<Emphasis Type="Italic">Cannabis</Emphasis> is indigenous to Europe and cultivation began during the Copper or Bronze age: a probabilistic synthesis of fossil pollen studies

Conventional wisdom states Cannabis sativa originated in Asia and its dispersal to Europe depended upon human transport. Various Neolithic or Bronze age groups have been named as pioneer cultivators. These theses were tested by examining fossil pollen studies (FPSs), obtained from the European Pollen Database. Many FPSs report Cannabis or Humulus (C/H) with collective names (e.g. Cannabis/Humulus or Cannabaceae). To dissect these aggregate data, we used ecological proxies to differentiate C/H pollen, as follows: unknown C/H pollen that appeared in a pollen assemblage suggestive of steppe (Poaceae, Artemisia, Chenopodiaceae) we interpreted as wild-type Cannabis. C/H pollen in a mesophytic forest assemblage (Alnus, Salix, Populus) we interpreted as Humulus. C/H pollen curves that upsurged and appeared de novo alongside crop pollen grains we interpreted as cultivated hemp. FPSs were mapped and compared to the territories of archaeological cultures. We analysed 479 FPSs from the Holocene/Late Glacial, plus 36 FPSs from older strata. The results showed C/H pollen consistent with wild-type C. sativa in steppe and dry tundra landscapes throughout Europe during the early Holocene, Late Glacial, and previous glaciations. During the warm and wet Holocene Climactic Optimum, forests replaced steppe, and Humulus dominated. Cannabis retreated to steppe refugia. C/H pollen consistent with cultivated hemp first appeared in the Pontic-Caspian steppe refugium. GIS mapping linked cultivation with the Copper age Varna/Gumelni?a culture, and the Bronze age Yamnaya and Terramara cultures. An Iron age steppe culture, the Scythians, likely introduced hemp cultivation to Celtic and Proto-Slavic cultures.     

Origins of native vascular plants of antarctica: Comments from a historical phytogeography viewpoint

The article provides an overview of the problem of the origin of the only native vascular plants of Antarctica, Deschampsia antarctica (Poaceae) and Colobanthus quitensis (Caryophyllaceae), from the viewpoint of modem historical phytogeography and related fields of science. Some authors suggest the Tertiary relict status of these plants in Antarctica, while others favor their recent Holocene immigration. Direct data (fossil or molecular genetic data) for solving this controversy are still lacking. However, there is no convincing evidence supporting the Tertiary relict status of these plants in Antarctica. Most probably, D. antarctica and C. quitensis migrated to Antarctica in the Holocene or Late Pleistocene (last interglacial?) through bird-aided long-distance dispersal. It should be critically tested by (1) appropriate methods of molecular phylogeography; (2) molecular clock methods, if feasible; (3) direct paleobotanical studies; (4) paleoclimatic reconstructions; and (5) comparison with cases of taxa with similar distribution/dispersal patterns. The problem of the origin of Antarctic vascular plants is a perfect model for integration of modern methods of molecular phylogeography and phylogenetics, population biology, paleobiology, and paleogeography for solving a long-standing enigma of historical plant geography and evolution.     

Multi-approach analysis of the diversity in <Emphasis Type="Italic">Colletotrichum cliviae</Emphasis> sensu lato

Colletotrichum cliviae is a fungal species reported both as pathogen and endophyte with broad geographical distribution. Some purported isolates of this species have been assigned to different taxa, including Colletotrichum aracearum, Colletotrichum orchidearum and Colletotrichum. sichuanensis, for which a preliminary analysis of extensive multilocus (ACT, GAPDH, ITS, TUB2) data in this study revealed high sequence similarity with C. cliviae. We further reassessed the species delineation by using the coalescent method of the generalized mixed Yule-coalescent (GMYC) and Poisson Tree Processes (PTP). Single and multilocus gene trees strongly supported a C. cliviae s. lat. clade including the four species. This clade unfolded eight subclades grouped into three distinct lineages, but no monophyly of any of the four species. GMYC and PTP analyses confidently supported the evolutionary independence of these lineages. C. sichuanensis and C. cliviae, except one isolate, formed the largest lineage. The second lineage was made up of isolates named C. aracearum and some of C. orchidearum sharing the haplotype and the third lineage accommodated two isolates named C. cliviae and C. orchidearum. This finding suggests the synonymization of C. sichuanensis with C. cliviae whereas the taxonomic status of C. aracearum and C. orchidearum still needs clarification. This study lays great stress upon the use of comprehensive data for sequence-based characterisation of species in the C. cliviae s. lat. It also presents the first report of C. cliviae in tropical Africa and on citrus host.     

