Correlations among assays of porcine semen quality following cryopreservation

Correlations between in vitro tests of semen quality, used to predict the in vivo fertilizing potential of sperm, indicate that the tests may substitute for each other in predicting fertilizing potential. Lack of correlation between tests suggest that both tests should be used to estimate the fertilizing potential. The purpose of this study was to establish correlations between several in vitro tests of porcine semen quality following freezing. Tests of motility with and without caffeine, spermatozoa with normal apical ridges, sephadex filtration with and without caffeine and acrosin activity were all correlated with each other. Correlations among these tests ranged from 0.45 to 0.83 (P<0.05). Assays for glutamic oxalacetic transaninase (GOT) were not consistently correlated with other tests. None of these tests of semen quality were correlated with the sperm penetration assay except for the test of motility without caffeine, which was correlated with the number of penetrations per hamster oocyte (r = 0.71, P<0.05).     

Avoiding erroneously high levels of detection in combinations of semi-independent tests

A randomization procedure is proposed which allows statistical tests to be combined into a single test to maintain specified and acceptable levels of false detection. This method was applied to the problem of detecting density dependence in 135 unpublished time-series (of 10 generations) from insect populations, and to simulated density-dependent and density-independent data, so that the correctness of observed levels of detection from the published data could be verified. To allow the application of the randomization procedure to Bulmer's (1975) tests and Varley and Gradwell's (1960) test, these were recast as randomization tests. The randomization procedure was tested with 39 combinations of tests for density dependence (and limitation/attraction); it generally producedcombined tests with levels of detection that were intermediate between detection levels of the constituent tests (and hence was limite by these). The specified rate of false detection (5%) was never exceeded (by more than 1%) when combined tests were applied to time-series from a random-walk model. Two different combinations of tests produced levels of detection from the published time-series which were slightly greater than their constituent tests when they were combined into single tests. These were the randomized form of Bulmer's (1975) first test with the tests of Pollard et al. (1987) and Reddingius and den Boer (1989) with the randomized form of Bulmer's second test. The combination of Bulmer's first and Pollard et al.'s test produced a greater level of detection (21.5%) than any other single test or combination of tests. These results were confirmed by the analysis of modelled density dependent data. Although the increase in power of combinations of tests over single tests is small with the data we used, the combined tests (listed above) had rates of detection that were less influenced by the form of data (of two forms of density-dependent data) than were their constituent tests. Hence, it appears that the combined tests are of greater generality than single test statistics. The method presented here for combining several statistical tests into a single randomization test is applicable in many other areas of ecology where we wish to apply several tests and take the most probable result of these; and if the tests being conducted are, or can be expressed as, randomization tests.     

Bayesian approaches to modeling the conditional dependence between multiple diagnostic tests

Many analyses of results from multiple diagnostic tests assume the tests are statistically independent conditional on the true disease status of the subject. This assumption may be violated in practice, especially in situations where none of the tests is a perfectly accurate gold standard. Classical inference for models accounting for the conditional dependence between tests requires that results from at least four different tests be used in order to obtain an identifiable solution, but it is not always feasible to have results from this many tests. We use a Bayesian approach to draw inferences about the disease prevalence and test properties while adjusting for the possibility of conditional dependence between tests, particularly when we have only two tests. We propose both fixed and random effects models. Since with fewer than four tests the problem is nonidentifiable, the posterior distributions are strongly dependent on the prior information about the test properties and the disease prevalence, even with large sample sizes. If the degree of correlation between the tests is known a priori with high precision, then our methods adjust for the dependence between the tests. Otherwise, our methods provide adjusted inferences that incorporate all of the uncertainty inherent in the problem, typically resulting in wider interval estimates. We illustrate our methods using data from a study on the prevalence of Strongyloides infection among Cambodian refugees to Canada.     

