19th century woodland structure controls stand-scale epiphyte diversity in present-day Scotland

Axioms developed from island biogeography theory (i.e. species–area relationships, effects of fragmentation and isolation) are central to the development of conservation strategy. Within this context, the 'extinction debt' hypothesis brings into question an often assumed relationship between species richness and present-day spatial habitat structure (i.e. extent, fragmentation), suggesting instead that the richness and composition of biological communities may lag behind spatial changes in habitat. We examined evidence for an extinction debt among epiphytic lichens, a highly diverse biological group of significant conservation concern. Using sites in Scotland, we compared epiphyte species richness in smaller-scale habitat units (aspen stands) to larger-scale woodland structure (extent and fragmentation) measured at two spatial scales (1 km² and 4 km²) and for two timeframes, modern (1990s to 2000s) and historic (1860s to 1880s). Species richness was positively related to woodland extent and negatively related to woodland fragmentation; however, richness was explained better by historic woodland structure at a 1-km² scale, than by modern woodland structure. The results indicate: (1) a coupling of stand-scale epiphyte assembly and dynamics of the wider woodland ecosystem, and (2) a significant lag in the response of epiphyte species richness to habitat spatial structure. However, the effect of spatial habitat structure is different between species groups with contrasting traits. The effect of decreasing woodland extent on epiphyte richness is generally more severe for microlichens (comprising a greater number of rare and specialist species) than the more generalist macrolichens.     

Changing climate and historic‐woodland structure interact to control species diversity of the ‘Lobarion’ epiphyte community in Scotland

Question: How will changing climate and habitat structure interact to control the species diversity of lichen epiphytes? Location: Scotland. Method: Species richness (=diversity) of the epiphyte lichen community known as Lobarion (named after Lobaria pulmonaria) was quantified for 94 Populus tremula stands across Scotland, and compared in a predictive model to seven climate variables and eight measures of woodland structure. An optimum model was selected and used to project Lobarion diversity over the geographic range of the study area, based on IPCC climate change scenarios and hypothetical shifts in woodland structure. Results: Species diversity of the Lobarion community was best explained by three climate variables: (1) average annual temperature; (2) autumn and winter precipitation; in combination with (3) historic‐woodland extent. Projections indicate a positive effect of predicted climate change on Lobarion diversity, consistent with the physiological traits of cyanobac‐terial lichens comprising the Lobarion. However, the general response to climate is modified significantly by the effect on diversity of historic‐woodland extent. Conclusions: Historic‐woodland extent may exert an important control over local climate, as well as impacting upon the metapopulation dynamics of species in the Lobarion. In particular, a temporal delay in the response of Lobarion species to changed woodland structure is critical to our understanding of future climate change effects. Future Lobarion diversity (e.g. in the 2050s) may depend upon the interaction of contemporary climate (e.g. 2050s climate) and historic habitat structure (e.g. 1950s woodland extent). This is supported by previous observations for an extinction debt amongst lichen epiphytes, but suggests an extension of simple climate‐response models is necessary, before their wider application to lichen epiphyte diversity.     

基于功能性状的毛乌素沙地不同演替阶段适生植物筛选

沙地生态系统修复是恢复生态学研究的热点问题,适生植物筛选是修复的关键。植物功能性状反映了植物在不同环境中的生存策略,探究沙地植物功能性状及其与环境之间的关系,有助于筛选用于植被恢复的物种,为保护沙地生态系统提供理论依据。以毛乌素沙地为研究区,分析了1983-2015年间沙地典型飞播样地群落演替特征及其对环境因子的响应,建立基于10个植物功能性状的毛乌素沙地潜在种库,进一步筛选飞播恢复下沙地不同演替阶段的适生植物。研究表明:(1)飞播恢复下的毛乌素沙地植物群落分为三个演替阶段:固沙先锋物种群落、沙生植物为主的杂类草群落、中生植物为主的杂类草群落。(2)土壤因子是群落演替的主要驱动力,其中土壤全氮、土壤总有机碳、土壤硝态氮是影响群落演替的关键因素。(3)基于功能性状筛选出29种适生物种用于植被恢复,演替第一阶段可用雾冰藜、猪毛菜等,演替第二阶段可用拂子茅、无芒隐子草等,演替第三阶段可用草地风毛菊、猪毛蒿等。通过物种功能性状特征可以快速选择适合沙地退化生态系统修复的候选物种,为植被恢复提供了一定的理论支持。     