Two for one: inadvertent introduction of <Emphasis Type="Italic">Euglandina</Emphasis> species during failed bio-control efforts in Hawaii

The introduction of the predatory land snail, Euglandina rosea (Férrusac, 1821) from Florida to Hawaii to control the giant African snail, Lissachatina fulica (Bowdich, 1822) is among the most publicized biological control cases gone awry. Following preliminary genetic analyses that revealed a second, possibly undescribed Euglandina species was probably introduced to Hawaii, we used an integrative systematic approach combining both genetic and morphological assessments to examine the taxonomic status of the snail referred to as E. rosea in Hawaii. Genetic and morphological analyses support the interpretation that two Euglandina species were introduced to and have become established in Hawaii and can be readily distinguished based on morphological differences. This finding has significant ramifications for understanding both historical and contemporary biocontrol as it suggests that: (1) other species may have been inadvertently introduced through bio-control programs, (2) inadequate understanding of the taxonomy of bio-control agents has obscured our ability to effectively study their ecological impacts, and (3) while the US has no comprehensive regulatory framework for importing biological control agents, one is urgently needed. This also has wide-ranging implications for conservation efforts throughout the tropics because Euglandina from Oahu, Hawaii were released on other Hawaiian Islands, New Guinea, Okinawa, Palau Islands, Philippines, India, Bonin Islands and Bermuda for use in biological control programs that led to catastrophic loss of endemic land snail diversity.     

Multilocus phylogeny of <Emphasis Type="Italic">Clonostachys</Emphasis> subgenus <Emphasis Type="Italic">Bionectria</Emphasis> from Brazil and description of <Emphasis Type="Italic">Clonostachys chloroleuca</Emphasis> sp. nov.

Phylogenetic analyses based on protein-encoding gene exons and introns of ATP citrate lyase (ACL1), beta tubulin (TUB), the largest subunit of RNA polymerase II (RPB1), and translation elongation factor 1-α (TEF1) are used for inferring the existence of a new Clonostachys species from the Cerrado biome in Brazil, described here as C. chloroleuca. The species produces dimorphic, primary, and secondary conidiophores that form consistently greenish conidial masses on artificial media. It resembles therefore C. rosea f. catenulata although it differs from this species by less adpressed branches in the secondary conidiophores. The new species is also phylogenetically related to C. byssicola and C. rhizophaga. Our inventory suggests that C. byssicola, C. chloroleuca, C. pseudochroleuca, C. rhizophaga, C. rogersoniana, and C. rosea commonly occur in native and agriculturally used soils of the Cerrado and Amazon Forest. Using sequences available from two genome-sequenced strains employed as biological control agents, we confirm the identity of the European strain IK726 as C. rosea and identify strain 67-1 from China as C. chloroleuca.     

