EVIDENCE THAT THE NUCLEOMORPHS OF CHLORARACHNION REPTANS (CHLORARACHNIOPHYCEAE) ARE VESTIGIAL NUCLEI: MORPHOLOGY,DIVISION AND DNA-DAPI FLUORESCENCE1

Chlorarachnion reptans Geitler shows affinities to both the Chlorophyceae and the chloroplast endoplasmic reticulum-containing chromophyte algae in possessing chlorophyll b and chloroplasts which are limited by four membranes, respectively. In the periplastidal compartment surrounding each of the four to eight chloroplasts of a C. reptans cell are putative eukaryotic-sized ribosomes, scattered tubules and vesicles, and a small double-membrane-limited nucleus-like organelle named the nucleomorph. The nucleomorphs display 4′-6-diamidino-2-phenylindole (DAPI)fluorescence which is sensitive to DNase digestion, but not to treatment with RNase. The nucleomorphs also contain a fibrillogranular body which resembles a nucleolus. Nucleomorph division occurs by the sequential infolding of the inner and outer envelope membranes and subsequent constriction in two, with no involvement of microtubules. In all these characteristics, the nucleomorphs of C. reptans are similar to the cryptomonad nucleomorph which has been hypothesized to be the vestigial nucleus of an ancestral red alga which gave rise to the chloroplasts of the Cryptophyceae. The presence of chlorophyll b and the contents and morphology of C. reptans chloroplast compartments suggest a green algal origin for the chloroplasts of these cells. The discovery of a second organism with a DNA-containing, nucleus-like organelle in its chloroplast compartment lends strong support to the hypothesis that the chloroplasts of many algae have evolved from eukaryotic endosymbionts.     

DNA is present in the nucleomorph of cryptomonads: Further evidence that the chloroplast evolved from a eukaryotic endosymbiont

Summary The nucleomorph is a unique self-replicating organelle which is invariably present in the periplastidal compartment of cryptomonads. The nucleomorph ofCryptomonas abbreviata is located in a groove on the inner face of the pyrenoid. When JB-4-embedded sections ofC. abbreviata are stained with 4-6-diamidino-2-phenylindole (DAPI), the nucleomorph exhibits a blue fluorescence characteristic of DNA-DAPI complexes. This fluorescence is removed by DNase digestion, but not by RNase. When cells are prepared for electron microscopy by the method of Ryter and Kellenberger (Schreil 1964), a network of fine DNA-like fibrils is observed in the nucleomorph matrix. It is estimated that the nucleomorph contains between 10⁸ and 10⁹ daltons of DNA. The presence of DNA in nucleomorphs strongly supports the hypothesis that the nucleomorph is the vestigial nucleus of a eukaryotic endosymbiont. It is postulated that this eukaryotic symbiont was an ancestral red alga or an organism closely related to red algae. The cryptomonad host cell, on the other hand, is not evolutionarily close to any other group of algae.     

Isolation and preliminary characterization of the nucleus and the nucleomorph of a cryptomonad, Pyrenomonas salina

The cryptomonad cell has presumably arisen by a secondary symbiotic event involving two eukaryotes, and thus is composed of four different DNA-containing compartments (nucleus, nucleomorph, plastid, and mitochondrion). In the present paper, the isolation and quantitative DNA estimation of the host cell nucleus and the nucleomorph, a vestigial eukaryotic nucleus, is presented. In the presence of CaCl2, the host nucleus could be isolated from cells lysed by Triton X-100. For isolation of the nucleomorph, cells were slightly fixed with glutardialdehyde and thereafter, lysed by treatment with proteinase K and Triton X-100, leaving an intact nucleomorph-pyrenoid complex. Nuclei were further purified by isopycnic Percoll density gradient centrifugation. Purity and quality of the two nuclear fractions were checked by means of DAPI-epifluorescence microscopy and electron microscopy. The DNA content of the host nucleus and nucleomorph, determined by the diphenylamine method and by means of quantitative microspectrofluorometry, respectively, was found to be more than 700 times higher in the host nucleus than in the nucleomorph.     

The chlorarachniophyte nucleomorph is supplemented with host cell nucleus-encoded histones

In chlorarachniophytes, algae originating from secondary endosymbiosis, the complex plastids retained a nucleomorph, the vestigial nucleus of the green algal endosymbiont. The nucleomorph of Bigelowiella natans encodes several plastid-targeted proteins and hundreds of housekeeping proteins. However, many fundamental genes for the maintainance of this subcompartment are missing. In this issue of Molecular Microbiology, Hirakawa et al. (2011) demonstrate nuclear histone genes of dual evolutionary origin in B. natans and convincingly show the targeting of the corresponding proteins to nucleus and nucleomorph respectively. One of the ways through which the nuclear genome exerts control upon its endosymbiotic junior partner is revealed. Insights into the nature of bipartite targeting sequences directing the respective proteins into the periplastidal space (where the nucleomorph resides) are gained. Further, cell cycle-dependent, differential regulation is shown for both nuclear and nucleomorph histone genes.     

