Identification of genes and proteins induced during the lag and early exponential phase of lager brewing yeasts

AIMS: The aim of the present study is to identify genes and proteins whose expression is induced in lager brewing yeast during the lag phase and early exponential growth. METHODS AND RESULTS: Two-dimensional gel electrophoresis was used to identify proteins induced during the lag and early exponential phase of lager brewing yeast in minimal medium. The identified, early-induced proteins were Ade17p, Eno2p, Ilv5gp, Sam1p, Rps21p and Ssa2p. For most of these proteins, the patterns of induction differed from those of the corresponding genes. However, the genes had similar early expression patterns in minimal medium as observed during lager brewing conditions. The expression of previously identified early-induced genes in Saccharomyces cerevisiae grown in minimal medium, ADO1, ALD6, ASC1, ERG4, GPP1, RPL25, SSB1 and YKL056C, was also early induced in lager yeast under brewing conditions. CONCLUSIONS: The results indicate that the above-mentioned genes in general are induced during the lag phase and early exponential growth in Saccharomyces yeasts. The processes in which these genes take part are likely to play an important role during growth initiation. SIGNIFICANCE AND IMPACT OF THE STUDY: Increased knowledge regarding the early growth phase of lager brewing yeast was obtained. Further, the universality of the identified expression patterns suggests new methodologies for optimization and control of growth initiation during brewing fermentations.     

Gene expression profiling reveals the mechanism and pathophysiology of mouse liver regeneration

Comprehensive analysis of the changes in gene expression during liver regeneration was carried out by using an in-house microarray composed of 2,304 distinct mouse liver cDNA clones. Mice were subjected to partial two-thirds hepatectomy, and changes in mRNA levels were monitored up to 48 h. Of the 2,304 genes analyzed, 496 genes showed expression levels measurable at all time points after the partial hepatectomy. 317 genes were up- or down-regulated 2-fold or more at least at one time point during liver regeneration and were classified into eight clusters based on their expression patterns. With a more stringent cut-off value of +/-2 S.D., 68 genes were listed and were classified into five clusters. In these two analyses with different clustering criteria, functionally categorized genes showed similar cluster distributions. Genes involved in protein synthesis and posttranslational processing were significantly enriched in the cluster characterized by rapid gene activation and subsequent persistence. This suggests the importance of modulating the efficiency of protein supply and/or altering the composition of protein population from the early phase of hepatocyte proliferation. Genes for two major liver functions, i.e. plasma protein secretion and intermediate metabolism were enriched in distinct clusters exhibiting the features of gradual gene activation and sustained repression, respectively. Therefore, these genes are differentially regulated during the regeneration, possibly leading to changes in the flow of amino acids and energy from enzyme proteins to plasma proteins in their synthesis. Thus, clustering analysis of expression patterns of functionally classified genes gave insights into mechanism and pathophysiology of liver regeneration.     

ABA-induced proline accumulation in barley leaf segments: Dependence on protein synthesis

The kinetics of proline accumulation in barley ( Hordeum vulgare L. cv. Georgie) leaf segments showed a lag phase of ca 3 h when the increase was induced by abscisic acid (ABA), but not when the accumulation of the imino acid was promoted by isobutyric acid (IBA). Cycloheximide (CHI) supplied together with ABA, either from the beginning of the treatment or some time before the end of the lag phase, completely abolished ABA-induced proline accumulation, whereas no block was observed when the inhibitor was supplied after the lag phase. Cordycepin (COR) exibited a similar effect. The IBA-induced increase in proline was not influenced by CHI for at least 5 h.
When segments were pretreated with ABA for a period longer than the lag phase in the absence of salts in the external medium, there was no significant increase in proline. If KCI was added to the incubation medium after such a pretreatment, however, proline increased even after removal of the hormone from the external medium. This increase in proline occurred without any lag phase, and was only partially inbibited by CHI and rapidly and totally blocked by fusicoccin (FC). These results suggest that some protein, characterized by a fast turnover and possibly conferring the sensitivity to KCI, is synthesized during the early hours (lag phase) of the ABA treatment.
The synthesis of this protein(s) does not seem to be involved in the increase in proline induced by IBA and is thus a peculiar aspect of that mediated by ABA.