Fish scale shape follows predictable patterns of variation based on water column position,body size,and phylogeny

Evolutionary Ecology - The influence of environment and phylogeny on morphological characteristics of organisms is well documented. However, little is known about how these factors influence scale...     

Desiccation of intertidal limpets: Effects of shell size,fit to substratum,and shape

For undisturbed, field populations of the northeast Pacific, intertidal limpet Collisella pelta (Rathke), water loss was found to be proportional to apertural circumference rather than mantle cavity surface area. This contrasts with previous laboratory measurements for other limpet species and emphasizes the importance of the fit of shell to substratum for non-homing limpets. This close fit maintained a meniscus of water between the edge of the shell and the substratum, thereby reducing evaporative surface area and increasing the advantage of large size for reducing the rate of water loss. Shell-raising behavior eliminated the meniscus, increasing the rate of desiccation, and water loss appeared to become proportional to mantle cavity surface area. Indirect evidence suggests that C. pelta may utilize shell-raising behavior for evaporative cooling under thermally stressful conditions in the field.Both shell size and shape affect the ratio of water stores (proportional to internal shell volume) to evaporative surface area (proportional to apertural circumference) and per cent water loss is, potentially, a function of this ratio. Shape, however, (when defined as volume/circumference) exhibits an average allometric increase with increasing size (volume) for C. pelta, as well as for three other sympatric limpet species: C. Paradigitalis (Fritchman), C. Digitalis (Rathke), and Notoacmea scutum (Rathke). An independent measure of shape is, therefore, required to separate shape effects on desiccation from size effects; this measure was obtained by rearranging the allometry equation. In contrast to significant size effects, no measurable effect of shape on desiccation was detected. Variation in limpet shell shape may be partially or wholly maintained by factors other than an adaptational response to desiccation.     

Uncertainty in the age of fossils and the stratigraphic fit to phylogenies

The ages of first appearance of fossil taxa in the stratigraphic record are inherently associated to an interval of error or uncertainty, rather than being precise point estimates. Contrasting this temporal information with topologies of phylogenetic relationships is relevant to many aspects of evolutionary studies. Several indices have been proposed to compare the ages of first appearance of fossil taxa and phylogenies. For computing most of these indices, the ages of first appearance of fossil taxa are currently used as point estimates, ignoring their associated errors or uncertainties. The effect of age uncertainty on measures of stratigraphic fit to phylogenies is explored here for two indices based on the extension of ghost lineages (MSM* and GER). A solution based on randomization of the ages of terminal taxa is implemented, resulting in a range of possible values for measures of stratigraphic fit to phylogenies, rather than in a precise but arbitrary stratigraphic fit value. Sample cases show that ignoring the age uncertainty of fossil taxa can produce misleading results when comparing the stratigraphic fit of competing phylogenetic hypotheses. Empirical test cases of alternative phylogenies of two dinosaur groups are analyzed through the randomization procedure proposed here.     

Evaluation of genes to reduce seed size in shape Arabidopsis and tobacco and their application to shape Citrus

Seedlessness is a highly desirable characteristic in fresh fruit. Marketability of a fruit as seedless does not require complete absence of seeds as long as the seed structures are imperceptible during consumption. Chimaeric genes comprised of soybean -conglycinin seed storage protein gene promoters linked to the bacterial RNase gene, Barnase, were tested for their efficacy to cause seed death and decrease seed size in tobacco and Arabidopsis. These species were used because they undergo two distinct seed developmental pathways and produce albuminous and exalbuminous seeds, respectively. In both species, the death of embryo and endosperm tissues occurred, resulting in a dominant seed lethal phenotype with segregation distortion. Reduction in seed size was only observed in Arabidopsis seeds and the phenotype resembled that of stenospermocarpic seeds in grape. Some transformants of both species were male-sterile and this correlated with the expression of the gene in anthers indicating that expression of the gene is not strictly seed-specific. The promoters also direct expression of a linked GUS gene to Citrus embryos of various developmental stages, and Citrus forms exalbuminous seeds, therefore, the Barnase constructions may be useful in eliciting a reduction in seed size of around 75% of the seeds found in the fruit. This may be sufficient to warrant marketing as less seedy if trials in the cultivar of interest indicate that the smaller seeds are less detectable to the consumer. Abbreviations: GUS, -glucuronidase; PCR, polymerase chain reaction; DMSO, dimethyl sulfoxide; DTA, diphtheria toxin-A chain; CFDA, 5(6)-carboxy-fluorescein di-acetate; CG, -conglycinin; DAP, days after pollination; FAA, formaldehyde-acetic acid alcohol fixative.     