Long-term forest composition and its drivers in taiga forest in NW Russia

Understanding the processes behind long-term boreal forest dynamics can provide information that assists in predicting future boreal vegetation under changing environmental conditions. Here, we examine Holocene stand-scale vegetation dynamics and its drivers at the western boundary of the Russian taiga forest in NW Russia. Fossil pollen and conifer stomata records from four small hollow sites and two lake sites are used to reconstruct local vegetation dynamics during the Holocene. Variation partitioning is used to assess the relative importance of the potential drivers (temperature, forest fires and growing site wetness) to the long-term stand-scale dynamics in taiga forest. All the main tree taxa, including the boreal keystone species Picea abies (Norway spruce) and Larix sibirica (Siberian larch), have been locally present since 10,000 cal yr bp. The constant Holocene presence of L. sibirica at three small hollow sites suggests a fast postglacial immigration of the species in northern Europe. Picea was present but not dominant at all study sites until its expansion between 8,000 and 7,000 cal yr bp markedly changed the forest structure through the suppression of Betula (birch), Pinus (pine) and Larix. Our results demonstrate that in general, the Holocene forest dynamics in our study region have been driven by temperature, but during short intervals the role of local factors, especially forest fires, has been prominent. The comparison between sites reveals the importance of local factors in stand-scale dynamics in taiga forests. Therefore, the future responses of taiga forest to climate change will be predominantly modulated by the local characteristics at the site.     

<Emphasis Type="Italic">Cantharellus</Emphasis> sect. <Emphasis Type="Italic">Amethystini</Emphasis> in Asia

In this contribution on the genus Cantharellus in Asia, C. subvaginatus is described from the Republic of Korea as a close relative to the Chinese C. vaginatus, which is here reported for the first time from India. Both species are here placed in Cantharellus subg. Cantharellus sect. Amethystini, together with the Indian C. pseudoformosus (syn.: C. umbonatus) and the Malayan C. subamethysteus. As such, Asia has suddenly become the continent with the highest diversity for Amethystini. Species delimitation in sect. Amethystini is molecularly supported by a combined phylogenetic analysis of rDNA sequences obtained for LSU and ITS and additionally suggests the existence of a still undescribed species in North America. Character variability is discussed for all known members of Amethystini, including atypical specimens of the North American C. lewisii that are morphologically more reminiscent of the South Korean C. subvaginatus.     

Life history traits determine the differential vulnerability of native and invasive apple snails (<Emphasis Type="Italic">Pomacea</Emphasis> spp.) to a shared juvenile-stage predator

The vulnerability of gastropods to their predators varies with life history traits such as morphology, body size, behavior, and growth rates as well as predator size. A recent study suggested that the invasive apple snail, Pomacea maculata, was considerably more vulnerable to crayfish predators than the native Florida apple snail, P. paludosa. The difference was hypothesized to be caused by the relatively small hatchling size of P. maculata. To test this hypothesis, we conducted a series of feeding assays designed to quantify maximum feeding rates and selective foraging of crayfish on apple snails. The rate at which crayfish killed individual P. maculata (i.e., kill rates) decreased with snail size, and kill rates on both species increased with crayfish size. Kill rates on juvenile P. maculata were higher than kill rates on size-matched hatchling P. paludosa, and crayfish fed selectively on P. maculata when offered mixed groups of size-matched snails. Further analyses revealed that hatchling P. paludosa possess shells 1.8× heavier than size-matched P. maculata suggesting differences in vulnerability to crayfish were consistent with interspecific differences in shell defenses. Differences in hatchling size and defensive traits in combination make crayfish kill rates on hatchling P. maculata approximately 15.4× faster than on hatchling P. paludosa, but the relative contribution of hatchling size to differences in apple snail vulnerability was >3× greater than the contribution of defensive traits.     

Mitochondrial Evidence of Refugial Distribution of the Pygmy Field Mouse <Emphasis Type="Italic">Sylvaemus uralensis</Emphasis> Pall. (Rodentia,Muridae) in the Northwestern Caucasus

Variation of the 838-bp fragment of the mitochondrial cytb gene was analyzed in Sylvaemus uralensis from the northern macroslope of the Western Caucasus. On the basis of two fixed nonsynonymous substitutions, cytb sequences of the population sample studied can be considered as a distinct Lago-Naki haplogroup, which is clustered in the European cytb lineage. As estimated on the basis of the known rate of substitutions per third codon position in S. sylvaticus, the population must have been isolated for all or a part of the last glaciation period (10000 to 100000 years ago). The observed differentiation of cytb haplotypes is indicative of the refugial distribution of S. uralensis in the northern macroslope of the Western Caucasus, as well as of a secondary contact between the Caucasian and the Russian Plain populations during the Holocene.     