喀斯特森林不同演替阶段植物群落物种多样性、功能性状、化学计量及其关联

探讨森林植物群落物种多样性、功能性状与化学计量特征及其内在关联,有助于构建结构-性状-功能的研究脉络,深入理解生态系统的过程与功能,为群落结构优化配置和调控提供科学依据。以贵州喀斯特高原峡谷区森林草灌、灌木、灌乔和乔木4个演替阶段的植物群落为对象,通过群落学调查和植物功能性状、生态化学计量测度,研究其物种多样性、功能性状和化学计量特征及其互作关系。结果表明:(1)乔木阶段的Shannon-Wiener指数与Pielou均匀度指数均为最高,依次达8.62、2.41,表明伴随着群落演替,物种分布的均匀程度增加。(2)植物群落物种多样性指数之间仅Margalef丰富度指数与Simpson优势度指数未呈显著相关(-0.644),其余均为显著或极显著相关关系,表明物种多样性指数之间存在较强的促进或抑制作用。(3)叶片厚度与其余指标,以及群落物种多样性指数与功能性状、化学计量之间均未呈显著相关,比叶面积(SLA)仅与土壤N∶P呈显著正相关(0.742),表明群落物种多样性、功能性状和生态化学计量特征之间的相关性较弱。(4)SLA为灌木阶段的272.13 cm2/g为最大,δ13C值在演替后期略高,草灌、灌木阶段倾向于受N、P共同限制,说明随演替进展,植物的适应策略和资源利用对策等均发生了一定的调整,表明植物和环境之间存在较强的协变关系。(5)该区森林培育时,应构建完整的乔木、灌木和草本层片,提高生态系统对养分矿化、转化和循环等的自调控能力。     

长白山不同演替阶段森林植物功能性状及其与地形因子间的关系

植物功能性状是近年来生态学研究的热点。不同种群功能性状的差异决定竞争优势,导致群落结构和性质发生改变,进而演替。以长白山森林演替过程中4个阶段的典型群落为研究对象,分析了长白山地区森林不同层次优势种的茎叶功能性状之间的关系、功能性状与地形因子的关系,并对不同演替阶段群落功能性状进行了比较。结果发现,比叶面积(SLA)与叶氮浓度(LNC)和茎磷浓度(SPC)正相关,与叶干物质质量(LDMC)负相关;叶厚度(LT)与LDMC负相关;LNC与LPC、SNC和LDMC呈正相关;茎氮浓度(SNC)与茎磷浓度(SPC)正相关;茎组织密度(STD)与LNC、SNC正相关。通过灰色关联度分析发现,海拔对SLA、LNC、LPC、STD、SPC影响最大;坡向对于LT、LDMC影响最大;坡位对SNC影响最大。各演替群落间的乔木层功能性状均有显著差异,灌木层的功能性状无显著差异,而草本层除了LDMC、LPC、SNC有显著差异外,其它指标均无显著差异;SLA、STD、LNC随演替的进行呈现明显增加趋势,LDMC、LPC随演替呈减少的趋势。LDMC和SLA是能体现群落演替差异的主要功能性状。     

Molecular and functional diversity in soil micro-organisms

Traditional approaches to the study of microbial diversity have relied on laboratory cultivation of isolates from natural environments and identification by classical techniques, including analysis of morphology, physiological characteristics and biochemical properties. These approaches provide information on fine-scale diversity but suffer from bias, resulting from the media and cultivation conditions employed, and from the inability to grow and isolate significant proportions of natural communities in the laboratory. An alternative approach is the amplification of ribosomal RNA and functional genes from nucleic acids extracted directly from environmental samples, with subsequent analysis by `fingerprinting' methods or by sequencing and phylogenetic analysis. This approach avoids the need for laboratory cultivation and has provided major insights into species and functional diversity of bacterial and archaeal populations. This article reviews molecular approaches to the characterisation of prokaryote diversity in natural environments, their more recent application to fungal diversity and the advantages and limitations of molecular analyses.     

