Carbon sequestration and turnover in soil under the energy crop Miscanthus: repeated 13C natural abundance approach and literature synthesis

The stability and turnover of soil organic matter (SOM) are a very important but poorly understood part of carbon (C) cycling. Conversion of C₃ grassland to the C₄ energy crop Miscanthus provides an ideal opportunity to quantify medium‐term SOM dynamics without disturbance (e.g., plowing), due to the natural shift in the δ¹³C signature of soil C. For the first time, we used a repeated ¹³C natural abundance approach to measure C turnover in a loamy Gleyic Cambisol after 9 and 21 years of Miscanthus cultivation. This is the longest C₃–C₄ vegetation change study on C turnover in soil under energy crops. SOM stocks under Miscanthus and reference grassland were similar down to 1 m depth. However, both increased between 9 and 21 years from 105 to 140 mg C ha^?1 (P < 0.05), indicating nonsteady state of SOM. This calls for caution when estimating SOM turnover based on a single sampling. The mean residence time (MRT) of old C (>9 years) increased with depth from 19 years (0–10 cm) to 30–152 years (10–50 cm), and remained stable below 50 cm. From 41 literature observations, the average SOM increase after conversion from cropland or grassland to Miscanthus was 6.4 and 0.4 mg C ha^?1, respectively. The MRT of total C in topsoil under Miscanthus remained stable at ~60 years, independent of plantation age, corroborating the idea that C dynamics are dominated by recycling processes rather than by C stabilization. In conclusion, growing Miscanthus on C‐poor arable soils caused immediate C sequestration because of higher C input and decreased SOM decomposition. However, after replacing grasslands with Miscanthus, SOM stocks remained stable and the MRT of old C₃‐C increased strongly with depth.     

Assessing the impact of land-use change on soil C sequestration in agricultural soils by means of organic matter fractionation and stable C isotopes

Within the framework of the Kyoto Protocol, the potential mitigation of greenhouse gas emissions by terrestrial ecosystems has placed focus on carbon sequestration following afforestation of former arable land. Central to this soil C sequestration are the dynamics of soil organic matter (SOM). In North Eastern Italy, a mixed deciduous forest was planted on continuous maize field soil with a strong C₄ isotopic C signature 20 years ago. In addition, a continuous maize field and a relic of the original permanent grassland were maintained at the site, thus offering the opportunity to compare the impacts on soil C dynamics by conventional agriculture, afforestation and permanent grassland. Soil samples from the afforested, grassland and agricultured systems were separated in three aggregate size classes, and inter‐ vs. intra‐aggregate particulate organic matter was isolated. All fractions were analyzed for their C content and isotopic signature. The distinct ¹³C signature of the C derived from maize vegetation allowed the calculation of proportions of old vs. forest‐derived C of the physically defined fractions of the afforested soil. Long‐term agricultural use significantly decreased soil C content (?48%), in the top 10 cm, but not SOM aggregation, as compared to permanent grassland. After 20 years, afforestation increased the total amount of soil C by 23% and 6% in the 0–10 and in the 10–30 cm depth layer, respectively. Forest‐derived carbon contributed 43% and 31% to the total soil C storage in the afforested systems in the 0–10 and 10–30 cm depths, respectively. Furthermore, afforestation resulted in significant sequestration of new C and stabilization of old C in physically protected SOM fractions, associated with microaggregates (53–250 μm) and silt&clay (<53 μm).     