Mammals in Last 30 to 7 ka Interval (Late Pleistocene-Early Holocene) in Southern Uruguay (Santa Lucía River Basin): Last Occurrences,Climate, and Biogeography

Fossiliferous Quaternary sedimentary beds in the Santa Lucía Basin (southern Uruguay) are potentially useful for the study of the last occurrences of extinct taxa, as well as the environmental and climatic patterns in the late Pleistocene to the early Holocene. They have provided a chronological framework (AMS ¹⁴C and Optically Stimulated Luminescence dates), a mammalian diversity and interpretations of last occurrence, the climatic-environmental setting, and some associated biogeographic processes. The ages produced encompass the last 30 to 7 ka interval (latest Pleistocene-early Holocene). The mammalian assemblage (36 genera, 24 species) includes typical South American late Pleistocene mammals, extinct species of extant genera, and some extant species that still exist elsewhere on the continent. The preservation pattern includes articulated and semi-articulated skeletons of large and small mammals. The presence in the southern Uruguayan Pampean area of some mammals currently inhabiting Patagonia, northwest and central Argentina (Dolichotis, Galea, Microcavia, Chaetophractus, Lagostomus, and Vicugna) is explained by the predominance of open areas and cold climates associated with the Last Glacial Maximum. The mammalian record depicts local extinctions or shifting ranges occurring in latest Pleistocene or early Holocene. The sedimentary chronological framework and taphonomic features suggest the persistence into the early Holocene of Eutatus seguini, Morenelaphus brachyceros, Equus neogeus, Hemiauchenia sp., Lama sp., and Vicugna sp. Glyptodon and Glossotherium seem to persist at least to the latest Pleistocene. This pattern can substantiate the hypothesis that some megafauna and large mammals persisted for some millennia alongside people with extinction occurring before, during, and after human colonization.     

Population structure and variability of Pacific herring (<Emphasis Type="Italic">Clupea pallasii</Emphasis>) in the White Sea,Barents and Kara Seas revealed by microsatellite DNA analyses

Pacific herring, Clupea pallasii, have recently colonised the northeast Atlantic and Arctic Oceans in the early Holocene. In a relatively short evolutionary time, the herring formed a community with a complex population structure. Previous genetic studies based on morphological, allozyme and mitochondrial DNA data have supported the existence of two herring subspecies from the White Sea and eastern Barents and Kara Seas (C. p. marisalbi and C. p. suworowi, respectively). However, the population structure of the White Sea herring has long been debated and remains controversial. The analyses of morphological and allozyme data have previously identified local spawning groups of herring in the White Sea, whereas mtDNA markers have not revealed any differentiation. We conducted one of the first studies of microsatellite variation for the purpose of investigating the genetic structure and relationship of Pacific herring among ten localities in the White Sea, the Barents Sea and the Kara Sea. Using classical genetic variance-based methods (hierarchical AMOVA, overall and pairwise F _ST comparisons), as well as the Bayesian clustering, we infer considerable genetic diversity and population structure in herring at ten microsatellite loci. Genetic differentiation was the most pronounced between the White Sea (C. p. marisalbi) versus the Barents and Kara seas (Chesha–Pechora herring, C. p. suworowi). While microsatellite variation in all C. pallasii was considerable, genetic diversity was significantly lower in C. p. suworowi, than in C. p. marisalbi. Also, tests of genetic differentiation were indicating significant differentiation within the White Sea herring between sympatric summer- and spring-spawning groups, in comparison with genetic homogeneity of the Chesha–Pechora herring.     