Relationships between tree size, crown shape, gender segregation and sex allocation in Pinus halepensis, a Mediterranean pine tree

Background and Aims

Sex allocation has been studied mainly in small herbaceous plants but much less in monoecious wind-pollinated trees. The aim of this study was to explore changes in gender segregation and sex allocation by Pinus halepensis, a Mediterranean lowland pine tree, within tree crowns and between trees differing in their size or crown shape.

Methods

The production of new male and female cones and sex allocation of biomass, nitrogen and phosphorus were studied. The relationship between branch location, its reproductive status and proxies of branch vigour was also studied.

Key Results

Small trees produced only female cones, but, as trees grew, they produced both male and female cones. Female cones were produced mainly in the upper part of the crown, and male cones in its middle and lower parts. Lateral branch density was correlated with the number of male but not female cones; lateral branches were more dense in large than in small trees and even denser in hemispherical trees. Apical branches grew faster, were thicker and their phosphorus concentration was higher than in lateral shoots. Nitrogen concentration was higher in cone-bearing apical branches than in apical vegetative branches and in lateral branches with or without cones. Allocation to male relative to female function increased with tree size as predicted by sex allocation theory.

Conclusions

The adaptive values of sex allocation and gender segregation patterns in P. halepensis, in relation to its unique life history, are demonstrated and discussed. Small trees produce only female cones that have a higher probability of being pollinated than the probability of male cones pollinating; the female-first strategy enhances population spread. Hemispherical old trees are loaded with serotinous cones that supply enough seeds for post-fire germination; thus, allocation to males is more beneficial than to females.     

Effect of shape, size, and valency of multivalent mannosides on their binding properties to phytohemagglutinins

Clusters of di-, tri-, and tetra-antennary -D-mannopyranosides were synthesized in good yields based on the coupling of amine-bearing mono- or trisaccharide {Man (16)[Man (13)]Man} haptens to poly-isocyanate or -isothiocyanate tethering cores. The relative binding properties of the resulting multivalent ligands were determined by turbidimetric and solid phase enzyme-linked lectin assays (ELLA) using plant lectins (phytohemagglutinins) Concanavalin A (Con A) and Pisum sativum (pea lectin) having four and two carbohydrate binding sites, respectively. Rapid and efficient cross-linking between tetravalent Con A and mannopyranosylated clusters were measured by a microtiter plate version of turbidimetric analyses. In inhibition of binding of the lectins to yeast mannan, the best tetravalent monosaccharide (30) and trisaccharide (31) inhibitors were shown to be 140 and 1155 times more potent inhibitors than monomeric methyl -D-mannopyranoside against pea lectin and Con A, respectively. Compounds 30 and 31 were thus 35 and 289 fold more potent than the reference monosaccharide based on their hapten contents. As a general observation, the ligands bearing the Man (16)[Man (13)]Man trimannoside structures were found to be more potent inhibitors for Con A than the ligands having single mannoside residues, whereas pea lectin could not discriminate between the two types of ligands.     

Species distribution,ecology, abundance,body size and phylogeny originate interrelated rarity patterns at regional scale

