Spatial variation in abundance of the junin virus hosts in endemic and nonendemic Argentine haemorrhagic fever zones

Abstract Argentine haemorrhagic fever (AHF) is caused by Junin (JUN) virus, which is hosted by the drylands vesper mouse (Calomys musculinus). In this work we monitored population abundance of C. musculinus and rodent assemblages for 3 years in and outside the AHF endemic zones (northern Buenos Aires, southern Córdoba and Santa Fe Provinces, Argentina). The study area was divided into endemic and nonendemic zones. In the endemic zone epidemic sites were recognized, characterized by recent emergence and maintenance of AHF cases, and also historical sites, characterized by decreased incidence or disappearance of AHF human cases. In the nonendemic zone AHF has never been recognized. Although differences were statistically significant only during some periods, population abundance of C. musculinus was usually lower in the nonendemic sites. The pattern and magnitude of seasonal fluctuations in C. musculinus populations were also distinct in the nonendemic sites as compared to endemic sites. The relative abundance of C. musculinus in rodent assemblage was lower in nonendemic sites than in the endemic sites. The lower population densities and dampened seasonal dynamics may be at least partly responsible for the absence of AHF cases in the nonendemic zone. It is suggested that the balance between intra and interspecific interactions might be the cause of the pattern of incidence and prevalence of pathogens in the host species.     

Seasonal Changes in Microhabitat Use and Niche Overlap between Akodon azarae and Calomys laucha (Rodentia,Muridae) in Agroecosystems of Central Argentina

We examined seasonal changes in microhabitat use by the murid rodents Akodon azarae and Calomys laucha in agroecosystems of the former pampa region of Argentina. In summer, trap data showed that both species had low densities and were almost equally distributed between the mature cropfields and their surrounding weedy borders. Analysis of vegetation at the trap sites revealed no selection for microhabitats at the borders, whereas in the cropfields both species shared preferences for covered microhabitats. In contrast, winter data revealed a sharp habitat segregation, being Calomys numerically dominant in post-harvest cropfields and Akodon more abundant in borders. Moreover, there were clear differences in microhabitat selection at the borders, A. azarae occupying the more covered microhabitats and C. laucha the less covered. Breadth and overlap of niches were calculated using principal component analysis, in order to recognize interspecific competition and its influence on community niche space. Available evidence indicates that the structure of this rodent community is strongly influenced by seasonal changes in habitat stucture and rodent abundance. The socially dominant A. azarae retains the best part of the available niche space, a fact becoming more evident under the harsh winter conditions.     

Density-dependent habitat selection between maize cropfields and their borders in two rodent species (Akodon azarae and Calomys laucha) of Pampean agroecosystems

We studied habitat preferences and intra and interspecific density-dependent effects on habitat selection by Akodon azarae and Calomys laucha between maize fields and their adjacent borders, during different developmental stages of the crop. Akodon azarae detected quantitative differences between habitats, using preferentially borders throughout the year, while C. laucha perceived borders and cropfields as quantitatively similar during spring and summer and it detected borders as quantitatively better at the high density period (autumn and winter). These results support the prediction of differential habitat preferences as a model of community organisation at the low density period, while they are consistent with shared habitat preferences during autumn and winter when both species apparently coexist in the better habitat (border). Akodon azarae showed intraspecific density-dependent habitat selection throughout the year, except in spring, while habitat selection by C. laucha was density-dependent in spring, autumn and winter. The effect of interspecific density on habitat selection was detected in both habitats and changed seasonally. The effect of A. azarae over C. laucha by resources exploitation was detected in borders, while competitive effects of C. laucha over A. azarae was observed within cropfields. Both species were more affected by exploitation competition than interference, which was more common in borders than in maize fields. We conclude that seasonally have a profound effect in habitat selection of these species because it changes the intensity of intra and interspecific competition and affects different habitat preferences and basic suitability of habitats. This revised version was published online in November 2006 with corrections to the Cover Date.     

