increase in the abundance of the two species, the limited mobility of E. aurinia resulted in an increase in the average local population size, whereas the increase in the number of local populations in M. phoebe was due to its high mobility .     

Viability of cotton and canola pollen on the proboscis of Helicoverpa armigera: implications for spread of transgenes and pollination ecology

Abstract.  1. Pollen can be transported thousands of kilometres by insects but its viability after long-distance transport is not known. Knowing the potential for this mechanism to cause outcrossing of transgenes from genetically modified (GM) plants is important for risk assessments.
2. The viability of pollen from cotton ( Gossypium hirsutum L.) and canola ( Brassica napus L.) was determined after placing it on the proboscis of Helicoverpa armigera moths for intervals of up to 32 h. Viability of both cotton and canola pollen declined at a much greater rate when in contact with the moth proboscis. Most was non-viable by 8 h compared with 16 h for control cotton pollen or 32 h for canola pollen.
3. There was no significant difference in the rate of decline of pollen viability between the five conventional cotton varieties, or between these and the one GM cotton variety used in these experiments.
4. The number of canola pollen grains remaining on the proboscis declined over time. Very few cotton pollen grains were retained on the proboscis.
5. The reduction in pollen viability during contact with the proboscis might indicate partial ingestion of the pollen via the proboscis.
6. The points above suggest that pollen is unlikely to remain attached or remain viable when carried over large distances by H. armigera . The implications for spread of pollen from transgenic plants and for pollination ecology in general are discussed.     

Effects of aggregation pheromone on individual behaviour and food web interactions: a field study on Drosophila

Abstract.  1. The effects of an aggregation pheromone on individual behaviour and food web interactions were investigated in two ecological communities, using Drosophila melanogaster and D. simulans as focal species.
2. Fruit substrates with aggregation pheromone were significantly more attractive to adult D. melanogaster and D. simulans than control fruit substrates, and the response was positively dose dependent. Competing species and natural enemies were also significantly attracted to substrates with the aggregation pheromone of D. melanogaster and D. simulans .
3. Significantly more eggs were deposited on pheromone-treated fruits than on control fruits, and the microdistribution of eggs within fruits was correlated to the microdistribution of the pheromone. The aggregation pheromone induced more females to share the breeding site.
4. The extremely high densities of fruit flies in the large aggregations appeared to reduce the oviposition rate of females. Physical interactions with conspecific and heterospecifics were frequently observed in the aggregations, and often led to patch leaving of the fruit flies.
5. Competition for food among larvae occurred at high densities and parasitism was density dependent. Aggregation pheromones can be directly responsible for these patterns through their effects on the con- and heterospecific behaviour.
6. The combined results show that aggregation pheromones affect a multitude of aspects in the ecology of interacting animals. The importance of incorporating the communication signals in ecological theory of aggregations is discussed.     

Mixotrophic ciliates in an Andean lake: dependence on light and prey of an Ophrydium naumanni population

1. Planktonic ciliates were examined during a spring–summer period (November 1998–April 1999) in the ultraoligotrophic Lake Moreno Oeste (41°5' S and 71°33' W, 758 m a.s.l), which belongs to the Nahuel Huapi System (Patagonia, Argentina). The lake is deep ( Z _max=90 m) and warm monomictic.
2. Sampling was performed at a mid-lake station, where vertical profiles of temperature and light were measured in situ , and samples for bacteria and ciliates enumeration were taken throughout the water column.
3. The peritrich Ophrydium naumanni , a freshwater pelagic ciliate with endosymbiotic Chlorella , was the dominant ciliate in the lake.
4.  Ophrydium naumanni and autotrophic picoplankton exhibit a clear coincidence in their vertical distribution ( P  < 0.05), preferring levels at or near the 1% of surface photosynthetically active radiation (PAR) irradiance. Both may have the same light requirements, or the coincidence may reflect a trophic relationship.
5. Dependence on light and prey by O. naumanni were studied using field experiments, in which we analysed ciliate grazing on bacteria, and in laboratory experiments, in which we compared particle uptake under dark and light conditions.
6.  Ophrydium naumanni was able to ingest particles [latex microspheres and fluorescently labelled bacteria (FLB)] in field and laboratory experiment, indicating that it has the potential to affect bacteria population of Lake Moreno Oeste.
7. Ciliate particle ingestion was observed to be dependent on light availability because under dark conditions, the ingestion was lowered ( P  < 0.05).     