延河流域植物群落功能性状对环境梯度的响应

研究群落水平上的植物功能性状特征及其随环境梯度的变化规律,对认识不同环境梯度下植物群落的形成及其对环境的适应机制具有重要意义。以延河流域不同环境梯度下的稳定的自然植物群落为对象,测量了植物群落组成物种的叶厚度、比叶面积、叶组织密度、比根长、根组织密度、单位质量叶氮含量、单位质量根氮含量、种子质量、种子体积等9个性状,然后以物种重要值为基础加权平均得到各个性状在群落水平上的平均值(即群落性状值);以现有的环境因子栅格图为基础,利用ArcGIS提出各群落对应的环境因子值,同时测定各个群落的土壤水分,分析群落各性状值与环境因子的关系,并建立关系模型。结果表明:在群落水平上,9个植物功能性状分别与13个环境因子存在不同程度的相关性,同时这9个植物功能性状对8个环境因子梯度(土壤水分、年4-10月平均气温、年7-9月总降雨量、降雨季节变化、年平均降雨量、年平均蒸发量、坡度、坡向)的响应特征较好,不同植物功能性状间具有较好相关性。群落水平上植物功能性状及其组合随环境梯度的规律性变化,反映了延河流域植被群落构建过程中环境对功能性状的筛选效应。该研究结果对该区的植被恢复重建的物种选择及植被布局规划具有重要的实践意义。     

Synergistic and antagonistic effects of land use and non‐native species on community responses to climate change

Climate change, land‐use change and introductions of non‐native species are key determinants of biodiversity change worldwide. However, the extent to which anthropogenic drivers of environmental change interact to affect biological communities is largely unknown, especially over longer time periods. Here, we show that plant community composition in 996 Swedish landscapes has consistently shifted to reflect the warmer and wetter climate that the region has experienced during the second half of the 20th century. Using community climatic indices, which reflect the average climatic associations of the species within each landscape at each time period, we found that species compositions in 74% of landscapes now have a higher representation of warm‐associated species than they did previously, while 84% of landscapes now host more species associated with higher levels of precipitation. In addition to a warmer and wetter climate, there have also been large shifts in land use across the region, while the fraction of non‐native species has increased in the majority of landscapes. Climatic warming at the landscape level appeared to favour the colonization of warm‐associated species, while also potentially driving losses in cool‐associated species. However, the resulting increases in community thermal means were apparently buffered by landscape simplification (reduction in habitat heterogeneity within landscapes) in the form of increased forest cover. Increases in non‐native species, which generally originate from warmer climates than Sweden, were a strong driver of community‐level warming. In terms of precipitation, both landscape simplification and increases in non‐natives appeared to favour species associated with drier climatic conditions, to some extent counteracting the climate‐driven shift towards wetter communities. Anthropogenic drivers can act both synergistically and antagonistically to determine trajectories of change in biological communities over time. Therefore, it is important to consider multiple drivers of global change when trying to understand, manage and predict biodiversity in the future.     

Changes in plant taxonomic and functional diversity patterns following treeline advances in the South Urals

Background: Treeline ecotones represent environmental boundaries that fluctuate in space and time and thus induce changes in plant taxonomic and functional diversity.

Aims: To study changes through time in taxonomic and functional plant diversity patterns along the treeline ecotone.

Methods: In 2002, vegetation was sampled along a gradient from upper montane forest to the treeline–alpine transition in the South Ural Mountains, Russia. In 2014, vegetation was resampled and plant functional traits were collected. We studied spatial and temporal changes in plant species composition, functional composition and functional diversity.

Results: Species composition and diversity changed along the elevational gradient. The functional composition in height, leaf area, specific leaf area and leaf nitrogen content decreased with elevation, whereas functional composition of leaf carbon content increased. We found a temporal shift towards shorter plants with smaller leaves in treeline sites. Functional richness varied in several traits along the elevational gradient, while functional dispersion showed a trend towards increased functional dispersion in height, specific leaf area and leaf nitrogen in the treeline–tundra transition.

Conclusions: Tree encroachment across the treeline ecotone has resulted in a shift in plant species relative abundances and functional diversity, possibly affecting plant community assembly patterns.     

