Computer assisted analysis of S-potentials

S-potentials from the channel catfish were analyzed using a high speed biological data processing system developed at this Institute. The analysis has shown that, when moderately dark adapted, the relation between the (maximal) amplitude of S-potential and log intensity of flash was the hyperbolic tangent throughout the whole visible spectrum. This is what one could expect if the S-potential in the fish was generated by signals from a single class of pigment and each signal had discrete action on the S-potential generating mechanism. The maximal absorption of the pigment involved was at around 625 nm.     

Computer assisted karyotype analysis of Pyrrhopappus carolinianus

With the help of Computer Aided Karyotyping procedures, Ag-NOR staining and C-banding techniques, the karyotype of Pyrrhopappus carolinianus (Asteraceae, Lactuceae) has been studied. The species has 2n=12 chromosomes. Silver staining reveals that the two shortest pairs of chromosomes possess NOR's. On the basis of chromosome length and centromere position, only the longest chromosome pair and the satellite chromosomes can be identified. Two types of C-banding can be obtained, dependent on the temperature of the hydrochloric acid hydrolysis of the root tips. Hydrolysis at 60°C results exclusively in centromeric bands, whereas a treatment at room temperature reveals a pattern of intercalary bands. A computer assisted analysis of the intercalary banding pattern resulted in the construction of schematic representation of the average C-banding pattern. This banding pattern allows an easy identification of each of the chromosome pairs.     

Upward shift of alpine plants increases floristic similarity of mountain summits

Question: Does the upward shift of species and accompanied increase in species richness, induced by climate change, lead to homogenization of Alpine summit vegetation? Location: Bernina region of the Swiss Alps. Methods: Based on a data set from previous literature we expand the analysis from species richness to beta‐diversity and spatial heterogeneity. Species compositions of mountain summits are compared using a two‐component heterogeneity concept including the mean and the variance of Sørensen similarities calculated between the summits. Non‐metric multidimensional scaling is applied to explore developments of single summits in detail. Results: Both heterogeneity components (mean dissimilarity and variance) decrease over time, indicating a trend towards more homogeneous vegetation among Alpine summits. However, the development on single summits is not strictly unidirectional. Conclusions: The upward shift of plant species leads to homogenization of alpine summit regions. Thus, increasing alpha‐diversity is accompanied by decreasing beta‐diversity. Beta‐diversity demands higher recognition by scientists as well as nature conservationists as it detects changes which cannot be described using species richness alone.     

Computer assisted microdensitometric analysis of footprinting autoradiographic DATA.

A system comprised of a linear scanning microdensitometer interfaced to a personal computer has been developed to facilitate analysis of ligand-DNA footprinting autoradiograms. The system, which can be used to record density and sequence information from autoradiographic films, enables the user to relate the area under an autoradiographic band to the concentration of radiolabeled molecules present in the electrophoresis gel. This report describes the computer program which performs the calculations and discusses the ability of the system to accurately determine oligonucleotide concentration, as a function of band separation, photographic response, and the computational algorithm used to calculate band areas.     

Computer assisted management of warfarin treatment.

Maintenance of anticoagulation is laborious and costly, and the results are often indifferent. An automatic system which adjusts the dose of warfarin has been designed using a formula devised after a survey of prescribing habits. Programs running on a microcomputer maintain a file of the necessary information and deal with the bulk of the weekly clinic. Dosage is advised, the date of the next visit determined, and the file updated. A doctor uses the console to advise some 10% of patients reserved for special reasons. The system produces clinic and ambulance lists, copies of the advice sent to patients, and, as a protection against machine failure, a weekly copy of the updated file. The results after 16 months are at least as good as those achieved manually. Medical and secretarial time is saved, and statistics about the clinic and its efficacy are made available.     

Computer assisted shared care in hypertension.

A computer assisted shared care scheme for the long term management and follow up of hypertensive patients has been developed in the Grampian Region. The scheme aims at facilitating the exchange of clinically important information between doctors and at achieving target levels of blood pressure with treatment in patients at highest risk of cardiovascular events. The shared care scheme has been well received by the local practitioners. Two hundred and fifty seven patients (18%) of 1426 patients under current long term follow up are assigned to follow up in the hospital aspect of the scheme. At the most recent visit 32% of patients in the hospital aspect and 10% of 1169 patients in the general practice aspect had blood pressure recordings above the target levels of 160/95 mm Hg. The stratification of patients formerly attending hospital clinics into grades of risk has rationalised our follow up procedures to allow the specialist resources to be freed and concentrated on those patients at highest risk and with the most complex problems. This computer assisted patient records system could be applied to other groups of high risk patients in whom long term follow up and surveillance are necessary--for example, patients with diabetes mellitus--and has implications for optimising and monitoring the delivery and outcome of care without overwhelming limited hospital resources.     

Computer assisted quantitative densitometric analysis of 125I-apamin binding sites in the central nervous system

The binding sites for 125I-monoiododerivative of apamin in the central nervous system of rat, guinea-pig, chicken and frog were analysed and compared by computer assisted quantitative densitometric autoradiography on X-ray film. The highest level of binding sites in the rat and guinea-pig brain was found in the limbic-olfactory system and in the substantia gelatinosa of the spinal cord. In the chicken brain apamin binds preferentially to the tectum opticum and nuclei isthmi. In the frog brain no specific apamin binding sites were found. The role of presented topography for apamin binding sites is discussed in relation to neurotoxic properties of apamin.     

A new approach to the species classification problem in floristic analysis

A new method of species (inverse) classification of vegetation data, i.e. classification of species into groups with similar ecological tolerances, is presented which overcomes the problems of species abundance distorting the results. The algorithm TWO-STEP is based on the use of an asymmetric measure of dissimilarity: where i, j are species, h is the stand, n is the total number of stands, and x_ih is the amount of species i in stand h. The algorithm uses the rows of the asymmetric dissimilarity matrix generated as above to form a second symmetric dissimilarity matrix using the measure: where m is the number of species and k the species. Flexible sorting is applied to generate a species classification. Comparison of results after applying the TWO-STEP algorithm and a standard alternative to an artificial data set demonstrates its efficacy. TWO-STEP also shows considerable advantages over previous analyses for a Queensland rainforest data set (quantitative) and an English heath (qualitative) data set. Normalization of species data appears advantageous for quantitative data only.     

基于对齐的生物序列相似性分析

生物序列相似性(或差异性)分析是生物信息学研究的一种重要的方法。其中基于对齐的生物序列相似性分析方法,重点介绍基于隐马尔可夫模型的比较方法,并比较基于对齐的各种生物序列分析方法的优缺点。     

An improved numerical method for the analysis of a floristic pasture survey

A classical ecologist is usually equally interested in groups of sites and groups of species, so that symmetrical numerical models are appropriate for the elucidation of floristic pattern. It is suggested that an agronomist is primarily interested in the pattern of site- (usually paddock-) groups, and is only interested in those species-groups whose members are present in sufficient abundance to be quickly recognizable, and which serve to discriminate clearly between the site-groups. An‘asymmetric inverse’model is defined for the purpose of extracting species-groups of this type, which can be combined with a site classification into a two-way table. The method is applied to a floristic survey carried out at the end of a grazing experiment, and is shown to produce meaningful and profitable results.     

Computer assisted simulations and molecular graphics methods in molecular design

A survey is presented of computer-assisted statistical mechanical methods. The general theoretical background is described and special methods are discussed in detail. Practical procedures allowing for the calculation of binding energies are examined. A recent perturbation-relaxation procedure is summarized.