Development of a homologous transformation system for Aspergillus niger based on the pyrG gene

Summary The development of a homologous transformation system for Aspergillus niger is described. The system is based on the use of an orotidine-5-phosphate decarboxylase deficient mutant (pyrG) and a vector, pAB4-1, which contains the functional A. niger pyrG gene as a selection marker. Transformation of the A. niger pyrG mutant with pAB4-1 resulted in the appearance of stable Pyr⁺ transformants at a frequency of 40 transformants per g of DNA. In 90% of these transformants integration had occurred at the resident pyrG locus, resulting either in replacement of the mutant allele by the wild-type allele (60%) or in insertion of one or two copies of the vector (40%). The A. niger pyrG mutant could also be transformed with the vector pDJB2 containing the pyr4 gene of Neurospora crassa, at a frequency of 2 transformants per g of DNA. Integration at the resident pyrG locus was not found with this vector. The vector pAB4-1 is also capable of transforming an Aspergillus nidulans pyrG mutant to Pyr⁺. The pyrG transformation system was used for the introduction of a non-selectable gene into A. niger.     

<Emphasis Type="Italic">Agrobacterium tumefaciens</Emphasis>-mediated transformation: an efficient tool for targeted gene disruption in <Emphasis Type="Italic">Talaromyces marneffei</Emphasis>

Talaromyces marneffei causes life-threatening infections in immunocompromised hosts. An efficient tool for genetic manipulation of T. marneffei will allow for increased understanding of this thermally dimorphic fungus. Agrobacterium tumefaciens-mediated transformation (ATMT) was optimized for targeted gene disruption in T. marneffei using the plasmid pDHt/acuD::pyrG. Molecular analyses of transformants were performed by PCR, Southern blot and semi-quantitative RT-PCR. A. tumefaciens strain EHA105 was more efficient at transformation than strain AGL-1 in ATMT via solid co-cultivation. An A. tumefaciens:T. marneffei ratio of 1000:1 in an ATMT liquid co-cultivation led to a relatively high transformation efficiency of 90 transformants per 10⁶ yeast cells. Using ATMT-mediated knockout mutagenesis, we successfully deleted the acuD gene in T. marneffei. PCR and Southern blot analysis confirmed that acuD was disrupted and that the foreign pyrG gene was integrated into T. marneffei. Semi-quantitative RT-PCR analysis further confirmed that pyrG was expressed normally. These results suggest that ATMT can be a potential platform for targeted gene disruption in T. marneffei and that liquid co-cultivation may provide new opportunities to develop clinical treatments.     

Transformation of Aspergillus oryzae using the A. niger pyrG gene

Summary A transformation system for Aspergillus oryzae based on the orotidine-5-phosphate decarboxylase gene (pyrG) was developed. Transformation frequencies of up to 16 transformants per g of DNA were obtained with the vector pAB4-1, which carries the pyrG gene of A. niger. Southern blotting analysis showed that vector DNA sequences were integrated into the chromosomal DNA, in various copy numbers and presumably at different sites. Efficient cotransformation of an unselectable gene was also shown. Under the conditions used no transformants were obtained with the equivalent pyr4 gene of Neurospora crassa.     

New derivatization and separation procedures for reducing oligosaccharides

4-Trifluoroacetamidoaniline was reacted with reducing oligosaccharides in the presence of sodium cyanoborohydride to give aminoalditol derivatives, useful for linkage to proteins or solid matrices. A mixture of reducing oligosaccharides, difficult to separate by HPLC, was treated in the same way. The resulting derivatives were easily separated by HPLC.Abbreviations TFAN 4-trifluoroacetamidoaniline - LcOse₄ lacto-N-tetraose - IV²Fuc-LcOse₄ lacto-N-fucopentaose l - III⁴Fuc-LcOse₄ lacto-N-fucopentaose II - III³Fuc-nLcOse₄ lacto-N-fucopentaose III - IV²Fuc, III⁴Fuc-LcOse₄ lacto-N-difucohexaose I - II⁶Galß1-4GlcNAc-LcOse₄ lacto-N-hexaose - II³NeuAc-Lac 3-sialyllactose - GlcNAcß1-4GlcNAcß1-4GlcNAc chitotriose - GalNac1-3|Fuc1-2|Galß1-4Glc A-tetrasaccharide     