Long-term variations in rodent abundance in a rural landscape of the Pampas, Argentina

The goal of this study was to analyze the variations in abundance of rodent communities over the last 24 years in a rural area, and their relation to possible changes in climatic variables and land use. The principal change in the area observed along the study period was an increase in the area covered by soybean. The habitats studied were crop fields and borders. The total abundance of rodents did not show a significant trend of variation over time in crop fields while in borders the abundance in autumn–winter (A–W) showed a significant trend to decrease over time. The different rodent species showed a differential response over time. While Calomys laucha and C. musculinus showed a decrease between the period before and after the soybean expansion, Akodon azarae did not change its abundance over time. The mean minimum temperature increased over time while the number of days with frost decreased. Total rodent abundance in A–W was positively associated with the cumulated precipitation of the previous spring–summer period and negatively with the cumulated precipitation of the same period. We conclude that rodent abundance variations in crop fields and borders of the study area are influenced by precipitation, but the observed trends of variation over time are better explained by changes in agricultural practices than by meteorological variables.     

The use of fluctuating asymmetry as a measure of farming practice effects in rodents: A species-specific response

The effects of agricultural intensification on vertebrate populations could vary depending on whether species are habitat specialists or habitat generalists. Organic farming practices are generally considered to be less intensive and more environmental friendly than conventional farming practices and, as a result, these two managements may impact on habitat specialists and habitat generalists in different ways. The effect of environmental and/or genetic stress on populations can be assessed using fluctuating asymmetry (FA) and body condition of animals. We predicted that populations of a specialist species, the Pampean grassland mouse (Akodon azarae) would have higher levels of FA and poorer body condition on conventional farms compared to populations of A. azarae on organic farms. In contrast, we predicted that populations of generalist species, the corn mouse (Calomys musculinus) and the small vesper mouse (Calomys laucha) would not show differences in FA or body condition between conventional and organic farms. We examined the expression of FA in the hind foot and used the scaled mass index as a surrogate for body condition. As predicted, we found higher FA in the habitat specialist (A. azarae) on conventional farms compared to organic farms, and found no differences in FA among the two generalist species (C. musculinus and C. laucha). However, we found no differences in body condition for the three studied species between the two managements. Our results suggest that the effect of farming practices on small mammals varies between habitat specialists and habitat generalists. The results of this study provide important insights for the study of asymmetries, both from biological and methodological perspectives. Our results support the idea that the level of FA may be used as an index to assess the effects of farming practices on vertebrate populations.     

Gene Flow Among Calomys Musculinus (Rodentia, Muridae) Populations in Argentina

Calomys musculinus is a Sigmodontinae rodent inhabiting periodically disturbed habitats in the central eastern plains of Argentina. It is the natural reservoir host of Junin virus, the etiological agent of Argentine Hemorrhagic Fever (AHF). In order to analyze the levels of gene flow among populations of this species, allozymic variability at 26 loci was studied in 291 individuals from the endemic zone of AHF and localities outside it. All populations showed high levels of polymorphism (H _e between 0.107 and 0.144; P_95% between 38 and 54%). Individual loci f values were in most cases negative, although not significantly different from zero. Mean genetic differentiation among populations was low, but statistically significant (=0.020; P<0.01). There was no correlation between genetic and geographic distances between pairs of populations, and scatter of the pairwise points suggests that, at the regional scale, genetic drift is more influential than gene flow. This result can be interpreted as indicative of a relatively recent expansion of C. musculinus habitat and restricted on-going gene flow, which would be compatible with a relatively slow expansion rate of AHF.     

Fire affects the occurrence of small mammals at distinct spatial scales in a neotropical savanna

Fire is a major disturbance event that affects biomes worldwide, altering vegetation structure and flora and fauna assemblages. Here, we investigated the effects of an extensive wildfire (~?6240 ha) on small mammal assemblages in savanna woodland (cerradão) at two spatial scales (meso- and macrohabitat) in a neotropical savanna (Brazilian Cerrado). At each spatial scale, we assessed relationships between habitat structure and small mammal species composition and abundance before and after the fire in four natural patches (one burned, three unburned) using partial redundancy analysis. From July 2009 to October 2013, we captured 1319 individuals belonging to 14 species. Our results showed that the fire had consequences for small mammal assemblage at both scales. After the fire, the burned patch differed from the other patches in vegetation attributes and species composition. At a fine scale, fire increased the herbaceous layer and decreased the litter layer and understory obstruction. On a larger scale, the main consequences of fire on vegetation structure were increased variation in litter depth, tree diameter, and distance to the nearest tree. We observed a relationship between mesohabitat structure and the abundance of species with different habitat requirements during the post-fire succession. Fire favored the invasion of generalist species from open Cerrado habitats (rodents Calomys tener, Calomys expulsus, Cerradomys scotti, and Necromys lasiurus) at the expense of more specialized forest species. Our results reinforce the relevance of incorporating multi-scale habitat heterogeneity in future studies assessing the effects of fire on wildlife.     