Activities of proteinases in invertebrate animals—Potential objects of fish nutrition. Effects of temperature,pH, and heavy metals

Differences in the degree of separate and combined effects of temperature, pH, and heavy metals (zinc, copper) on the trypsin-and chymotrypsin-like proteinase activities have been established in the whole body of some invertebrate animals—potential objects of fish nutrition: pond snail Lymnaeae stagnalis, orb snail Planorbarius purpura, zebra mussel Dreissena polymorpha, oligochaetes Tubifex sp. and Lumbriculus sp. in total, chironomid larvae Chironimus sp. and Ch. riparus, as well as crustacean zooplankton. It has been shown that enzymes of the potential prey at low temperature can compensate the low activity of intestinal proteinases of fish bentho- and planktophages.     

Morphological variability,chromosome polymorphism,and problems of identifying individual species of gobies of the group <Emphasis Type="Italic">Ponticola</Emphasis> (Gobiidae) and assessing taxonomic relations of local populations

In connection with the problems of identification of certain species of the genus Ponticola, and especially their juveniles, morphological and genetic studies of gobies collected in the northwestern part of the Black Sea basin were carried out using literature data and museum collections. Karyological data indicate a distinct species status of western (P. odessicus) and eastern (P. eurycephalus) mushroom gobies; the range of the latter includes not only the Sea of Azov but also waters of the Black Sea coast of the Crimean Peninsula; these conclusions are supported by preliminary molecular genetic studies. Based on the obtained results of intraspecific morphological variability of species, we propose morphological characteristics for identification of adult P. syrman and P. odessicus, as well as a specific set of characteristics to identify juvenile (body length less than 50 mm) P. syrman, P. kessleri, and P. odessicus. We reveal differences in the karyotype structure of P. syrman from populations of the Sasyk Lake and the Don River, which do not differ in terms of external morphological characteristics and variability of cytochrome b haplotypes. The need for further research of phylogeography and morphological and karyological variability of P. syrman sensu lato is assumed.     

A re-evaluation of diversity of the Aporocotylidae Odhner, 1912 in <Emphasis Type="Italic">Siganus fuscescens</Emphasis> (Houttuyn) (Perciformes: Siganidae) and associated species

The aporocotylid fauna of the mottled spinefoot, Siganus fuscescens (Houttuyn), from Moreton Bay, Queensland, Australia, was characterised using a combined morphological and molecular approach. Four aporocotylid species were identified, three belonging to the genus Ankistromeces Nolan & Cribb, 2006 and one to Cardicola Short, 1953. Specimens of Cardicola matched an undescribed species from the same host and locality; this species is described as Cardicola mogilae n. sp. Phylogenetic analyses of ITS2 and 28S data showed that C. mogilae n. sp. forms a strongly supported clade with other Cardicola species from siganid fishes. We record Ankistromeces olsoni Nolan & Cribb, 2006 in Moreton Bay for the first time, redescribe A. dunwichensis Nolan & Cribb, 2006 on the basis of new specimens and sequence data and re-report Ankistromeces sp. X from Moreton Bay based on molecular data. We review the status of the ten putative species of aporocotylids reported from siganids. Small variation in ITS2 rDNA sequences, in association with different geographic localities, was previously used to separate Cardicola lafii Nolan & Cribb, 2006 from C. parilus Nolan & Cribb, 2006, C. bartolii Nolan & Cribb, 2006 from C. watsonensis Nolan & Cribb, 2006, C. tantabiddii Nolan & Cribb, 2006 from Cardicola sp. 2, Ankistromeces sp. Y from A. olsoni and Ankistromeces sp. X from Ankistromeces sp. Z. These five combinations are reinterpreted as each representing a single species; Cardicola lafii is recognised as the senior synonym of C. parilus and C. bartolii as the senior synonym of C. watsonensis. This study thus suggests that six, rather than ten, species should be recognised as infecting S. fuscescens. This richness remains greater than is known for any other fish species and siganids are, so far, unique among fishes in harbouring two strongly radiated lineages of aporocotylids.     