Source of Nitrous Oxide Emissions during the Cow Manure Composting Process as Revealed by Isotopomer Analysis of and amoA Abundance in Betaproteobacterial Ammonia-Oxidizing Bacteria

A molecular analysis of betaproteobacterial ammonia oxidizers and a N₂O isotopomer analysis were conducted to study the sources of N₂O emissions during the cow manure composting process. Much NO₂⁻-N and NO₃⁻-N and the Nitrosomonas europaea-like amoA gene were detected at the surface, especially at the top of the composting pile, suggesting that these ammonia-oxidizing bacteria (AOB) significantly contribute to the nitrification which occurs at the surface layer of compost piles. However, the ¹⁵N site preference within the asymmetric N₂O molecule (SP = δ¹⁵N^α − δ¹⁵N^β, where ¹⁵N^α and ¹⁵N^β represent the ¹⁵N/¹⁴N ratios at the center and end sites of the nitrogen atoms, respectively) indicated that the source of N₂O emissions just after the compost was turned originated mainly from the denitrification process. Based on these results, the reduction of accumulated NO₂⁻-N or NO₃⁻-N after turning was identified as the main source of N₂O emissions. The site preference and bulk δ¹⁵N results also indicate that the rate of N₂O reduction was relatively low, and an increased value for the site preference indicates that the nitrification which occurred mainly in the surface layer of the pile partially contributed to N₂O emissions between the turnings.The very sensitive greenhouse gas nitrous oxide (N₂O) has a 296 times higher impact than CO₂ (39) and is also responsible for ozone depletion (10). Agricultural activities such as the use of nitrate fertilizers, livestock production, and manure management, including composting, are known to be important sources of N₂O emissions (18). To devise a strategy to mitigate N₂O emissions, it is essential to understand its sources in detail. However, the sources of N₂O emissions during the composting process are still largely unclear.In the composting process, a part of NH₄⁺-N is known to be processed through nitrification-denitrification and emitted as N₂ and N₂O. Nitrous oxide is known to be generated through both the nitrification and denitrification processes as intermediate products or by-products. Nitrous oxide emission is a very complex process because denitrifying bacteria are phylogenetically diverse (60), and nitrifiers are also known to utilize the denitrification process even under aerobic conditions (42). It is thus very difficult to estimate the relative contributions of nitrification and denitrification in actual N₂O emissions from the environment. Until now, there has been insufficient knowledge about the relative contributions of these processes to N₂O emissions during the animal manure composting process. Measurement of the actual contributions of N₂O emissions from compost piles in the field is therefore critical to establishing a strategy of mitigating N₂O emissions.Recently, a high-precision analytical technique for determining intramolecular ¹⁵N site preference in asymmetric molecules of N₂O was developed (47). Since N₂O has two N atoms within the molecule (central and outer N), distribution of a stable isotope, ¹⁵N, results in the distribution of three isotopomers, such as ¹⁵N¹⁵NO, ¹⁵N¹⁴NO, and ¹⁴N¹⁵NO. By using this newly developed innovative technique, the latter two types of molecules, which exist abundantly in the environment, can be individually measured. The difference in δ¹⁵N between δ¹⁵N^α and δ¹⁵N^β is the so-called site preference (SP = δ¹⁵N^α − δ¹⁵N^β, where ¹⁵N^α and ¹⁵N^β represent the ¹⁵N/¹⁴N ratios at the center and end sites of the nitrogen atoms, respectively). The site preference enabled us to identify the source and sinks of N₂O in the environment (48, 49, 50, 56). Using this technique, Sutka et al. (44) found that the site preference for N₂O from hydroxylamine oxidation (∼33‰) and nitrite reduction (∼0‰) differs in a pure culture study and noted that this difference can be used to distinguish the relative contributions of nitrification and denitrification sources to N₂O emissions. There have still been only several reported studies which applied this measurement technique to field N₂O samples (48, 53) or referred to the relative contributions of nitrification and denitrification. To our knowledge, the present study is the first to apply this isotopomer analysis technique to the determination of N₂O sources in the composting process. We specifically used this technique to understand the actual contributions of nitrification and denitrification to N₂O emissions during the cow manure composting process.Ammonia oxidation, the conversion of ammonium to nitrite via hydroxylamine, is an initial step of the nitrification-denitrification process and is critical to the nitrogen cycle in the terrestrial environment (4, 24). In the nitrification process, N₂O is generated as a by-product when ammonia oxidizers convert hydroxylamine to nitrite (35). Since NO₂⁻-N and NO₃⁻-N accumulate in the latter stages of the composting process (29, 30), it is obvious that nitrifiers are active in compost piles. Therefore, it is important to clarify the role and significance of ammonia oxidizers in N₂O emissions during the composting process. However, since the pure culture isolation method is so difficult and time-consuming, little is known about these ammonia oxidizers. A molecular approach based on PCR has been recently developed and has to date been used to target the ammonia monooxygenase gene (amoA) or 16S rRNA gene of betaproteobacterial ammonia oxidizers in soil, wetlands, and marine sediments (2, 3, 6, 7, 13, 32, 52). Using these techniques, substantial information about uncultured ammonia-oxidizing bacteria (AOB) that are partially or wholly responsible for nitrification in the environment will become available. Since the microbial community drastically changes through the composting process (19, 29), and a high accumulation of nitrite or nitrate will occur, especially in the latter half of the process (30), we continuously sampled and analyzed the diversity and abundance of AOB throughout the process. Our objectives in this study were to elucidate the sources of N₂O emissions during the cow manure composting process by combining the isotopomer analysis and molecular analysis of betaproteobacterial AOB.     