Thermal biology of the meadow grasshopper, Chorthippus parallelus, and the implications for resistance to disease

Abstract.  1. The thermal biology of the meadow grasshopper, Chorthippus parallelus , a common, habitat generalist acridid species found in the U.K., was characterised and the influence of thermoregulatory behaviour for resistance against a temperate ( Beauveria bassiana ) and tropical ( Metarhizium anisopliae var. acridum ) fungal pathogen was determined.
2.  Chorthippus parallelus was found to be an active behavioural thermoregulator, with a preferred temperature range of 32–35 °C.
3. Both pathogens proved lethal to fifth instar and adult grasshoppers. No evidence of behavioural fever in response to infection by either pathogen was found, but normal thermoregulation was found to reduce virulence and spore production of B. bassiana. Normal thermoregulation did not appear to affect M. anisopliae var. acridum .
4. These results suggest that the effects of temperature on host resistance depend on the thermal sensitivity of the pathogen and, in this case, derive from direct effects of temperature on pathogen growth rather than indirect effects mediated by host immune response.
5. The implications for possible risks of exotic pathogens and influence of climate change are discussed.     

The deleterious effects of salinity stress on leafminers and their freshwater host

Abstract.  1. Salinity is an important cause of abiotic stress in wetland communities yet little is known about its consequences for freshwater plants and their insect herbivores. The goal of this study was to test the effect of salinity on a leafmining insect, Cerodontha iridiphora , and its herbaceous host plant, Iris hexagona .
2. Leafminer performance was evaluated on irises grown in control and saline treatments, and the effects of salinity and herbivory on leaf quality and mortality was measured.
3. Leafminer density and size were significantly lower on irises grown in saline water compared with freshwater.
4. Both salinity and herbivory accelerated leaf senescence and mortality, and their combined effects increased tissue loss by an order of magnitude compared with controls.
5. Leafminers acted as nutrient sinks. The undamaged regions of mined leaves contained 40% less nitrogen than unmined leaves, providing a mechanism for the premature leaf mortality.
6. Salinity was detrimental to the performance and survival of both the iris leafminer and its host plant. We propose that glycophytic host plants and their insect herbivores will suffer more than halophytic communities from environmental salinity because they lack the adaptive mechanisms to tolerate this potent physiological stress.     

Maternal investment and size-specific reproductive output in carcharhinid sharks

1.  Life-history theory predicts that organisms will provide an optimal level of parental investment for offspring survival balanced against the effects on their own survival and future reproductive potential.
2.  Optimal resource allocation models also predict an increase in reproductive output with age as expected future reproductive effort decreases. To date, maternal investment in sharks has received limited attention.
3.  We found that neonatal dusky sharks ( Carcharhinus obscurus ) are not independent from maternal resource allocation at the point of parturition but instead are provisioned with energy reserves in the form of an enlarged liver that constitutes approximately 20% of total body mass.
4.  Analysis of long-term archived data sets showed that a large proportion of this enlarged liver is utilized during the first weeks or months of life suggesting that the reported weight loss of newborn sharks signifies a natural orientation process and is not necessarily related to prey abundance and/or indicative of high mortality rates.
5.  Interrogation of near-term pup mass in two carcharhinids, the dusky and spinner shark ( Carcharhinus brevipinna ), further revealed an increase in reproductive output with maternal size, with evidence for a moderate decline in the largest mothers.
6.  For the dusky shark, there was a trade-off between increasing litter size and near-term pup mass in support of optimal offspring size theory.
7.  For both the dusky and spinner shark, there was a linear increase in near-term pup mass with month, which may indicate variable parturition strategies and/or that carcharhinids are able to adjust the length of the gestation period.
8.  The identification of optimal size-specific reproductive output has direct implications for improving the reproductive potential of exploited shark populations and for structuring future management strategies.