Carbon mitigation by the energy crop, Miscanthus

Biomass crops mitigate carbon emissions by both fossil fuel substitution and sequestration of carbon in the soil. We grew Miscanthus x giganteus for 16 years at a site in southern Ireland to (i) compare methods of propagation, (ii) compare response to fertilizer application and quantify nutrient offtakes, (iii) measure long-term annual biomass yields, (iv) estimate carbon sequestration to the soil and (v) quantify the carbon mitigation by the crop. There was no significant difference in the yield between plants established from rhizome cuttings or by micro-propagation. Annual off-takes of N and P were easily met by soil reserves, but soil K reserves were low in unfertilized plots. Potassium deficiency was associated with lower harvestable yield. Yields increased for 5 years following establishment but after 10 years showed some decline which could not be accounted for by the climate driven growth model MISCANMOD. Measured yields were normalized to estimate both autumn (at first frost) and spring harvests (15 March of the subsequent year). Average autumn and spring yields over the 15 harvest years were 13.4±1.1 and 9.0±0.7 t DW ha⁻¹ yr⁻¹ respectively. Below ground biomass in February 2002 was 20.6±4.6 t DW ha⁻¹. Miscanthus derived soil organic carbon sequestration detected by a change in ¹³C signal was 8.9±2.4 t C ha⁻¹ over 15 years. We estimate total carbon mitigation by this crop over 15 years ranged from 5.2 to 7.2 t C ha⁻¹ yr⁻¹ depending on the harvest time.     

Linking sequestration of 13C and 15N in aggregates in a pasture soil following 8 years of elevated atmospheric CO2

The influence of N availability on C sequestration under prolonged elevated CO₂ in terrestrial ecosystems remains unclear. We studied the relationships between C and N dynamics in a pasture seeded to Lolium perenne after 8 years of elevated atmospheric CO₂ concentration (FACE) conditions. Fertilizer‐¹⁵N was applied at a rate of 140 and 560 kg N ha^2?1 y^2?1 and depleted ¹³C‐CO₂ was used to increase the CO₂ concentration to 60 Pa pCO₂. The ¹³C–¹⁵N dual isotopic tracer enabled us to study the dynamics of newly sequestered C and N in the soil by aggregate size and fractions of particulate organic matter (POM), made up by intra‐aggregate POM (iPOM) and free light fraction (LF). Eight years of elevated CO₂ did not increase total C content in any of the aggregate classes or POM fractions at both rates of N application. The fraction of new C in the POM fractions also remained largely unaffected by N fertilization. Changes in the fractions of new C and new N (fertilizer‐N) under elevated CO₂ were more pronounced between POM classes than between aggregate size classes. Hence, changes in the dynamics of soil C and N cycling are easier to detect in the POM fractions than in the whole aggregates. Within N treatments, fractions of new C and N in POM classes were highly correlated with more new C and N in large POM fractions and less in the smaller POM fractions. Isotopic data show that the microaggregates were derived from the macro‐aggregates and that the C and N associated with the microaggregates turned over slower than the C and N associated with the macroaggregates. There was also isotopic evidence that N immobilized by soil microorganisms was an important source of N in the iPOM fractions. Under low N availability, 3.04 units of new C per unit of fertilizer N were sequestered in the POM fractions. Under high N availability, the ratio of new C sequestered per unit of fertilizer N was reduced to 1.47. Elevated and ambient CO₂ concentrations lead to similar ¹⁵N enrichments in the iPOM fractions under both low and high N additions, clearly showing that the SOM‐N dynamics were unaffected by prolonged elevated CO₂ concentrations.     

Carbon sequestration in soil in a semi‐natural Miscanthus sinensis grassland and Cryptomeria japonica forest plantation in Aso,Kumamoto, Japan

Although Miscanthus sinensis grasslands (Misc‐GL) and Cryptomeria japonica forest plantations (Cryp‐FP) are proposed bioenergy feedstock systems, their relative capacity to sequester C may be an important factor in determining their potential for sustainable bioenergy production. Therefore, our objective was to quantify changes in soil C sequestration 47 years after a Misc‐GL was converted to a Cryp‐FP. The study was conducted on adjacent Misc‐GL and Cryp‐FP located on Mt. Aso, Kumamoto, Japan. After Cryp‐FP establishment, only the Misc‐GL continued to be managed by annual burning every March. Mass C and N, δ¹³C, and δ¹⁵N at 0–30 cm depth were measured in 5 cm increments. Carbon and N concentrations, C:N ratio, δ¹³C, and δ¹⁵N were measured in litter and/or ash, and rhizomes or roots. Although C input in Misc‐GL by M. sinensis was approximately 36% of that in Cryp‐FP by C. japonica, mean annual soil C sequestration in Misc‐GL (503 kg C ha^?1 yr^?1) was higher than that in Cryp‐FP (284 kg C ha^?1 yr^?1). This was likely the result of larger C input from aboveground litter to soil, C‐quality (C:N ratio and lignin concentration in aboveground litter) and possibly more recalcitrant C (charcoal) inputs by annual burning. The difference in soil δ¹⁵N between sites indicated that organic C with N had greater cycling between heterotrophic microbes and soil and produces more recalcitrant humus in Misc‐GL than in Cryp‐FP. Our data indicate that in terms of soil C sequestration, maintenance of Misc‐GL may be more advantageous than conversion to Cryp‐FP in Aso, Japan.     