The structural features of effective antagonists of the luteinizing hormone releasing hormone

Summary The structure-activity data of 6 years on 395 analogs of the luteinizing hormone releasing hormone (LHRH) have been studied to determine effective substituents for the ten positions for maximal antiovulatory activity and minimal histamine release. The numbers of substituents studied in the ten positions are as follows: (41)¹-(12)²-(12)³-(5)⁴-(47)⁵-(52)⁶-(16)⁷-(18)⁸-(4)⁹-(8)¹⁰. In position 1, DNal and DQal were effective with the former being more frequently the better substituent. DpClPhe was uniquely effective in position 2. Positions 3 and 4 are very sensitive to change. D3Pal in position 3 and Ser in position 4 of LHRH were in the best antagonists. PicLys and cPzACAla were the most successful residues in position 5 with cPzACAla being the better substituent. Position 6 was the most flexible and many substituents were effective; particularly DPicLys. Leu⁷ was most often present in the best antagonists. In position 8, Arg was effective for both antiovulatory activity and histamine release; ILys was effective for potency and lesser histamine release. Pro⁹ of LHRH was retained. DAlaNH₂ ¹⁰ was in the best antagonists.Abbreviations AABLys N -(4-acetylaminobenzoyl)lysine - AALys N -anisinoyl-lysine - AAPhe 3-(4-acetylaminophenyl)lysine - Abu 2-aminobutyric acid - ACLys N -(6-aminocaproyl)lysine - ACyh 1-aminocyclohexanecarboxylic acid - ACyp 1-aminocyclopentanecarboxylic acid - Aile alloisoleucine - AnGlu 4-(4-methoxy-phenylcarbamoyl)-2-aminobutyric acid - 2ANic 2-aminonicotinic acid - 6ANic 6-aminonicotinic acid - APic 6-aminopicolinic acid - APh 4-aminobenzoic acid - APhe 4-aminophynylalanine - APz 3-amino-2-pyrazinecarboxylic acid - Aze azetidine-2-carboxylic acid - Bim 5-benzimidazolecarboxylic acid - BzLys N -benzoyllysine - Cit citrulline - Cl₂Phe 3-(3,4-dichlorphenyl)alanine - cPzACAla cis-3-(4-pyrazinylcarbonylaminocyclohexyl)alnine - cPmACAla cis-3-[4-(4-pyrimidylcarbonyl)aminocyclohexyl]alanine - Dbf 3-(2-dibenzofuranyl)alanine - DMGLys N -(N,N-dimethylglycyl)lysine - Dpo N -(4,6-dimethyl-2-pyrimidyl)-ornithine - F₂Ala 3,3-difluoroalanine - hNal 4-(2-naphthyl)-2-aminobutyric acid - HOBLys N -(4-hydroxybenzoyl)lysine - hpClPhe 4-(4-chlorophenyl)-2-amino-butyric acid - Hse homoserine, 2-amino-4-hydroxybutanoic acid - ICapLys N -(6-isopropylaminocaproyl)lysine - ILys N -isopropyllysine - Ind indoline-2-carboxylic acid - INicLys N -isonicotinoyllysine - IOrn N -isopropylornithine - Me₃Arg N^G,N^G,N^G-trimethylarginine - Me₂Lys N ,N -dimethyllysine - MNal 3-[(6-methyl)-2-naphtyl]alanine - MNicLys N -(6-methylpicolinoyl)lysine - MPicLys N -(6-methylpicolinoyl)lysine - MOB 4-methoxybenzoyl - MpClPhe N-methyl-3-(4-chlorphenyl)lysine - MPZGlu glutamic acid,-4-methylpiperazine - Nal 3-(2-naphthyl)alanine - Nap 2-naphthoic acid - NicLys N -nicotinoyllysine - NO₂B 4-nitrobenzoyl - NO₂Phe 3-(4-nitrophenyl)alanine - oClPhe 3-(2-chlorphenyl)alanine - Opt O-phenyl-tyrosine - Pal 3-(3-pyridyl)alanine - 2Pal 3-(2-pyridyl)alanine - 2PALys N -(3-pyridylacetyl)lysine - pCapLys N -(6-picolinoylaminocaproyl)lysine - pClPhe 3-(4-chlorophenyl)alanine - pFPhe 3-(4-fluorophenyl)-alanine - Pic picolinic acid - PicLys N -picolinoyllysine - Pip piperidine-2-car-boxylic acid - PmcLys N -(4-pyrimidylcarbonyl)lysine - Ptf 3-(4-trifluromethyl phenyl)alanine - Pz pyrazinecarboxylic acid - PzAla 3-pyrazinylalanine - PzAPhe 3-(4-pyrazinylcarbonylaminophenyl)alanine - Qal 3-(3-quinolyl)alanine - Qnd-Lys N -quinaldoyllysine - Qui 3-quinolinecarboxylic acid - Qux 2-quinoxalinecarboxylic acid - Tic 1,2,3,4-tetrahydroisoquinoline-3-carboxylic acid - TinGly 2-thienylglycine - tNACAla trans-3-(4-nicotinoylaminocyclohexyl)-alanine - tPACAla trans-3-(4-picolinoylaminocyclohexyl)alanine     

Ornibactins—a new family of siderophores from Pseudomonas

Novel linear hydroxamate/hydroxycarboxylate siderophores from strains of Pseudomonas cepacia were isolated and named ornibactins. The ornibactins represent modified tetrapeptide siderophores, possessing the sequence l-Orn¹(N -OH, N -acyl)-d-threo-Asp(-OH)-l-Ser-l-Orn⁴(N -OH, N -formyl)-1,4-diaminobutane. The N -acyl groups of Orn¹(N -OH, N -acyl) may vary and represent the three acids 3-hydroxybutanoic acid, 3-hydroxyhexanoic acid and 3-hydroxyoctanoic acid, leading to a mixture of three different ornibactins, designated according to their acyl chain length as ornibactin-C4, ornibactin-C6 and ornibactin-C8. Each of the siderophores is accompanied by a small amount of a more hydrophilic component with a 16 a.m.u. higher mass. The structure elucidation was based on results from gas chromatography amino acid analysis, electrospray mass spectrometry, and one- and two-dimensional nuclear magnetic resonance techniques.     