Effects of severe prior exercise on assessment of maximal oxygen uptake

Five moderately fit males (50.8 ml.kg-1.min-1) performed 14 continuous type VO2 max tests on a motor-driven treadmill. Randomly assigned experimental sessions, consisting of three tests each and separated by 10 (tests 1, 2, 3), 20 (tests 4, 5, 6), 30 (tests 7, 8, 9), or 40 (tests 10, 11, 12) min, were conducted at a consistent hour for each subject every 4th day. Two separately performed tests were also included in the random assignment with the test eliciting the highest VO2 max value designated as the standard reference (SR). VO2 max values for tests 1 through 12 were not significantly different from the SR in spite of elevated pretest blood lactate concentrations ranging from 5 mM to 16 mM. Performance time was reduced for all tests other than tests 1, 4, 7, and 10, reaching the level of statistical significance (P less than 0.05) in tests 2, 3, 5, 6, and 9. It was concluded that valid and reliable assessment of VO2 max is possible even though testing is initiated with subjects in varying stages of exhaustion.     

Multi-Biochemical Test System for Distinguishing Enteric and Other Gram-Negative Bacilli

A multi-biochemical test system consisting of nine tests, entitled Enterotube, was evaluated in parallel with conventional tests to determine its value in the identification of enteric and certain other gram-negative bacilli. The 242 bacterial strains studied were from a variety of pathological specimens and from our culture collection. When the results with individual tests represented in both test systems were compared, no discrepancies were noted in the indole test, and one discrepancy was recorded for dextrose. In 7 of 242 hydrogen sulfide tests, 3 of 242 phenylalanine tests, 22 of 242 urease tests, 15 of 242 dulcitol tests, 12 of 242 lactose tests, 27 of 217 lysine decarboxylase tests, and 5 of 242 citrate tests, the Enterotube results were contrary to those obtained with conventional methods. The lysine decarboxylase test in the Enterotube posed a problem of interpretation and readability and is not an acceptable alternative to the conventional methods. Fifteen of the strains studied were incorrectly identified by the Enterotube system and four could not be differentiated from other closely related strains. Salmonella could be identified as to group, whereas Shigella strains were frequently misidentified as Escherichia. The Enterotube method is simple and convenient, and all media are inoculated at once from a single colony.     

A Clinical Comparison Between the Friedman Test and an in Vitro Test for Pregnancy

Latex pregnancy tests were performed on 737 urine samples submitted to a hospital laboratory for Friedman tests. Clinical confirmation of the diagnoses was obtained in 666. Nine Friedman and 31 latex tests were falsely positive in 199 samples having specific gravities over 1.015. Each test gave four false-positive results in 65 samples with specific gravities under 1.015. Between six and 13 weeks of gestation, nine Friedman and 45 latex tests were negative in 176 samples with specific gravities above 1.015; below 1.015, five Friedman and 15 latex tests were false in 42 samples. At other stages of pregnancy, seven Friedman and 18 latex tests were negative in 56 samples with specific gravities over 1.015 and, under 1.015, nine samples had four negative latex tests.The latex test requires careful control and is less reliable than the Friedman test.     

Sexual behavior in aging male rhesus macaques: Effects of test duration on sexual performance

The sexual behavior displayed by nine old (20-year and older) rhesus (Macaca mulatta) males in 10-min tests was compared to that displayed in 1-hr tests. The tests were part of a long-term study on the decline in male sexual activity that accompanies old age. The males were paired with 10 ovariectomized, estrogentreated females in two blocks of 10 tests; each male was tested once with each female in each test block. The percentages of males that achieved intromissions and ejaculated in the two test blocks were the same (P < 0.05). Although the percentage of tests in which males displayed these behaviors was higher in the longer-test block (P > 0.05), there was a significant positive correlation of performance in 10-min tests with performance in 1-hr tests. Assuming a random distribution of contacting, mounting, intromission, and ejaculation throughout the hour, we would have predicted a significantly lower number of these behaviors in the first 10 min of the 1-hr tests than we actually observed. The mean percentages of 1-hr tests with contacting, mounting, intromission, and ejaculation was significantly lower than that of 10-min tests conducted with the same males 11 years earlier. Thus, the decline in sexual performance was not an artifact of the limited (10-min) test duration.     