The most pervasive macroecological patterns concern (1) the frequency distribution of range size, (2) the relationship between range size and species abundance and (3) the effect of body size on range size. We investigated these patterns at a regional scale using the tenebrionid beetles of Latium (Central Italy). For this, we calculated geographical range size (no. of 10‐km square cells), ecological tolerance (no. of phytoclimatic units) and abundance (no. of sampled individuals) using a large database containing 3561 georeferenced records for 84 native species. For each species, we also calculated body mass and its ‘phylogenetic diversity’ on the basis of cladistic relationships. Frequency distribution of range size followed a log‐normal distribution as found in many other animal groups. However, a log‐normal distribution accommodated well the frequency distribution of ecological tolerance, a so far unexplored issue. Range size was correlated with abundance and ecological tolerance, thus supporting the hypothesis that a positive correlation between distribution and abundance is a reflection of interspecific differences in ecological specialization. Larger species tended to have larger ranges and broader ecological tolerance. However, contrary to what known in most vertebrates, not only small‐sized, but also many medium‐to‐large‐sized species exhibited great variability in their range size, probably because tenebrionids are not so strictly influenced by body size constraints (e.g. home ranges) as vertebrates. Moreover, in contrast to other animals, tenebrionid body size does not influence species abundances, probably because these detritivorous animals are not strongly regulated by competition. Finally, contrary to the assumption that rare species should be mainly found among lineages that split from basal nodes, rarity of a tenebrionid species was not influenced by the phylogenetic position of its tribe. However, lineages that split from more basal nodes had lower variability in terms of species geographical distribution, ecological tolerance and abundance, which suggests that lineages that split from more basal nodes are not only morphologically conservative but also tend to have an ecological ‘inertia’.     

Influence of tree shape and evolutionary time‐scale on phylogenetic diversity metrics

During the last decades, describing, analysing and understanding the phylogenetic structure of species assemblages has been a central theme in both community ecology and macro‐ecology. Among the wide variety of phylogenetic structure metrics, three have been predominant in the literature: Faith's phylogenetic diversity (PD_Faith), which represents the sum of the branch lengths of the phylogenetic tree linking all species of a particular assemblage, the mean pairwise distance between all species in an assemblage (MPD) and the pairwise distance between the closest relatives in an assemblage (MNTD). Comparisons between studies using one or several of these metrics are difficult because there has been no comprehensive evaluation of the phylogenetic properties each metric captures. In particular it is unknown how PD_Faith relates to MDP and MNTD. Consequently, it is possible that apparently opposing patterns in different studies might simply reflect differences in metric properties. Here, we aim to fill this gap by comparing these metrics using simulations and empirical data. We first used simulation experiments to test the influence of community structure and size on the mismatch between metrics whilst varying the shape and size of the phylogenetic tree of the species pool. Second we investigated the mismatch between metrics for two empirical datasets (gut microbes and global carnivoran assemblages). We show that MNTD and PD_Faith provide similar information on phylogenetic structure, and respond similarly to variation in species richness and assemblage structure. However, MPD demonstrate a very different behaviour, and is highly sensitive to deep branching structure. We suggest that by combining complementary metrics that are sensitive to processes operating at different phylogenetic depths (i.e. MPD and MNTD or PD_Faith) we can obtain a better understanding of assemblage structure.     

Laurina mutation affected Coffea arabica tree size and shape mainly through internode dwarfism

The two varieties—Bourbon (B) and its natural mutant Bourbon pointu (BP)—of Arabica coffee (Coffea arabica L.) differ by an epigenetic, monolocus, and recessive laurina mutation that results in pleiotropic effects, such as tree dwarfism and tree-shape modification. The objective of the study was to search for the origin of the differences in size and shape of the tree both at the macroscopic (length and number of internodes, branching angle) and at the microscopic levels (size and number of cells within the internode pith). At the macroscopic level, the laurina mutation acted only by decreasing the internode size. Neither the angle of branching nor the number of internodes was influenced by the mutation. At the microscopic level, the mutation lowered mainly the number of cells present along the longitudinal axis of the internode, and, at a lesser extent, the cell height. Especially, the internode size decreasing explained both the tree dwarfism and the tree-shape modification. In fact, the laurina mutation strengthened the dwarfism of plagiotropic internodes when compared to that of the orthotropic ones, and such an impact was mainly due to a strong cell number decrease. To summarize, two major pleiotropic effects of the laurina mutation can be explained only by a modification of the trade-off between meresis and auxesis during the internode growth. This opens new perspectives for the characterization of the other effects at the hormonal level, and then, for the identification of the gene at the molecular level.     