Complexes of Ag with mixed donor phenanthroline-containing macrocycles: spectrofluorimetric, spectrophotometric, conductometric and potentiometric studies

The reactions of Ag⁺ with five mixed donor phenanthroline-containing macrocycles (L¹-L⁵) having N₂S₃-, N₂S₂O-, N₂S₂-, N₃S₂-, and N₄S₂-donor sets, respectively, have been studied in MeCN by spectrofluorimetric, spectrophotometric, conductometric and potentiometric methods. All ligands form 1:1 [Ag(L)]⁺ complexes, and in the case of L⁴ and L⁵, formation of 1:2 [Ag(L)₂]⁺ species is also observed. The corresponding formation constants have been evaluated and their values allow a deeper insight into the role played by complexation process in the potentiometric selectivity for Ag⁺ of membrane electrodes (ISE), and in the selective transport of Ag⁺ through supported liquid membrane (SLM) systems based on these ligands. The X-ray crystal structure of the complex [Ag(L⁴)]BF₄ is also reported.     

Copper(II) complexes of new pentadentate bis(benzimidazolyl)-dithioether ligands: synthesis, structure, spectra and redox properties

Copper(II) complexes of a series of linear pentadentate ligands containing two benzimidazoles, two thioether sulfurs and a amine nitrogen, viz. N,N^′-bis{4^′-(2″-benzimidazolyl)(methyl)-3^′-thiabutyl}amine(L¹), N,N^′-bis{4^′-(2″-benzimidazolyl)(methyl)-3^′-thiabutyl}N-methylamine (L²), 2,6-bis{4^′-(2″-benzimidazolyl)(methyl)-3^′-thiabutyl}pyridine(L³), N,N^′-bis{4^′-(2″-benzimidazolyl)-2^′-thiabutyl}amine (L⁴), N,N^′-bis{4^′-(2″-benzimidazolyl)-2^′-thiabutyl}N-methylamine (L⁵) and 2,6-bis{4^′-(2″-benzimidazolyl)-2^′-thiabutyl}-3pyridine (L⁶) have been isolated and characterized by electronic absorption and EPR spectroscopy and cyclic and differential pulse voltammetry. Of these complexes, [Cu(L¹)](BF₄)₂ (1) and [Cu(L²)](BF₄)₂ (4) have been structurally characterized by X-ray crystallography. The coordination geometries around copper(II) in 1 and 4 are described as trigonal bipyramidal distorted square based pyramidal geometry (TBDSBP). The distorted CuN₃S basal plane in them is comprised of amine nitrogen, one thioether sulphur and two benzimidazole nitrogens and the other thioether sulfur is axially coordinated. The ligand field spectra of all the complexes are consistent with a mostly square-based geometry in solution. The EPR spectra of complexes [Cu(L¹)](BF₄)₂ (1), [Cu(L¹)](NO₃)₂ (2), [Cu(L²)](BF₄)₂ (4) and [Cu(L³)](ClO₄)₂ (6) are consistent with two species indicating the dissociation/disproportionation of the complex species in solution. All the complexes exhibit an intense CT band in the range 305-395 nm and show a quasireversible to irreversible Cu^II/Cu^I redox process with relatively positive E_1/2 values, which are consistent with the presence of two-coordinated thioether groups. The addition of N-methylimidazole (mim) replaces the coordinated thioether ligands in solution, as revealed from the negative shift (222-403 mV) in the Cu^II/Cu^I redox potential. The present study reveals that the effect of incorporating an amine nitrogen donor into CuN₂S₂ complexes is to generate an axial copper(II)-thioether coordination and also to enforce lesser trigonality on the copper(II) coordination geometry.     