Limitations of immunofluorescence tests in the diagnosis of infectious mononucleosis

The relative value of heterophil agglutinins (HA) and of specific EBV antibodies in the diagnosis of infectious mononucleosis (IM) was assessed in 108 cases of the disease and in 280 controls. Among the 108 cases 93 were HA-positive by sheep cells in at least one of their sera, while 15 were HA-negative by the same test. Among the 280 controls false-positive HA tests were not encountered except in eight cases with the horse cell microtitre tests. With one of the two slide tests at least two false-positive tests and 12 false-negative tests were also found but these sera had low titres in microtitre tests. The HA life-span was found to be unexpectedly long in a few cases, sheep cell HA lasting up to 8 to 10 months and horse cell HA up to 21 to 23 months.Many false-positive tests may therefore not be true false-positives and may result from the persistence of HA following unrecognized mononucleosis months before. Virtually all cases of IM had (or developed) antibodies to Epstein-Barr virus, viral capsid antigen (EBV-VCA), whereas only half of the controls were EBV-VCA-positive. The comparative analysis of nonspecific and specific test results in mononucleosis allows the following conclusions: (1) horse cell microtitre tests and the monospot test are more sensitive than sheep cell microtitre tests and the monotest; (2) false-negative results are occasionally seen with the latter tests but not with the former; (3) more false-positive results, however, are probably seen with the former tests; and (4) specific EBV-IgM and EBV-EA antibody tests are useful in the diagnosis of selected borderline cases of mononucleosis.     

Effects of metals on fish behavior: a review

Synopsis Behavioral toxicity tests, if properly designed, can be used in conjunction with standard acute lethality tests, chronic full or partial life cycle tests, and early life stage toxicity tests to add ecological realism to toxicant assessments and the regulations made as an outgrowth of these assessments. Changes in certain fish behaviors, especially cough rate and avoidance reactions, are very sensitive indicators of sublethal exposure to metals. Other tests involving predator avoidance, feeding behavior, learning, social interactions, and a variety of locomotor behaviors show promise but have been insufficiently studied to judge their sensitivity or utility. No behavioral tests have been standardized and few have been verified in the field. We discuss the behavioral tests that have been used with metals, examine their sensitivity compared with standard laboratory toxicity tests, and assess the potential ecological significance of the behavioral changes observed.Journal Paper No. .1-11959 of the Iowa Agriculture and Home Economics Experiment Station, Ames, IA 50011. U.S.A. Project No. 2627.     

The identification of diphtheria, tetanus and pertussis vaccines by single radial and double immunodiffusion techniques

The identification tests for adsorbed diphtheria, tetanus and pertussis vaccines, which are required by the European Pharmacopoeia to be undertaken in animals, may be replaced by precipitation tests, for instance in agaros gels. Such in vitro tests eliminate the use of animals and are less expensive and time-consuming. The single radial immunodiffusion technique is a suitable semiquantitative test, while the double diffusion test is necessary for the investigation of complete or partial identity. The precipitates obtained in the single radial diffusion tests and in double diffusion tests with diphtheria toxoid were visible without staining; those obtained in the double diffusion tests with tetanus toxoid were weaker and staining was sometimes needed.     