Head shape evolution in monitor lizards (Varanus): interactions between extreme size disparity,phylogeny and ecology

Characterizing patterns of observed current variation, and testing hypotheses concerning the potential drivers of this variation, is fundamental to understanding how morphology evolves. Phylogenetic history, size and ecology are all central components driving the evolution of morphological variation, but only recently have methods become available to tease these aspects apart for particular body structures. Extant monitor lizards (Varanus) have radiated into an incredible range of habitats and display the largest body size range of any terrestrial vertebrate genus. Although their body morphology remains remarkably conservative, they have obvious head shape variation. We use two‐dimensional geometric morphometric techniques to characterize the patterns of dorsal head shape variation in 36 species (375 specimens) of varanid, and test how this variation relates to size, phylogenetic history and ecology as represented by habitat. Interspecific head shape disparity is strongly allometric. Once size effects are removed, principal component analysis shows that most shape variation relates to changes in the snout and head width. Size‐corrected head shape variation has strong phylogenetic signal at a broad level, but habitat use is predictive of shape disparity within phylogenetic lineages. Size often explains shape disparity among organisms; however, the ability to separate size and shape variation using geometric morphometrics has enabled the identification of phylogenetic history and habitat as additional key factors contributing to the evolution of head shape disparity among varanid lizards.     

Molecular phylogeny, scale evolution and taxonomy of centrohelid heliozoa

Heliozoa are ubiquitous, unicellular phagotrophs with slender radiating axopodia for trapping prey. We sequenced 18S rRNA genes from 35 cultured centrohelid heliozoa (18 studied by electron microscopy) and 28 environmental libraries (18 freshwater, 10 marine), yielding 97 new sequences, this exceeding described species. Phylogenetic analyses show two major groups and that ancestral centrohelids probably had inner plate-like tangential and distinct outer radial silica scales, the latter diverging early into contrasting scale types seen in extant Pterocystis/Choanocystis and Acanthocystis/Raphidiophryidae. Scales were lost at least thrice. Pterocystis is paraphyletic, as was the classical family Acanthocystidae; Heterophrys was polyphyletic. Using scale morphology and rRNA sequences, we establish new families Pterocystidae (Pterocystis, Raineriophrys, Chlamydaster), Marophryidae (type Marophrys (Heterophrys) marina gen. et comb. nov.) and Choanocystidae, new suborders Pterocystina (Pterocystidae, Choanocystidae, Heterophryidae) and Acanthocystina (Acanthocystidae, Raphidiophryidae, Marophryidae), and ten new Pterocystis, Acanthocystis and Choanocystis species. Most clades are exclusively freshwater or exclusively marine; evolutionary transitions between these habitats have been rare.     

The shape of mammalian phylogeny: patterns, processes and scales

Mammalian phylogeny is far too asymmetric for all contemporaneous lineages to have had equal chances of diversifying. We consider this asymmetry or imbalance from four perspectives. First, we infer a minimal set of 'regime changes'-points at which net diversification rate has changed-identifying 15 significant radiations and 12 clades that may be 'downshifts'. We next show that mammalian phylogeny is similar in shape to a large set of published phylogenies of other vertebrate, arthropod and plant groups, suggesting that many clades may diversify under a largely shared set of 'rules'. Third, we simulate six simple macroevolutionary models, showing that those where speciation slows down as geographical or niche space is filled, produce more realistic phylogenies than do models involving key innovations. Lastly, an analysis of the spatial scaling of imbalance shows that the phylogeny of species within an assemblage, ecoregion or larger area always tends to be more unbalanced than expected from the phylogeny of species at the next more inclusive spatial scale. We conclude with a verbal model of mammalian macroevolution, which emphasizes the importance to diversification of accessing new regions of geographical or niche space.     