Nitrogen fixation in a large shallow lake: rates and initiation conditions

The fixation of molecular nitrogen (N₂fix) by cyanobacteria in situ and in PO₄-P enrichment experiments was investigated in large shallow Lake Võrtsjärv in 1998–2000. In this lake, N₂fix started when TN/TP mass ratio was about 20, which is much higher than Redfield mass ratio 7. The rate of N₂fix varied between 0.81 and 2.61 gN l^–1 d^–1 and maximum rate (2.61 gN l^–1 d^–1) was measured in 15.08.2000. In L. Võrtsjärv a lag period of a couple of weaks occurred between the set-up of favourable conditions for N₂fix as the appearance of N₂-fixing species and depletion of mineral nitrogen, and the real N₂fix itself. However, if the favorable conditions for N₂fix occurred in the lake, N₂fix started after enrichment with PO₄-P in mesocosms even then when no N₂fix was detected in the lake. N₂fix in mesocosms was also more intensive than in lake water. In our experiments PO₄-P concentrations higher than 100 gP l^–1started to inhibit N₂fix.     

The Structure of “N1, N6-Carbonyladenosine”

Abstract

Re-interpretation of the available data led to structural assignment of the title N¹, N⁶carbonyladenosine (1b) as N⁶,N⁶-carbonyldiadenosine (4b).     

Formylmethanofuran: tetrahydromethanopterin formyltransferase and N 5,N 10-methylenetetrahydromethanopterin dehydrogenase from the sulfate-reducing Archaeoglobus fulgidus: similarities with the enzymes from methanogenic Archaea

The sulfate-reducing Archaeoglobus fulgidus contains a number of enzymes previously thought to be unique for methanogenic Archaea. The purification and properties of two of these enzymes, of formylmethanofuran: tetrahydromethanopterin formyltransferase and of N ⁵,N ¹⁰-methylenetetrahydromethanopterin dehydrogenase (coenzyme F₄₂₀ dependent) are described here. A comparison of the N-terminal amino acid sequences and of other molecular properties with those of the respective enzymes from three methanogenic Archaea revealed a high degree of similarity.Abbreviations H₄MPT tetrahydromethanopterin - F₄₂₀ coenzyme - F₄₂₀ formyltransferase, formylmethanofuran: tetrahydromethanopterin formyltransferase - methylene-H₄MPT dehydrogenase N ⁵,N ¹⁰-methylenetetrahydromethanopterin dehydrogenase - methylene-H₄MPT recductase N ⁵,N ¹⁰-methylenetetrahydromethanopterin reductase - cyclohydrolase N ⁵,N ¹⁰-methenyltetrahydromethanopterin cyclohydrolase - APS adenosine 5-phosphosulfate - MOPS 3-(N-morpholino) propane sulfonic acid - TRICINE N-tris(hydroxymethyl)methylglycine - MES morpholinoethanesulfonic acid - 1 U 1 mol/min     

Effect of tree distance on N2O and CH4-fluxes from soils in temperate forest ecosystems

Complete annual cycles of N₂O and CH₄ flux in forest soils at a beech and at a spruce site at the Höglwald Forest were followed in 1997 by use of fully automatic measuring systems. In order to test if on a microsite scale differences in the magnitude of trace gas exchange between e.g. areas in direct vicinity of stems and areas in the interstem region at both sites exist, tree chambers and gradient chambers were installed in addition to the already existing interstem chambers at our sites. N₂O fluxes were in a range of –4.6–473.3 g N₂O-N m^–2 h^–1 at the beech site and in a range of –3.7–167.2 g N₂O-N m^–2 h^–1 at the spruce site, respectively. Highest N₂O emissions were observed during and at the end of a prolonged frost period, thereby further supporting previous findings that frost periods are of crucial importance for controlling annual N₂O losses from temperate forests. Fluxes of CH₄ were in a range of +10.4––194.0 g CH₄ m^–2 h^–1 at the beech site and in a range of –4.4––83.5 g CH₄ m^–2 h^–1 at the spruce site. In general, both N₂O-fluxes as well as CH₄-fluxes were higher at the beech site. On a microsite scale, N₂O and CH₄ fluxes at the beech site were highest within the stem area (annual mean: 49.6±3.3 g N₂O-N m^–2 h^–1; –77.2±3.1 g CH₄ m^–2 h^–1), and significantly lower within interstem areas (18.5±1.4 g N₂O-N m^–2 h^–1; –60.2±1.8 g CH₄ m^–2 h^–1). Significantly higher values of total N, C and pH in the organic layer, as well as increased soil moisture, especially in spring, in the stem areas, are likely to contribute to the higher N₂O fluxes within the stem area of the beech. Also for the spruce site, such differences in trace gas fluxes could be demonstrated to exist (mean annual N₂O emission within (a) stem areas: 9.7±0.9 g N₂O-N m^–2 h^–1 and (b) interstem areas: 6.2±0.6 g N₂O-N m^–2 h^–1; mean annual CH₄ uptake within (a) stem areas: –26.1±0.6 g CH₄ m^–2 h^–1 and (b) interstem areas: –38.4±0.8 g CH₄ m^–2 h^–1), though they were not as pronounced as at the beech site.     