长期垄作稻田腐殖质稳定碳同位素丰度(δ13C)分布特征

研究了四川盆地丘陵区连续16年垄（宽垄）作稻田土壤稳定碳库腐殖质组分的稳定碳同位素(δ¹³C)分布特征.结果表明： 稻田土壤有机碳含量为宽垄作＞垄作＞水旱轮作.腐殖质碳以胡敏素为主,占土壤碳含量的21%～30%,提取碳以胡敏酸为主,分别占土壤有机碳和腐殖质的17%～21%和38%～65%.土壤有机碳的δ¹³C值介于-27.9‰～-25.6‰,20～40 cm和0～5 cm土壤有机碳δ¹³C值之差约为1.9‰.土壤胡敏酸δ¹³C值比土壤有机碳低1‰～2‰,更接近于油菜和水稻秸秆及根系的δ¹³C值.土壤富里酸δ¹³C值分别较土壤有机碳和胡敏酸高2‰和4‰.耕作层和犁底层胡敏素δ¹³C值分别介于-23.7‰～-24.9‰和-22.6‰～-24.2‰,δ¹³C值的变化反映了耕层中腐殖质的新老混合现象.各有机组分δ¹³C值递减顺序为：胡敏素＞富里酸＞土壤有机碳＞稻草（油菜）残体＞胡敏酸.长期水稻种植有利于增加土壤有机碳含量,同时,耕作方式影响土壤腐殖质δ¹³C在耕作层和犁底层中的分布格局.     

Carbon sequestration potential in perennial bioenergy crops: the importance of organic matter inputs and its physical protection

To date, only few studies have compared the soil organic carbon (SOC) sequestration potential between perennial woody and herbaceous crops. The main objective of this study was to assess the effect of perennial woody (poplar, black locust, willow) and herbaceous (giant reed, miscanthus, switchgrass) crops on SOC stock and its stabilization level after 6 years from plantation on an arable field. Seven SOC fractions related to different soil stabilization mechanisms were isolated by a combination of physical and chemical fractionation methods: unprotected (cPOM and fPOM), physically protected (iPOM), physically and chemically protected (HC‐μs + c), chemically protected (HC‐ds + c), and biochemically protected (NHC‐ds + c and NHC‐μs + c). The continuous C input to the soil and the minimal soil disturbance increased SOC stocks in the top 10 cm of soil, but not in deeper soil layers (10–30; 30–60; and 60–100 cm). In the top soil layer, greater SOC accumulation rates were observed under woody species (105 g m^?2 yr^‐1) than under herbaceous ones (71 g m^?2 yr^‐1) presumably due to a higher C input from leaf‐litter. The conversion from an arable maize monoculture to perennial bioenergy crops increased the organic C associated to the most labile organic matter (POM) fractions, which accounted for 38% of the total SOC stock across bioenergy crops, while no significant increments were observed in more recalcitrant (silt‐ and clay‐sized) fractions, highlighting that the POM fractions were the most prone to land‐use change. The iPOM fraction increased under all perennial bioenergy species compared to the arable field. In addition, the iPOM was higher under woody crops than under herbaceous ones because of the additional C inputs from leaf‐litter that occurred in the former. Conversion from arable cropping systems to perennial bioenergy crops can effectively increase the SOC stock and enlarge the SOC fraction that is physically protected within soil microaggregates.     