Contrasting changes in the abundance and diversity of North American bird assemblages from 1971 to 2010

Although it is generally recognized that global biodiversity is declining, few studies have examined long‐term changes in multiple biodiversity dimensions simultaneously. In this study, we quantified and compared temporal changes in the abundance, taxonomic diversity, functional diversity, and phylogenetic diversity of bird assemblages, using roadside monitoring data of the North American Breeding Bird Survey from 1971 to 2010. We calculated 12 abundance and diversity metrics based on 5‐year average abundances of 519 species for each of 768 monitoring routes. We did this for all bird species together as well as for four subgroups based on breeding habitat affinity (grassland, woodland, wetland, and shrubland breeders). The majority of the biodiversity metrics increased or remained constant over the study period, whereas the overall abundance of birds showed a pronounced decrease, primarily driven by declines of the most abundant species. These results highlight how stable or even increasing metrics of taxonomic, functional, or phylogenetic diversity may occur in parallel with substantial losses of individuals. We further found that patterns of change differed among the species subgroups, with both abundance and diversity increasing for woodland birds and decreasing for grassland breeders. The contrasting changes between abundance and diversity and among the breeding habitat groups underscore the relevance of a multifaceted approach to measuring biodiversity change. Our findings further stress the importance of monitoring the overall abundance of individuals in addition to metrics of taxonomic, functional, or phylogenetic diversity, thus confirming the importance of population abundance as an essential biodiversity variable.     

南四湖沉水植物物种多样性和功能多样性对水深梯度的响应

从物种多样性和功能多样性探讨沉水植物群落对水深的响应可深刻揭示水深对群落构建的影响机制。以南四湖不同水深沉水植物群落为研究对象,对比分析了群落的9个加权功能性状（株高、茎分支数、茎节数、茎直径、根长、根围直径、生物量分配比、比叶面积、植物体磷含量）、5个物种多样性指数（Berger-Parker生态优势度指数、Margalef丰富度指数、Simpson多样性指数、Shannon-Wiener多样性指数和Pielou均匀度指数）和5个功能多样性指数（功能丰富度FRic指数、功能均匀度FEve指数、功能离散度FDiv指数、功能分散度FDis指数和二次熵Rao指数）以及物种多样性和功能多样性关系对水深的响应规律。研究结果表明：（1）水深可显著改变群落株高、根长、根围直径、比叶面积、生物量分配比和植物体磷含量6个加权功能性状;群落茎分支数、茎节数和茎直径3个加权功能性状对水深变化无显著响应;（2）水深可显著影响群落物种多样性和功能多样性,中等水深处沉水植物群落具有较高的Margalef丰富度指数、Shannon-Wiener多样性指数、Berger-Parker生态优势度指数、Pielou均匀度指数以及功能丰富度FRic指数、功能均匀度FEve指数、功能离散度FDis指数、二次熵Rao指数;（3）水深可改变5个物种多样性指数与功能丰富度FRic指数、功能均匀度FEve指数、功能离散度FDiv指数3个功能多样性指数间的相关关系,但对5个物种多样性指数与功能离散度FDis指数、二次熵Rao指数2个功能多样性指数间的相关关系无显著影响。研究结论为：群落不同测度的物种多样性和功能多样性指数及其相关关系对水深变化的响应迥异,在探讨水深对沉水植物群落构建的影响机制时应从多个方面综合考量。     

Environmental DNA reveals a mismatch between diversity facets of Amazonian fishes in response to contrasting geographical,environmental and anthropogenic effects

Freshwater ecosystems are among the most endangered ecosystem in the world. Understanding how human activities affect these ecosystems requires disentangling and quantifying the contribution of the factors driving community assembly. While it has been largely studied in temperate freshwaters, tropical ecosystems remain challenging to study due to the high species richness and the lack of knowledge on species distribution. Here, the use of eDNA-based fish inventories combined to a community-level modelling approach allowed depicting of assembly rules and quantifying the relative contribution of geographic, environmental and anthropic factors to fish assembly. We then used the model predictions to map spatial biodiversity and assess the representativity of sites surveyed in French Guiana within the EU Water Framework Directive (WFD) and highlighted areas that should host unique freshwater fish assemblages. We demonstrated a mismatch between the taxonomic and functional diversity. Taxonomic assemblages between but also within basins were mainly the results of dispersal limitation resulting from basin isolation and natural river barriers. Contrastingly, functional assemblages were ruled by environmental and anthropic factors. The regional mapping of fish diversity indicated that the sites surveyed within the EU WFD had a better representativity of the regional functional diversity than taxonomic diversity. Importantly, we also showed that the assemblages expected to be the most altered by anthropic factors were the most poorly represented in terms of functional diversity in the surveyed sites. The predictions of unique functional and taxonomic assemblages could, therefore, guide the establishment of new survey sites to increase fish diversity representativity and improve this monitoring program.