What cell lineages tell us about the evolution of spiralia remains to be seen

Abstract.— Cell-lineage trees may contain information about spiralian phylogeny, as proposed by Guralnick and Lind-berg (2001). Here we discuss this possibility further and conclude that the cell-division pattern must be known in greater detail and the coding methods refined before a possible phylogenetic signal can be identified.     

DISTINGUISHING CAUSES OF VIRULENCE EVOLUTION: REPLY TO ALIZON AND MICHALAKIS

In a recent study of the symbiosis between bacteria and plasmids, the available evidence suggests that experimental evolution of plasmid virulence was primarily driven by within‐host competition caused by superinfection. The data do not exclude the possibility, however, that a trade‐off between virulence and infectious transmission to uninfected bacteria also played a minor role.     

THE EVOLUTION OF EARLY HOMO: A REPLY TO SCOTT

Scott presents a welcome reply to our article, “A single lineage in early Pleistocene Homo” (Van Arsdale and Wolpoff 2012 ). However, Scott's reply mischaracterizes and fails to directly address the hypothesis of a single lineage that we test. Additionally, the approach taken by Scott fails to replicate the methods used in our analysis. As Scott himself suggests, our null hypothesis of a single evolving lineage in early Homo remains without refutation. Although many evolutionary scenarios might explain the complex pattern of variation present in the early Homo fossil record, the most parsimonious remains that of a single lineage displaying evolutionary change over time.     

DATA AND DATA INTERPRETATION IN THE STUDY OF LIMB EVOLUTION: A REPLY TO GALIS ET AL. ON THE REEVOLUTION OF DIGITS IN THE LIZARD GENUS BACHIA

Galis and collaborators (2010) claim that our recent paper ( Kohlsdorf and Wagner 2006 ), presenting statistical evidence for the reevolution of digits in the genus Bachia, may be flawed. Their reanalysis of the data does not support the possibility of a reevolution of digits and the authors also argue that such a reevolution would be implausible on functional and developmental grounds. In response, we reanalyzed our data with additional outgroup species. Our results differ from the one published in 2006, but this incongruence is not statistically significant. In contrast, the hypothesis presented by Galis et al. is significantly worse. An analysis of digit number evolution, using novel techniques to test for irreversibility of character loss ( Goldberg and Igic 2008 ), confirmed our original conclusion that there is strong evidence for reevolution of digits in Bachia. We also point out that this result is not in conflict with the hypothesis by Galis and Metz (2001) that mutations affecting the initial digit patterning are associated with strong negative pleiotropic effects and thus unlikely to be fixed in evolution. An important avenue of future research will be to directly test whether reevolved digits develop from conserved digit condensations retained after digit loss.     

EVOLUTION IN A PUTATTVELY ANCIENT ASEXUAL APHID LINEAGE: RECOMBINATION AND RAPID KARYOTYPE CHANGE

Ancient asexual lineages are of great potential significance for understanding the evolutionary biology of sex, but their existence is controversial. In part, this is because claims of ancient asexuality have rested on negative evidence—a mere absence of evidence for sexuality in a taxon. M. Meselson has suggested a method, discussed by Judson and Normark (1996) and by Birky (1996), that has the potential to uncover positive evidence of ancient asexuality. Phylogenetic relationships between alleles and interallelic divergences are predicted to be very different in diploid lineages that lack recombination from those in diploid lineages that undergo recombination. I have applied Meselson's method to the putatively ancient asexual aphid tribe Tramini (Homoptera: Aphidoidea: Lachnidae), using the intron-bearing nuclear protein-coding gene elongation factor 1α (EF-1α). I found heterozygosities much lower than intraspecific divergences, indicating that some recombination has occurred, but not discriminating between recombination within an asexual lineage (automixis or mitotic recombination) and outcrossing sex. Species of Tramini (especially in the genus Trama) typically have highly structurally heterozygous karyotypes that appear to be incompatible with regular successful meiosis, and have very high levels of karyotype variability within species. I found very high levels of karyotype variability within lineages with identical EF-1α and mitochondrial (cytochrome oxidase 1 and 2) genotypes, indicating a high rate of karyotype evolution compared to the rate of nucleotide substitution.     

FDA-PI双色荧光分光光度法检测细胞活性变化

本文建立了FDA-PI双色荧光分光光度法来推测细胞活性的变化,通过图谱初步地观察,进一步测定荧光测值,可以定性和定量地进行分析,此方法简便易行,直观,为测量细胞活性的变化提供一种良好的新方法。     

EVOLUTION AND DEVELOPMENT OF BODY SIZE AND CELL SIZE IN DROSOPHILA MELANOGASTER IN RESPONSE TO TEMPERATURE

We examined the evolutionary and developmental responses of body size to temperature in Drosophila melanogaster, using replicated lines of flies that had been allowed to evolve for 5 yr at 25°C or at 16.5°C. Development and evolution at the lower temperature both resulted in higher thorax length and wing area. The evolutionary effect of temperature on wing area was entirely a consequence of an increase in cell area. The developmental response was mainly attributable to an increase in cell area, with a small effect on cell number in males. Given its similarity to the evolutionary response, the increase in body size and cell size resulting from development at low temperature may be a case of adaptive phenotypic plasticity. The pattern of plasticity did not evolve in response to temperature for any of the traits. The selective advantage of the evolutionary and developmental responses to temperature is obscure and remains a major challenge for future work.     

A morphometrics‐based phylogeny of the temperate Gondwanan mite harvestmen (Opiliones,Cyphophthalmi, Pettalidae)

A phylogenetic estimation of the temperate Gondwanan mite harvestman family Pettalidae (Arachnida, Opiliones, Cyphophthalmi) was conducted using 143 morphological variables (59 raw and 84 scaled measurements) from 37 ingroup and 15 outgroup terminals. We used custom algorithms to do pairwise comparisons between characters and identify sets of dependent characters, which were collapsed using principal components analysis. We analysed the resulting data without discretization under the parsimony criterion. Monophyly or paraphyly of most groups suspected from previous molecular and morphological phylogenetic studies were recovered. Trees were optimized for monophyly of 20 different focus clades by varying character phylogenetic independence. This yielded a final tree with monophyly of 15 out of 20 focus clades, including the South African pettalids, which contains the troglomorphic species Speleosiro argasiformis Lawrence, 1931. Two of the remaining five clades were found paraphyletic, with the genera Aoraki, Rakaia, and Siro always being found polyphyeletic.     

PROMISCUITY,SEXUAL SELECTION,AND GENETIC DIVERSITY: A REPLY TO SPURGIN

We recently reported a positive association between female promiscuity and genetic diversity across passerine birds, and launched the hypothesis that female promiscuity acts as a balancing selection, pressure maintaining genetic diversity in populations (Gohli et al. 2013 ). Spurgin ( 2013 ) questions both our analyses and interpretations. While we agree that the hypothesis needs more comprehensive empirical testing, we find his specific points of criticism unjustified. In a more general perspective, we call for a more explicit recognition of female mating preferences as mechanisms of selection in population genetics theory.