On fertilizer‐induced soil carbon sequestration in China's croplands

Applications of fertilizer, often thought to enhance carbon sequestration in agricultural soils, are of no value to the mitigation of climate change if the carbon dioxide released during the production and distribution of nitrogen fertilizer exceeds the incremental carbon storage in soils from its use. Nitrogen fertilizer is also a source of the greenhouse gas nitrous oxide. The recent analysis of carbon sequestration in cropland soils of China does not apply these ‘discounts’ to the global warming mitigation expected from greater use of fertilizer; doing so would likely eliminate all the climate benefits of the postulated enhanced carbon sequestration.     

Indirect effects of soil moisture reverse soil C sequestration responses of a spring wheat agroecosystem to elevated CO2

Increased plant productivity under elevated atmospheric CO₂ concentrations might increase soil carbon (C) inputs and storage, which would constitute an important negative feedback on the ongoing atmospheric CO₂ rise. However, elevated CO₂ often also leads to increased soil moisture, which could accelerate the decomposition of soil organic matter, thus counteracting the positive effects via C cycling. We investigated soil C sequestration responses to 5 years of elevated CO₂ treatment in a temperate spring wheat agroecosystem. The application of ¹³C‐depleted CO₂ to the elevated CO₂ plots enabled us to partition soil C into recently fixed C (C_new) and pre‐experimental C (C_old) by ¹³C/¹²C mass balance. Gross C inputs to soils associated with C_new accumulation and the decomposition of C_old were then simulated using the Rothamsted C model ‘RothC.’ We also ran simulations with a modified RothC version that was driven directly by measured soil moisture and temperature data instead of the original water balance equation that required potential evaporation and precipitation as input. The model accurately reproduced the measured C_new in bulk soil and microbial biomass C. Assuming equal soil moisture in both ambient and elevated CO₂, simulation results indicated that elevated CO₂ soils accumulated an extra ～40–50 g C m^?2 relative to ambient CO₂ soils over the 5 year treatment period. However, when accounting for the increased soil moisture under elevated CO₂ that we observed, a faster decomposition of C_old resulted; this extra C loss under elevated CO₂ resulted in a negative net effect on total soil C of ～30 g C m^?2 relative to ambient conditions. The present study therefore demonstrates that positive effects of elevated CO₂ on soil C due to extra soil C inputs can be more than compensated by negative effects of elevated CO₂ via the hydrological cycle.     

Losses of soil carbon by converting tropical forest to plantations: erosion and decomposition estimated by δ13C

Indonesia lost more tropical forest than all of Brazil in 2012, mainly driven by the rubber, oil palm, and timber industries. Nonetheless, the effects of converting forest to oil palm and rubber plantations on soil organic carbon (SOC) stocks remain unclear. We analyzed SOC losses after lowland rainforest conversion to oil palm, intensive rubber, and extensive rubber plantations in Jambi Province on Sumatra Island. The focus was on two processes: (1) erosion and (2) decomposition of soil organic matter. Carbon contents in the Ah horizon under oil palm and rubber plantations were strongly reduced up to 70% and 62%, respectively. The decrease was lower under extensive rubber plantations (41%). On average, converting forest to plantations led to a loss of 10 Mg C ha^?1 after about 15 years of conversion. The C content in the subsoil was similar under the forest and the plantations. We therefore assumed that a shift to higher δ¹³C values in plantation subsoil corresponds to the losses from the upper soil layer by erosion. Erosion was estimated by comparing the δ¹³C profiles in the soils under forest and under plantations. The estimated erosion was the strongest in oil palm (35 ± 8 cm) and rubber (33 ± 10 cm) plantations. The ¹³C enrichment of SOC used as a proxy of its turnover indicates a decrease of SOC decomposition rate in the Ah horizon under oil palm plantations after forest conversion. Nonetheless, based on the lack of C input from litter, we expect further losses of SOC in oil palm plantations, which are a less sustainable land use compared to rubber plantations. We conclude that δ¹³C depth profiles may be a powerful tool to disentangle soil erosion and SOC mineralization after the conversion of natural ecosystems conversion to intensive plantations when soils show gradual increase of δ¹³C values with depth.     