Selection of social traits in juvenile Japanese quail affects adults’ behaviour

The inability of animals to cope with their social environment in husbandry systems could be a major source of problems for both animal welfare management and economy. In this context, previous studies selected lines of domestic Japanese quail diverging for their level of social reinstatement, hypothesizing that quail with high levels of social motivation would adapt better to crowded social situations than quail with low levels of social motivation. However, these selections were based only on social motivation evaluated in young birds. As behavioural traits can vary with age, this study analysed the persistence of selected social traits into adulthood. With this in mind, we used several behavioural tests to estimate social motivation of adult females from selected lines for high social reinstatement (HSR, n = 24) and for low social reinstatement (LSR, n = 24). The tests were: open-field tests, emergence tests, separation tests, runway tests and confrontation tests. As birds’ behaviour in these tests can be influenced by the emotive characteristics of the subjects, we measured the emotional reactivity of quail not only during these tests but also in specific emotive tests: tonic immobility tests. Our results showed that the social motivation characteristics of birds persist in adulthood. Adult HSR females still presented a higher social motivation than adult LRS females: their response to social isolation was stronger and their motivation to reach conspecifics and to stay close to them was higher. However, the behavioural expression of social motivation appeared to be modified during development. Whereas vocal behaviour reflected the social motivation of chicks, in isolated contexts, this characteristic was not observed in adult quail.     

The testing of disinfectants

Although all disinfectant tests have the same final purpose, namely measuring the antimicrobial activity of a chemical substance or preparation, a large number of testing methods has been described. They are subdivided into suspension tests, carrier and surface disinfection tests and other practice-mimicking tests. The suspension tests comprise qualitative and quantitative suspension tests, and, as derived tests, the determination of the phenol coefficient and capacity tests. There is an essential difference between a carrier test and a surface disinfectant test: in the former case the carrier is submerged in the disinfectant solution during the whole exposure time, whereas in the latter case the disinfectant is applied on the carrier for the application time and thereafter the carrier is drying during the exposure.The basic principle now widely accepted is that the antimicrobial efficiency of a disinfectant is examined at three stages of testing.The first stage concerns laboratory tests in which it is verified whether a chemical compound or a preparation possesses antimicrobial activity. For these preliminary screening tests, suspension tests are considered.In the second stage of tests, disinfection procedures and not disinfectants are examined. It is determined under which conditions and at which use-dilution for a given application the preparation is active: the tests simulate real-life situations; such tests are carrier tests for the disinfection of materials by submersion and surface disinfection tests.The last stage takes place in the field, and comprises the in-loco or in-situ tests with as variants the in-use tests, which examine whether, after a normal period of use, germs are still killed by the disinfectant solution.It is the task of the European and international standardization organisations to develop new standards and to elaborate tests, which predict the effectiveness of a preparation in practice under variable circumstances.     

The use of methanol extract of Leptospira interrogans in complement fixation tests for leptospirosis

Methanol extracts were obtained from L. interrogans serovars icterohaemorrhagiae and canicola and L. biflexa serovar patoc. Human sera from 167 normal individuals and 40 patients with different infectious diseases tested by complement fixation tests showed negative reactions. Sera from 100 patients with a suspicion of leptospirosis were tested by complement fixation tests and microscopic agglutination reactions. Agreement of 84% was found for those two reactions. Positive microscopic agglutination tests at a dilution 1:20-1:400 with negative complement fixation tests were observed in 5% of patients and negative microscopic agglutination with complement fixation tests in the range of 1:20-1:1280 were observed in 11% of the cases.     

Decrease of the slow phase velocities of postrotatory nystagmi as a result of the otolith organs stimulation

Intact pigeons were rotated in darkness in a horizontal plane at various orientations relative to axis of rotation, which passed between labyrinths, or was displaced relative to them. Trapezoidal (tests 1) and triangular (tests 2) rotation programs were used. In the tests 1, positive and negative angular accelerations were separated by two-minute periods of rotation with constant angular velocity. Such periods were absent in the tests 2. Results of the canal-otolith interactions in the tests 1 and 2 were different only in postrotatory nystagmi: the peak velocities of the slow phases decreased in both postrotatory nystagmi in the tests 1, but only in one of them in the tests 2. Apparently, at oppositely directed postrotatory nystagmi, decrease of peak velocities in the tests 1 is provided with different mechanisms. At one of them the decrease of nystagmus velocity reflects a result of a summation of canal and otolithic signals on the interneurones of the semicircular canal reflex arches, whereas at another one it is related with long-lasting activity imbalance of these interneurones which is supported by otolithic afferentation during rotation at constant angular velocity.     