Accurate identification of three cryptic species of rodents of the genus Calomys using RAPD-PCR and mitDNA RFLP markers

Calomys musculinus, Calomys laucha and Calomys venustus are cryptic species with overlapping distribution ranges. C. musculinus is the natural reservoir of Junin virus (Arenaviridae), the etiological agent of Argentine Hemorrhagic Fever. In epidemiological studies it is very important to unequivocally identify the species of individuals collected in the field in order to test virus infection. The purpose of this work was to describe molecular markers allowing a prompt and clear characterization of individuals of the three species. We studied the D-loop region of mitochondrial DNA by restriction fragment length polymorphism (RFLP). This region was amplified by PCR and the product was digested with nine restriction endonucleases (RE). Eight recognize 4 bp restriction sites (Taqα I, Tsp509 I, Aci I, Rsa I, Alu I, Nla III, Hae III and Mse I) and one recognized a 6 bp sequence (Ase I). Two of them (Aci I and Hae III) did not distinguish any of the three species. Alu I did not discriminate between C. musculinus and C. laucha, but clearly distinguished both from C. venustus. Taq I did not distinguish C. laucha from C. venustus, but differentiated both species from C. musculinus. Mse I distinguished the three species, but some of the polymorphisms of C. musculinus are very similar to C. laucha's restriction pattern. The enzyme Nla III distinguished the three species, but it is highly polymorphic within species. The enzymes Tsp509 I, Rsa I and Ase I clearly discriminated the three species, and patterns obtained with the three of them are recommended for reliable identification of individuals collected in the field. The same DNA samples were used to obtain Random Amplified Polymorphic DNAs (RAPDs) patterns. Several bands produced with primers A02, A06, A08, A09, B09 and OPA02 are species specific and could also be used for identification.     

Assessment of habitat quality for four small mammal species of the Monte Desert, Argentina

In the temperate desert of Argentina, the combined action of climatic and anthropogenic factors has contributed to the formation of a highly heterogeneous landscape. In the central region of the Monte desert, four small mammal species (Eligmodontia typus, Calomys musculinus, Akodon molinae and Graomys griseoflavus) coexist and show different habitat uses in response to spatial variability. Three main habitat types are present in the region: mesquite forest, the creosotebush community and sand dunes. These habitat types are present also in the surrounding grazing area.The objective of this study was to determine habitat quality for these species in a protected area (Reserve MaB Ñacuñán) and in the adjacent grazed area. For each species we estimated demographic parameters that are highly correlated to fitness in each habitat, and for both treatments (protected and grazed).We found that the protected area offered a higher quality habitat than the grazed area for all species, but principally A. molinae and G. griseoflavus. At a local scale, we found that A. molinae and C. musculinus clearly showed higher fitness in the more complex habitats as the creosotebush community and the mesquite forest. In contrast, for E. typus, open and simplest patches, such as sand dunes, were optimal for its survival and reproduction.     

Protein polymorphism and genetic distance in South American cricetid rodents of the genus Calomys

Allozymic variation in population samples of Calomys laucha, C. musculinus and C. venustus collected simultaneously from the province of Córdoba, Argentina, was analyzed by gel electrophoresis. These three species showed high levels of polymorphism: for C. laucha, the P value was 72.7% and the H value was 0.147 (19 loci); for C. musculinus, P=61.9% and H=0.149 (20 loci); for C. venustus, P=66.7% and H=0.146 (18 loci). These species are non-fossorial generalists, have a high reproductive rate and live in disturbed habitats. The similarity indices (S) range between 0.613 and 0.681. On the basis of genetic distance, D (between 0.354 and 0.476), divergence time was estimated to be from 6.3 to 8.5 million years (late Miocene). Even admitting some imprecision for this estimate, the remarkable differences at the structural gene level shown by the species analyzed, suggest they had an early origin.     