Carbon sequestration rates in organic layers of boreal and temperate forest soils — Sweden as a case study

Aim The aim of this work was to estimate C sequestration rates in the organic matter layer in Swedish forests. Location The region encompassed the forested area (23 × 10⁶ ha) of Sweden ranging from about 55° N to 69° N. Methods We used the concept of limit values to estimate recalcitrant litter remains, and combined it with amount of litter fall. Four groups of tree species were identified (pine, spruce, birch and ‘other deciduous species’). Annual actual evapotranspiration (AET) was estimated for 5 × 5 km grids covering Sweden. For each grid, data of forested area and main species composition were available. The annual input of foliar litter into each grid was calculated using empirical relationships between AET and foliar litter fall in the four groups. Litter input was combined with average limit values for decomposition for the four groups of litter, based on empirical data. Finally, C sequestration rate was calculated using a constant factor of the C concentration in the litter decomposed to the limit value, thus forming soil organic matter (SOM). Results We obtained a value of 4.8 × 10⁶ metric tons of C annually sequestered in SOM in soils of mature forests in Sweden, with an average of 180 kg ha^?1 and a range from 40 to 410 kg ha^?1. Norway spruce forests accumulated annually an average of 200 kg C ha^?1. The pine and birch groups had an average of 150 kg ha^?1 and for the group of other deciduous trees, which is limited to south Sweden, the C sequestration was around 400 kg ha^?1. Conclusions There is a clear C sequestration gradient over Sweden with the highest C sequestration in the south‐west, mainly corresponding to the gradient in litter fall. The limit‐value method appears useful for scaling up to a regional level to describe the C sequestration in SOM. A development of the limit value approach in combination with process‐orientated dynamic models may have a predictive value.     

半湿润农田生态系统长期施肥对土壤团聚体中有机氮组分的影响

通过对黄土高原半湿润农田生态系统25年的田间肥料定位试验,研究了长期不同施肥模式对土壤有机氮组分及其在各级团聚体中分布的影响.结果表明:长期施肥对水解氨态氮、水解未知氮在土壤各级团聚体中分布的影响最大,对氨基酸态氮的分布有一定影响,而对氨基糖态氮分布的影响较小.长期施用化肥和有机肥能有效地影响水解氨态氮和水解未知氮与团聚体的结合作用,而氨基糖态氮在土壤氮循环转化过程中具有较强的稳定性.长期施肥条件下土壤水解全氮与有机碳、全氮以及团聚体分形维数均呈极显著正相关,其r分别为0.942,0.981,0.910(P<0.001),说明土壤有机氮组分对土壤团聚体的形成和性质具有显著影响.相关分析表明,土壤全氮或有机质对1～2mm和0.25～1mm土壤团聚体中各有机氮组分的影响较大.     

毛乌素沙地沙漠化逆转过程土壤颗粒固碳效应

为揭示毛乌素沙地沙漠化逆转过程中土壤颗粒的固碳效应,选择陕北榆林治沙区从流沙地、半固定沙地到林龄为20～55年生的灌木和20～50年生的乔木固沙林地,采用物理分组法分析了土壤砂粒、粉粒、黏粒结合碳的演变特征和累积速率.结果表明: 对比流沙地,土壤总有机碳及各颗粒碳含量在两种固沙林地均呈显著增加趋势,并以表层0～5 cm土壤碳含量增幅最高.从流沙地到55年生灌木和50年生乔木固沙林地,0～5 cm土层砂粒碳密度增速均为0.05 Mg·hm^-2·a^-1,粉粒碳密度增速分别为0.05和0.08 Mg·hm^-2·a^-1,而黏粒碳密度增速分别为0.02和0.03 Mg·hm^-2·a^-1.0～20 cm土层,两种林地各颗粒碳密度增速平均为0～5 cm土层的2.1倍.按此增速到50～55年生的固沙林地时,两种林地0～20 cm土层的砂粒碳、粉粒碳和黏粒碳密度分别比流沙地平均提高6.7、18.1、4.4倍,并且颗粒碳对总有机碳的累积贡献率平均为粉粒碳(39.7%)≈砂粒碳(34.6%)>黏粒碳(25.6%).综上,毛乌素沙地沙漠化逆转过程土壤颗粒均表现出显著的固碳效应,且以砂粒和粉粒为主要固碳组分.     