The Influence of Angiotensin Infusion on the Urine Composition in Individual Kidney Function Tests

Thirty-two patients with hypertension were given a pressor dose of angiotensin in the course of individual kidney function tests. In eight patients with unilateral renal artery stenosis the differences in urine sodium and creatinine concentration between the affected and the nonaffected kidney did not become greater with angiotensin infusion. In four patients with unilateral pyelonephritis and falsely positive individual kidney function tests, these tests became normal following angiotensin infusion. It is concluded that angiotensin infusion is not a useful means of improving the results of individual kidney function tests.     

Can Amphipod Behavior Help to Predict Chronic Toxicity of Sediments?

Amphipods are widely used in both acute and chronic (sub-lethal) sediment tests. Acute sediment tests provide relatively rapid results, but may fail to detect moderately toxic contaminants that are bound to the sediment, whereas chronic life-cycle tests are rarely performed as they are time consuming and expensive. Observations during chronic testing of oil-contaminated sediment suggested that there may be a link between the behavior of the marine amphipod Corophium volutator and reduction in growth rate. Behavior tests were performed with six individual amphipods per treatment using sediment spiked with weathered Forties oil with burrowing time, re-emergence from sediment, and activity prior to burrowing as endpoints. Further behavior tests were used to predict the chronic toxicity of sediments spiked with three crude oils each with a dominant unresolved complex mixture of hydrocarbons (UCM). The effect of sediment type on behavior was also investigated. The results suggested that although the behavior test could not be used alone as a viable alternative to sediment toxicity tests, it could prove useful as an adjunct to acute tests, and help select sediments that deserve further investigation.     

Size and Power of Test Statistics for Gene Correlation in 2 × 2 Contingency Tables

Monte Carlo simulation of size and power of two proposed tests for linkage disequilibrium between two genes each with two alleles were investigated. Results were compared with two commonly used statistics, the correlation coefficient r and the log-odds ratio tests. Depending on the sign of the linkage disequilibrium, the new tests were found to be more powerful than either of the correlation or log-odds ratio tests. However, on average (positive and negative linkage disequilibrium) the Chi-square test using the correlation coefficient was to a small extent more powerful than the other tests.     

Clinical Utility of Microarrays: Current Status, Existing Challenges and Future Outlook

Microarray-based clinical tests have become powerful tools in the diagnosis and treatment of diseases. In contrast to traditional DNA-based tests that largely focus on single genes associated with rare conditions, microarray-based tests are ideal for the study of diseases with underlying complex genetic causes. Several microarray based tests have been translated into clinical practice such as MammaPrint and AmpliChip CYP450. Additional cancer-related microarray-based tests are either in the process of FDA review or under active development, including Tissue of Tumor Origin and AmpliChip p53. All diagnostic microarray testing is ordered by physicians and tested by a Clinical Laboratories Improvement Amendment-certified (CLIA) reference laboratory. Recently, companies offering consumer based microarray testing have emerged. Individuals can order tests online and service providers deliver the results directly to the clients via a password-protected secure website. Navigenics, 23andMe and deCODE Genetics represent pioneering companies in this field. Although the progress of these microarray-based tests is extremely encouraging with the potential to revolutionize the recognition and treatment of common diseases, these tests are still in their infancy and face technical, clinical and marketing challenges. In this article, we review microarray-based tests which are currently approved or under review by the FDA, as well as the consumer-based testing. We also provide a summary of the challenges and strategic solutions in the development and clinical use of the microarray-based tests. Finally, we present a brief outlook for the future of microarray-based clinical applications.