Stepwise reactions of two N-CH2CN or two N-CH2C(NH)OMe groups attached to macrocyclic copper(II) complexes: Preparation of homo- and hetero-di-N-functionalized macrocyclic complexes

The hetero-functionalized macrocyclic complex [CuL²](ClO₄)₂ bearing one N-CH₂C(NH)OMe and one N-CH₂CN groups as well as [CuL³](ClO₄)₂ bearing two N-CH₂C(NH)OMe groups have been prepared selectively by the reaction of [CuL¹](ClO₄)₂ (L² = 2,13-bis(cyanomethyl)-5,16-dimethyl-2,6,13,17-tetraazatricyclo[16.4.0.^1.180^7.12]docosane) with methanol. The N-CH₂C(NH)OCH₃ group in [CuL²](ClO₄)₂ is quite inert against acid hydrolysis. On the other hand, the functional pendant arms in [CuL³](ClO₄)₂ readily undergo acid hydrolysis. Both [CuL⁴](ClO₄)₂ bearing one N-CH₂COOCH₃ and one N-CH₂C(NH)OCH₃ groups and [CuL⁵](ClO₄)₂ bearing two N-CH₂OOCH₃ groups have been prepared by the stepwise hydrolysis of [CuL³](ClO₄)₂. The reactivity of the functional pendant arms in [CuL¹](ClO₄)₂ or [CuL³](ClO₄)₂ is quite different from that in [NiL¹](ClO₄)₂ or [NiL³](ClO₄)₂. The crystal structure of [CuL²](ClO₄)₂ shows that the complex has a slightly distorted square-pyramidal coordination polyhedron with an apical Cu-N (N-CH₂C(NH)OCH₃ group) bond. The N-CH₂C(NH)OCH₃ and/or N-CH₂COOCH₃ groups in [CuL³](ClO₄)₂, [CuL⁴](ClO₄)₂, and [CuL⁵](ClO₄)₂ are involved in coordination, and the complexes have distorted trans-octahedral coordination polyhedron. The axial Cu-N (N-CH₂C(NH)OCH₃ group) distance (2.396(7) Å) of [CuL⁴](ClO₄)₂ is considerably longer than the Cu-N (N-CH₂C(NH)OCH₃ group) distance (2.169(3) Å) of [CuL²](ClO₄)₂.     