Density,biomass, and guild structure of arboreal arthropods as related to their inhabited tree size in aCryptomeria japonica plantation

Arboreal arthropods in a 15-year-old plantation ofCryptomeria japonica were surveyed using the smoking method under open conditions and also in the enclosed condition in which the whole above-ground part of a tree was covered by a cloth bag. Per tree, the number of individuals collected was 8200–14000, with a biomass of 340–1700 mg d.wt. Collembola and Acarina were major components in number, while Diplopoda, Collembola, and Araneae occupied the larger part of the biomass. About 60–70% of total numbers of individuals dropped within two hours after the open fumigation. Clear power-form regressions between total numbers of individuals and biomasses of all animals and their host tree size (stem diameter at clear length,D _B ) showed they were approximately proportional toD _B ². The guilds of scavengers and tourists demonstrated the most significant correlations between their numbers and biomasses and the tree size. Numbers and biomasses of Collembola, Diptera, and Araneae revealed remarkable dependence on the tree size. From these regressions, numbers of individuals and biomasses per unit ground area were estimated for all arthropods to be 3755/m² and 165.87 mg d.wt./m², respectively. Power-form regressions were observed between numbers and biomasses of prey and predators. The number-and biomass ratios of all predators to all prey tended to decrease with increasing tree size. A similar trend was observed in the corresponding ratios of parasitic Hymenoptera to lepidopteran larvae, while those of Araneae to Collembola were almost constant, irrespective of tree size.     

Ichthyosauria: their diversity, distribution, and phylogeny

The Ichthyosauria is the group of Mesozoic marine reptiles that was most highly adapted to the aquatic environment. The first ichthyosaurs from the upper Lower Triassic (Spathian) already show a suite of unique characters (very large eyes, elongate snout, deeply amphicoelous vertebrae, limb modified to fins) correlated with a fully aquatic existence and probably were unable to leave the water. The key evolutionary innovation was vivipary, giving birth to live young, which is documented by the fossil record since the end of the Anisian. Major evolutionary trends in the locomotor apparatus are the increasing modification of the fin skeleton to a mosaic of bones and the change from anguiliform swimming in the earliest forms to thunniform swimming in the Jurassic and later forms, as evidenced by the shortening of the body and the evolution of a semilunate tail fin. Almost from the beginning, ichthyosaurs had a cosmopolitan distribution which was retained until their extinction in the Cenomanian. Ichthyosaurian diversity is greatest in the Middle Triassic with piscivorous, heterodont, and durophagous forms. Jurassic diversity is greatest in the Liassic, declining to one genus (Platypterygius) in the Cretaceous. Although skull characters indicate that ichthyosaurs were diapsids, their exact position within Diapsida is unclear. A cladistic analysis of the well known genera clarifies relationships within the Ichthyosauria. Most basal areGrippia andUtatsusaurus, followed by the Mixosauridae (Mixosaurus andPhalarodon). The Shastasauridae (Cymbospondylus, Shonisaurus, Besanosaurus) are the most advanced Triassic forms and represent the sistergroup of all post-Triassic ichthyosaurs. These are clearly monophyletic and are termed here the Neoichthyosauria.     

Hominid teeth and their relationship to hominid phylogeny

Hominid fossil teeth are analyzed in terms of size and shape and contrasted with teeth from a modern population to determine boundaries that can be placed on a reconstruction of the hominid phylogeny. Teeth alone are considered as they are the only material preserved in large enough quantities to measure population variability accurately. Problems with the use of indices such as size and shape as species markers are discussed. Conclusions that are made about possible phylogenies are based on the analysis of size and shape.     

亚洲树轮平均敏感度分布特征及其影响因素

树轮敏感度是指示树轮对气候变化敏感程度的重要统计参数,研究大尺度树木敏感度的分布特征及其影响因素有助于理解树木生长和气候的相互关系.本文使用来自国际树轮库(ITRDB)的573条树轮宽度记录,研究亚洲树轮敏感度的分布特征及可能的影响因素.结果表明: 在干旱地区和温度较低的区域,树木的平均敏感度更高,降水对敏感度的影响强于温度.平均敏感度随海拔的上升表现出下降-上升-下降的波动变化.这种波动与降水随着海拔表现的上升-下降-上升的变化相吻合,说明海拔变化导致的降水改变可能是导致平均敏感度变化的重要因素之一.不同树种生理性状的差异导致其敏感度差异较大,祁连圆柏、西藏白皮松等阳生树种由于耐旱性而具有更高的敏感度,而阴生树种如云杉属和冷杉属则敏感度较低;老龄树可能具有更高的敏感度.