土壤团聚体固碳的研究方法

增加土壤有机碳含量对维持土壤肥力和农业可持续发展,缓解温室气体增加和全球气候变化的影响具有重要意义.土壤团聚体是土壤的重要组成部分,影响着土壤的各种物理化学性质.土壤团聚体对土壤有机碳的物理保护是土壤碳固定的重要机制.本文综述了土壤团聚体对有机碳的固定作用,土壤团聚体固碳机制研究的经典方法和现代常规方法,并且针对研究中存在的问题探讨了今后的发展趋势.     

Annual burning of a tallgrass prairie inhibits C and N cycling in soil,increasing recalcitrant pyrogenic organic matter storage while reducing N availability

Grassland ecosystems store an estimated 30% of the world's total soil C and are frequently disturbed by wildfires or fire management. Aboveground litter decomposition is one of the main processes that form soil organic matter (SOM). However, during a fire biomass is removed or partially combusted and litter inputs to the soil are substituted with inputs of pyrogenic organic matter (py‐OM). Py‐OM accounts for a more recalcitrant plant input to SOM than fresh litter, and the historical frequency of burning may alter C and N retention of both fresh litter and py‐OM inputs to the soil. We compared the fate of these two forms of plant material by incubating ¹³C‐ and ¹⁵N‐labeled Andropogon gerardii litter and py‐OM at both an annually burned and an infrequently burned tallgrass prairie site for 11 months. We traced litter and py‐OM C and N into uncomplexed and organo‐mineral SOM fractions and CO₂ fluxes and determined how fire history affects the fate of these two forms of aboveground biomass. Evidence from CO₂ fluxes and SOM C:N ratios indicates that the litter was microbially transformed during decomposition while, besides an initial labile fraction, py‐OM added to SOM largely untransformed by soil microbes. Additionally, at the N‐limited annually burned site, litter N was tightly conserved. Together, these results demonstrate how, although py‐OM may contribute to C and N sequestration in the soil due to its resistance to microbial degradation, a long history of annual removal of fresh litter and input of py‐OM infers N limitation due to the inhibition of microbial decomposition of aboveground plant inputs to the soil. These results provide new insight into how fire may impact plant inputs to the soil, and the effects of py‐OM on SOM formation and ecosystem C and N cycling.     

Carbon bio‐sequestration within the phytoliths of economic bamboo species

The rates of carbon bio‐sequestration within silica phytoliths of the leaf litter of 10 economically important bamboo species indicates that (a) there is considerable variation in the content of carbon occluded within the phytoliths (PhytOC) of the leaves between different bamboo species, (b) this variation does not appear to be directly related to the quantity of silica in the plant but rather the efficiency of carbon encapsulation by the silica. The PhytOC content of the species under the experimental conditions ranged from 1.6% to 4% of the leaf silica weight. The potential phytolith carbon bio‐sequestration rates in the leaf‐litter component for the bamboos ranged up to 0.7 tonnes of carbon dioxide (CO₂) equivalents (t‐e‐CO₂) ha^?1 yr^?1 for these species. Assuming a median phytolith carbon bio‐sequestration yield of 0.36 t‐e‐CO₂ ha^?1 yr^?1, the global potential for bio‐sequestration via phytolith carbon (from bamboo and/or other similar grass crops) is estimated to be ～1.5 billion t‐e‐CO₂ yr^?1, equivalent to 11% of the current increase in atmospheric CO₂. The data indicate that the management of vegetation such as bamboo forests to maximize the production of PhytOC has the potential to result in considerable quantities of securely bio‐sequestered carbon.     