Phylogenetic and taxonomic assessment of the endangered Cumberland bean, <Emphasis Type="Italic">Villosa trabalis</Emphasis> and purple bean, <Emphasis Type="Italic">Villosa perpurpurea</Emphasis> (Bivalvia: Unionidae)

Inadequate understanding of the phylogeography, taxonomy, and historical distribution of two critically imperiled freshwater mussels, Cumberland bean, Villosa trabalis, and purple bean, Villosa perpurpurea, has hindered management and recovery actions related to population restoration within their extant ranges. For more than 100 years, the purple-to-pink nacre of V. perpurpurea and white nacre of V. trabalis have been the only defining phenotypic characteristics used to distinguish each species. Genetic samples were analyzed from 140 individuals collected from 10 streams located in Virginia, Tennessee, and Kentucky, representing all known extant populations of each species. A 784-bp section of the mitochondrial DNA ND1 region was sequenced to assess the phylogeography and taxonomic validity of these taxa. Results of our phylogenetic analyses showed 100 % Bayesian posterior support for two distinct clades, one occurring in the Cumberland River basin and the other in the Tennessee River basin, separated by a mean genetic distance of 4 %. Mean genetic distances between haplotypes within each clade was <1 %. Among individuals from the Cumberland River basin, the nacre of shells was white to bluish-white, but in the Tennessee River basin, nacre graded from white to pink to dark purple; thus, nacre color is a variable and inconsistent character in nominal V. trabalis and V. perpurpurea occurring in the Tennessee River basin. Our data suggest that these morphologically similar species do not co-occur, as was previously believed. Instead, we conclude that the two species most likely share a common ancestor, but became isolated within each basin and experienced allopatric speciation. Updates to nomenclature, taxonomic placement, and recovery plans for the investigated species are needed.     

Usefulness of the Non-conventional <Emphasis Type="Italic">Caenorhabditis elegans</Emphasis> Model to Assess <Emphasis Type="Italic">Candida</Emphasis> Virulence

Invasive candidiasis is caused mainly by Candida albicans, but other Candida species have increasing etiologies. These species show different virulence and susceptibility levels to antifungal drugs. The aims of this study were to evaluate the usefulness of the non-conventional model Caenorhabditis elegans to assess the in vivo virulence of seven different Candida species and to compare the virulence in vivo with the in vitro production of proteinases and phospholipases, hemolytic activity and biofilm development capacity. One culture collection strain of each of seven Candida species (C. albicans, Candida dubliniensis, Candida glabrata, Candida krusei, Candida metapsilosis, Candida orthopsilosis and Candida parapsilosis) was studied. A double mutant C. elegans AU37 strain (glp-4;sek-1) was infected with Candida by ingestion, and the analysis of nematode survival was performed in liquid medium every 24 h until 120 h. Candida establishes a persistent lethal infection in the C. elegans intestinal tract. C. albicans and C. krusei were the most pathogenic species, whereas C. dubliniensis infection showed the lowest mortality. C. albicans was the only species with phospholipase activity, was the greatest producer of aspartyl proteinase and had a higher hemolytic activity. C. albicans and C. krusei caused higher mortality than the rest of the Candida species studied in the C. elegans model of candidiasis.     

Expansion of the Range of the Black Sea Snail <Emphasis Type="Italic">Lithoglyphus naticoides</Emphasis> (C. Pfieffer, 1828) (Mollusca: Gastropoda: Lithoglyphidae) and Associated Trematode Species in the Upper Volga Basin

The Black Sea snail Lithoglyphus naticoides (C. Pfieffer, 1828) (Mollusca: Gastropoda: Lithoglyphidae) was first recorded in the Uglich Reservoir in the summer of 2013. By 2015, several new local settlements of the snail had been found in the Uglich and Rybinsk reservoirs, indicating its successful naturalization in the Upper Volga basin. Parasitological studies of L. naticoides from these habitats reveal the parthenitae of three trematode species.