Landscape partitioning by nocturnal rodent assemblages in the Llanos de Ojuelos,in Mexico’s Central High Plateau

Aim The Llanos de Ojuelos in Mexico’s Central High Plateau supports unique Opuntia scrublands and the southernmost Chihuahuan grasslands. Although human activities have modified strongly its landscape and impacted its biodiversity at an unknown scale, such impacts are poorly known. We aimed at understanding how nocturnal rodent species distributed across the landscape and formed assemblages and on the role and integration of the different habitats at the landscape level. Location The study was carried out at 43 sites in a study area of approximately 3350 km² in the Llanos de Ojuelos. Methods During the Spring of 2008, we surveyed nocturnal rodents, through live‐trapping. We redefined habitat classes based on log‐linear multinomial regressions of rodent captures. Species rarefaction curves and true alpha, beta and gamma diversities were calculated for the different habitat classes. A map of the different habitats was constructed based on Landsat imagery. Results We captured 458 individuals of 20 rodent species. Multinomial regressions caused the merger of 11 a priori defined habitat classes into 7. Leguminous scrub and mixed nopaleras, both secondary habitats, had the highest alpha and gamma diversity values. Closed arboreal nopaleras and grasslands had the highest within‐habitat variability (¹D_β) and the lowest area coverage. Within‐habitat ¹D_β was larger than landscape ¹D_β, because of the great overlap in rodent assemblage composition between the habitats. Main conclusions There are no ‘typical’ rodent assemblages per habitat class, but they are organized loosely and have fuzzy borders. Rodent community organization was highly species‐centred. At the landscape level, secondary habitats have a profound effect on rodent diversity and should be included in management schemes for biological conservation. The most endangered habitats seem to be the closed arboreal nopaleras and grasslands. Any conservation efforts must consider their conservation and an increase in the size of remaining patches.     

贺兰山西坡啮齿动物生境选择及种间关系

为明确对贺兰山西坡啮齿动物生境选择起关键作用的主要环境因子,探讨各鼠种之间的相互作用如何影响鼠种的生境选择,选取地理因子（海拔、坡度、坡向）、植被因子（植被盖度、植被高度、灌木/乔木高度）和其他因子（距水源距离、距道路距离、距灌木/乔木距离）等9种生境因子,利用资源选择函数模型和logistic回归模型对啮齿动物生境选择和种间关系进行分析。结果表明,在贺兰山西坡,捕获数量最多的6种啮齿动物对的生境选择存在差异,大林姬鼠（Apodemus peninsulae）偏好高海拔、多灌木（乔木）的生境;子午沙鼠（Meriones meridianus）偏好海拔较低的半荒漠稀疏生境,对道路和人为干扰不回避;灰仓鼠（Cricetulus migratorius）偏好距水源较远、多灌木（乔木）、距道路较近的生境;阿拉善黄鼠（Spermophilus alaschanicus）偏好低海拔、植被丰富的生境;短尾仓鼠（Cricetulus eversmanni）偏好高海拔、距道路较近的生境;社鼠（Niviventer niviventer）偏好海拔较高、坡度较大、距水源较远的生境。鼠种间的相互关系主要呈现回避或随机关系。研究结果有助于了解啮齿动物分布的变化及种群动态规律,可为贺兰山生物资源保护,区域性鼠害的预测、预报和综合治理提供基础资料和科学依据。     

Population growth and habitat distribution in cyclic small rodents: to expand or to change?