秸秆生物质炭对土壤结构体与活性碳分布、转化酶动力学参数及小麦生长的影响

为探明生物质炭输入土壤后与水稳性团聚体的作用机理,及对土壤活性碳库、微生物活性、作物生长的促进作用。以生物质炭和秸秆碳为外源碳材料,两者等碳量添加条件下,在小麦不同生育期采用湿筛法、电镜扫描、酶动力学方程等方法,测定土壤结构、酶活性、活性有机碳、及小麦产量等指标的响应情况。结果表明:生物质炭添加下,土壤0.25 mm大颗粒团聚体显著增加了16.9%—45.8%;土壤结构体分布以土壤大颗粒团聚体为主,含量约为小颗粒团聚体的2倍。生物质炭少量或适量添加(0.8%或2.4%),土壤微生物量碳增加了9.7%—33.6%,溶解性有机碳降低了12.6%—27.5%;而过量添加下(8%),则呈现正好相反的规律。生物质炭输入下,转化酶动力学参数Km、Vmax、k分别下降了17.3%、17.0%、16.1%。生物质炭适量添加下,小麦产量增加了14.9%—19.1%;秸秆3%和10%添加水平下,小麦产量则下降了37.3%和90.1%。整体而言,生物质炭通过增加0.25 mm大颗粒团聚体的形成及土壤转化酶的活性来促进土壤结构和作物的生长的改善,且生物质炭在2.4%水平下的生物质炭添加改善作用最为突出,有助于研究区域过剩秸秆资源的资源化利用。     

Internal motion time scales of a small, highly stable and disulfide-rich protein: A 15N, 13C NMR and molecular dynamics study

Motions of the backbone CH and threonine CH bonds of toxin were investigated using natural abundance 13C NMR and molecular dynamics. Measurement of the 13C longitudinal and transverse relaxation rates employed ACCORDION techniques together with coherence selection by pulsed field gradients and sensitivity enhancement through the use of preservation of equivalent pathway, thus allowing a considerable reduction of the required spectrometer time. 13C R1, R2, 1H13C NOE were obtained, as well as the variations of R1(90° ) as a function of the rf field strength. These data were compared to those recorded by 1H and 15N NMR on a labelled sample of the toxin [Guenneugues et al. (1997) Biochemistry, 36, 16097–16108]. Both sets of data showed that picosecond to nanosecond time scale motions are well correlated to the secondary structure of the protein. This was further reinforced by the analysis of a 1 ns molecular dynamics simulation in water. Several CH and threonine CH experimentally exhibit fast motions with a correlation time longer than 500 ps, that cannot be sampled along the simulation. In addition, the backbone exhibits motions on the microsecond to millisecond time scale on more than half of its length. Thus, toxin , a highly stable protein (Tm=75°C at acidic pH) containing 61 amino acids and 4 disulfides, shows important internal motions on time scales ranging from 0.1–0.5 ps, to 10–100 ps, 1 ns, and about 30 s to 10 ms.     

Changes in soil carbon stocks under perennial and annual bioenergy crops

Bioenergy crops are expected to provide biomass to replace fossil resources and reduce greenhouse gas emissions. In this context, changes in soil organic carbon (SOC) stocks are of primary importance. The aim of this study was to measure changes in SOC stocks in bioenergy cropping systems comparing perennial (Miscanthus × giganteus and switchgrass), semi‐perennial (fescue and alfalfa), and annual (sorghum and triticale) crops, all established after arable crops. The soil was sampled at the start of the experiment and 5 or 6 years later. SOC stocks were calculated at equivalent soil mass, and δ¹³C measurements were used to calculate changes in new and old SOC stocks. Crop residues found in soil at the time of SOC measurements represented 3.5–7.2 t C ha^?1 under perennial crops vs. 0.1–0.6 t C ha^?1 for the other crops. During the 5‐year period, SOC concentrations under perennial crops increased in the surface layer (0–5 cm) and slightly declined in the lower layers. Changes in δ¹³C showed that C inputs were mainly located in the 0–18 cm layer. In contrast, SOC concentrations increased over time under semi‐perennial crops throughout the old ploughed layer (ca. 0–33 cm). SOC stocks in the old ploughed layer increased significantly over time under semi‐perennials with a mean increase of 0.93 ± 0.28 t C ha^?1 yr^?1, whereas no change occurred under perennial or annual crops. New SOC accumulation was higher for semi‐perennial than for perennial crops (1.50 vs. 0.58 t C ha^?1 yr^?1, respectively), indicating that the SOC change was due to a variation in C input rather than a change in mineralization rate. Nitrogen fertilization rate had no significant effect on SOC stocks. This study highlights the interest of comparing SOC changes over time for various cropping systems.