Rigid-rod structured palladium complexes

Mononuclear and homobimetallic palladium complexes of structural type [trans-(Me(O)CS-4-C₆H₄)(Ph₃P)₂Pd(N^∩N)]OTf (8a, N^∩NC₄H₄N₂; 8b, N^∩NC₅H₄N-4-CN) and {[trans-(Me(O)CS-4-C₆H₄)(Ph₃P)₂Pd]₂N^∩N}(OTf)₂ (9a, N^∩N = 4,4′-bipyridine (=bipy); 9b, N^∩N = C₆H₄-1,4-(CN)₂; 9c, N^∩N = (C₆H₄-4-CN)₂) are accessible by the reaction of trans-(Ph₃P)₂Pd(C₆H₄-4-SC(O)Me)(OTf) (6) with 1 or 0.5 equivalents of the Lewis-bases N^∩N (7a, N^∩N = C₄H₄N₂; 7b, N^∩N = C₅H₄N-4-CN; 7c, N^∩N = bipy; 7d, N^∩N = C₆H₄-1,4-(CN)₂; 7e, N^∩N = (C₆H₄-4-CN)₂) in high yield. Complex 6 can be prepared in a two-step synthesis procedure. Oxidative addition of I-1-C₆H₄-4-SC(O)Me (2) to Pd(PPh₃)₄ (3) gives trans-(Ph₃P)₂Pd(C₆H₄-4-SC(O)Me)(I) (4), which further reacts with [AgOTf] (5) to afford 6.The formation of 8 and 9 strongly depends on the size of the Lewis-bases N^∩N. It is obvious that the co-ordination of the second N-ligated site of 8a or 8b to a further bulky[(PPh₃)₂Pd(C₆H₄-4-SC(O)Me)]⁺ unit is not possible. In contrast, more extended N^∩N species such as 7c-7e will result in the formation of linear structured homobimetallic 9a-9c.The solid-state structures of 4 and 4 · CH₂Cl₂ are reported. Complex 4 is packed in the orthorhombic space group Pbca. The assembly of dichloromethane into the crystal lattice breaks the symmetry, whereby 4 · CH₂Cl₂ crystallises in the triclinic space group . In both modifications a square-planar palladium(II) ion is present, with the iodo atom and the Me(O)CS-C₆H₄ unit trans-positioned. The different crystal packing has no significant influence onto the geometry around the d⁸-configurated palladium atoms.     

Two N 5, N 10-methylenetetrahydromethanopterin dehydrogenases in the extreme thermophile Methanopyrus kandleri: characterization of the coenzyme F420-dependent enzyme

It was recently reported that the extreme thermophile Methanopyrus kandleri contains only a H₂-forming N ⁵, N ¹⁰-methylenetetrahydromethanopterin dehydrogenase which uses protons as electron acceptor. We describe here the presence in this Archaeon of a second N ⁵,N ¹⁰-methylenetetrahydromethanopterin dehydrogenase which is coenzyme F₄₂₀-dependent. This enzyme was purified and characterized. The enzyme was colourless, had an apparent molecular mass of 300 kDa, an isoelectric point of 3.7±0.2 and was composed of only one type of subunit of apparent molecular mass of 36 kDa. The enzyme activity increased to an optimum with increasing salt concentrations. Optimal salt concentrations were e.g. 2 M (NH₄)₂SO₄, 2 M Na₂HPO₄, 1.5 M K₂HPO₄, and 2 M NaCl. In the absence of salts the enzyme exhibited almost no activity. The salts affected mainly the V _max rather than the K _m of the enzyme. The catalytic mechanism of the dehydrogenase was determined to be of the ternary complex type, in agreement with the finding that the enzyme lacked a chromophoric prosthetic group. In the presence of M (NH₄)₂SO₄ the V _max was 4000 U/mg (k _cat=2400 s^-1) and the K _m for N ⁵,N ¹⁰-methylenetetrahydromethanopterin and for coenzyme F₄₂₀ were 80 M and 20 M, respectively. The enzyme was relatively heat-stable and lost no activity when incubated anaerobically in 50 mM K₂HPO₄ at 90°C for one hour. The N-terminal amino acid sequence was found to be similar to that of the F₄₂₀-dependent N ⁵, N ¹⁰-methylenetetrahydromethanopterin dehydrogenase from Methanobacterium thermoautotrophicum, Methanosarcina barkeri, and Archaeoglobus fulgidus.Abbreviations H₄MPT tetrahydromethanopterin - F₄₂₀ coenzyme F₄₂₀ - CH₂=H₄MPT N ⁵,N ¹⁰-methylenetrahydromethanopterin - CHH₄MPT⁺ N ⁵,N ¹⁰-methenyltetrahydromethanopterin - methylene-H₄MPT dehydrogenase N ⁵,N ¹⁰-methylenetetrahydromethanopterin dehydrogenase - Mops N-morpholinopropane sulfonic acid - Tricine N-[Tris(hydroxymethyl)-methyl]glycine - 1 U = 1 mol/min