Habitat selection determined by intraspecific interactions (social behaviour), being either free or despotic, should result in the largest densities in the most favourable habitat at least in late increase and decline phases of cyclic populations. Habitat distribution determined by interspecific effects such as herbivore-plant or predator-prey interactions may result in higher densities in inferior habitats at late peaks and/or declines due to overgrazing of preferred habitats, or invasion of such habitats by specialist predators. An examination of the distributions of the rodent species Clethrionomys glareolus and Microtus agrestis during a population cycle on forest clearcuts at Grimsö, south-central Sweden, demonstrated clear changes towards less preferred habitats during the decline phase, particularly in M. agrestis. Intraspecific competition could be excluded as a cause since the numbers of both species declined simultaneously. There was no sign of overgrazing, while weasels, Mustela nivalis, invaded the preferred M. agrestis habitat during peak–decline. Predation thus appears more important for the local occurrence at early decline, rather than territoriality or other social behaviour. It is concluded that distributions in various habitats do not always reveal any primary habitat selection but, rather, habitat-dependent survival.     

Use of agroecosystem matrix habitats by mammalian carnivores (Carnivora): a global‐scale analysis

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Space Use Variation in Co-Occurring Sister Species: Response to Environmental Variation or Competition?

Coexistence often involves niche differentiation either as the result of environmental divergence, or in response to competition. Disentangling the causes of such divergence requires that environmental variation across space is taken into account, which is rarely done in empirical studies. We address the role of environmental variation versus competition in coexistence between two rodent species: Rhabdomys bechuanae (bechuanae) and Rhabdomys dilectus dilectus (dilectus) comparing their habitat preference and home range (HR) size in areas with similar climates, where their distributions abut (allopatry) or overlap (sympatry). Using Outlying Mean Index analyses, we test whether habitat characteristics of the species deviate significantly from a random sample of available habitats. In allopatry, results suggest habitat selection: dilectus preferring grasslands with little bare soil while bechuanae occurring in open shrublands. In sympatry, shrubland type habitats dominate and differences are less marked, yet dilectus selects habitats with more cover than bechuanae. Interestingly, bechuanae shows larger HRs than dilectus, and both species display larger HRs in sympatry. Further, HR overlaps between species are lower than expected. We discuss our results in light of data on the phylogeography of the genus and propose that evolution in allopatry resulted in adaptation leading to different habitat preferences, even at their distribution margins, a divergence expected to facilitate coexistence. However, since sympatry occurs in sites where environmental characteristics do not allow complete species separation, competition may explain reduced inter-species overlap and character displacement in HR size. This study reveals that both environmental variation and competition may shape species coexistence.     

The influence of habitat on the spatial variation in fish assemblage composition in an unimpacted tropical River of Ganga basin, India

Effects of local habitat variables on the structure of fish assemblage were evaluated from 50 sampling sites in a tropical River of Central India of the Ganges basin with limited anthropogenic disturbance covering premonsoon, monsoon and postmonsoon periods. Data were analyzed for 5,186 fish individuals of 24 freshwater fish species of conservation and fishery management interest. Out of the total fish species, seven belong to the ??endangered?? and 8 belong to the vulnerable category. A Cyprinid, Puntius sarana, was the most widely distributed species (frequency of occurrence 76%) out of the total species in this study. We used canonical correspondence analyses to determine the influence of environmental conditions on species occurrences and assemblage characteristics. Regarding the microhabitat, hydromorphological parameters (depth and current velocity) followed by temperature, turbidity and total dissolve solid were of significant for the structure of the fish community. Conductivity was another important factor that explained the major proportion of the variability affecting fish in their habitat choice. The other local habitat variables like overhanging vegetation and land use were of secondary but significantly important for the assemblage of the fishes. Our results suggests the importance of local environment influences on the fishes of conservation importance and their assemblage characteristics in an unimpacted river and provide a framework and reference conditions to support restoration efforts of relatively altered fish habitats in tropical rivers of India.     

Effect of environmental factors on the abundance variations of two native rodents in agricultural systems of Buenos Aires,Argentina

Our aim was to assess the effect of environmental factors on short temporal abundance variations of the two most abundant native rodents of agricultural agroecosystems, Akodon azarae and Calomys laucha. We conducted a 3‐year longitudinal sampling of rodents, and recorded meteorological data such as temperature and precipitation, predation rate by Leopardus geoffroyi, Tyto furcata and Athene cunicularia, vegetation cover and height, characteristics of cropfields and their borders. The effect of these factors on rodent abundance was evaluated through generalized linear mixed models. Abundance variations of both rodent species were explained by characteristics of both cropfields and their borders. At the studied temporal scale, meteorological variables did not have a direct effect on abundance variations, but probably influenced through vegetation characteristics and were expressed in seasonal variations. For A. azarae there was also an effect of predation by L. geoffroyi (positive) and T. furcata (negative), while predation by A. cunicularia did not contribute to explain abundance variations of any species.     

The Survival of Transplants of Rare Ligularia sibirica is Enhanced by Neighbouring Plants

Reintroduction programs are often initiated to restore the viability of endangered plant populations, whose decline is usually caused by loss of suitable habitats. Ligularia sibirica is a species associated with wetlands. It is endangered in Europe and has declined considerably in Estonia since the cessation of traditional management and, in addition, drainage leading to the overgrowth of habitats. The purpose of this work was to estimate the extent of the impact of competition from neighbouring plants and habitat change caused by overgrowing on the survival of transplants of L. sibirica and thereby assess the effectiveness of reinforcement. Laboratory-grown transplants were planted back into their original populations in plots arranged in a two × two (vegetation intact or removed × open or overgrown habitat) factorial experimental design, and their survival was followed for three years. The survival differed notably among populations, but the percentage of surviving plants per plot was on average higher in plots with intact vegetation and in open habitats. The latter indicates that overgrowing indeed decreases habitat quality for this species, despite the fact that plants of L. sibirica can often be found in forested habitats. The lower survival in plots where vegetation had been removed can largely be explained by increased damage caused by animals. In intact plots, by contrast, neighbouring plants provide shelter and protection. Our results stress the importance of restoration and preservation of habitat quality for the protection of this rare species, for which reinforcement may be effective.     

Temporal and spatial patterns in littoral-zone fish assemblages of a reservoir (Lake Texoma,Oklahoma-Texas,U.S.A.)

Synopsis We sampled the littoral-zone fish fauna of Lake Texoma reservoir by electrofishing from January through December 1986 to examine species abundance, species associations and assemblage structure. Although total fish abundance differed significantly across seasons, only one common species (Dorosoma cepedianum) exhibited significant seasonal movement into or out of the littoral zone. Overall littoral-zone assemblage structure (based on rank order of species abundance) was concordant across seasons and habitat types, (vegetation, wood, open). However, within individual seasons and habitat types, assemblage structure was likely influenced by temporal and spatial differences in habitat availability and physicochemical conditions. Associations characteristic of species in natural aquatic environments were not well developed among species in this partly artificial, evolutionarily short-lived reservoir assemblage. Conditions related to water-level fluctuation appeared to deter the formation of persistent species associations and assemblage structure, especially in vegetation and open littoral zone habitats of this multi-purpose reservoir.Senior author     

Isolation from forest habitats reduces chances of the presence of <Emphasis Type="Italic">Osmoderma eremita</Emphasis> sensu lato (Coleoptera,Scarabaeidae) in rural avenues

Decline and fragmentation of natural habitats, such as old-growth forests, reduces their availability in the landscape. The solution to this problem for many forest-dwelling species, may be colonization of alternative habitats, such as parks, orchards or rural avenues, located in the highly fragmented agricultural landscape. Our main objective was to determine the effect of both habitat quality parameters and isolation from potential forest habitats, as primary habitats, on the occurrence of the hermit beetle (Osmoderma) in rural avenues in south-western Poland. The study was based on the results of an inventory of the species in 201 rural avenues within an area of approx. 30,000 km². Occurrence of the hermit beetle in such alternative habitats was affected by both habitat quality parameters and connectivity with suitable forest habitats. The species occurrence in an avenue was significantly positively affected by mean tree diameter and diversity of tree species, but probability of occurrence decreased as isolation of avenue from the deciduous forest increased. Moreover, in the study area the hermit beetle seemed to avoid alleys with a large proportion of Acer platanoides, Fraxinus excelsior and Populus spp. Spatially isolated roadside avenues have limited value in the preservation of the hermit beetle in the long term conservation management of the species. Conservation plans in such habitats should therefore take into account surrounding suitable habitats.