Cytochemical and ultrastructural studies of ribonucleoprotein containing structures in oocytes of Acheta domesticus

Summary Two distinct types of ribonucleoprotein containing structures are found in oocytes of the house cricket, Acheta domesticus, a large secondary or accessory nucleolus and many small primary nucleoli. The secondary nucleolus increases in size during oocyte development and is similar in appearance to the nucleolus of somatic cells. The primary nucleoli are intimately associated with a large, extrachromosomal DNA containing body. The DNA body is no longer visible in nuclei of late diplotene stage cells when the primary nucleoli are dispersed within the nucleoplasm. Both types of nucleoli contain cytochemically detectable RNA and acid protein, little or no DNA and basic protein, and particulate structures similar to but smaller than cytoplasmic ribosomes.The authors acknowledge the technical assistance of Miss Celeste Malinoski and Mrs. Marcia Andrews. This work was supported by a U.S.P.H.S. grant, number GM-16440-01 and grants number L-16 and J-1 from the Health Research Services Foundation.     

The smallest known eukaryotic genomes encode a protein gene: towards an understanding of nucleomorph functions

Cryptomonads are unicellular algae with plastids surrounded by four membranes. Between the two pairs of membranes lies a periplastidal compartment that harbours a DNA-containing organelle, termed the nucleomorph. The nucleomorph is the vestigial nucleus of a phototrophic, eukaryotic endosymbiont. Subcloning of parts of one nucleomorph chromosome revealed a gene coding for an Hsp70 protein. We demonstrate the expression of this nucleomorph protein-coding gene and present a model for protein transport from the host to the endosymbiont compartment.This paper is dedicated to Prof. Dr. Peter Sitte on the occasion of his 65^th birthday     

Ancient Gene Duplication and Differential Gene Flow in Plastid Lineages: The GroEL/Cpn60 Example

Cryptomonads, small biflagellate algae, contain four different genomes. In addition to the nucleus, mitochondrion, and chloroplast is a fourth DNA-containing organelle the nucleomorph. Nucleomorphs result from the successive reduction of the nucleus of an engulfed phototrophic eukaryotic endosymbiont by a secondary eukaryotic host cell. By sequencing the chloroplast genome and the nucleomorph chromosomes, we identified a groEL homologue in the genome of the chloroplast and a related cpn60 in one of the nucleomorph chromosomes. The nucleomorph-encoded Cpn60 and the chloroplast-encoded GroEL correspond in each case to one of the two divergent GroEL homologues in the cyanobacterium Synechocystis sp. PCC6803. The coexistence of divergent groEL/cpn60 genes in different genomes in one cell offers insights into gene transfer from evolving chloroplasts to cell nuclei and convergent gene evolution in chlorophyll a/b versus chlorophyll a/c/phycobilin eukaryotic lineages. Received: 24 April 1998 / Accepted: 12 June 1998     

The cryptomonad nucleomorph

The cryptomonad nucleomorph is a vestigial nucleus of a eukaryotic red alga engulfed by a phagotrophic protist and retained as a photosynthetic endosymbiont. This review recounts the initial discovery and subsequent characterisation of the cryptomonad nucleomorph focusing on the key role of Peter Sitte and his protégés in our understanding of secondary endosymbiosis to create complex plastids, one of the major transition events in the evolution of life on Earth.     

Primary and secondary structure of the nuclear small subunit ribosomal RNA of the cryptomonadPyrenomonas salina as inferred from the gene sequence: Evolutionary implications

Summary The cryptomonadPyrenomonas salina presumably has arisen from a symbiotic event involving a flagellated phagotrophic host cell and a photosynthetic eukaryote as the symbiont. Correspondingly, in this unicellular alga there are four different genomes, e.g., the nuclear and the mitochondrial genomes of the host cell as well as the plastid genome and the genome contained in the vestigial nucleus of the endocytobiont (nucleomorph). To analyze the orgin of one of the symbiotic partners the small subunit rRNA gene sequence of the host cell nucleus was determined, and a secondary structure model has been constructed. This sequence is compared to those of 40 other eukaryotes. A phylogenetic tree constructed using the neighborliness method revealed a close relationship between the host cell ofP. salina and the chlorophytes, whereas the rhodophytes diverge more deeply in the tree.     

Molecular, morphological and phylogenetic characterization of six chlorarachniophyte strains

We compare and contrast the morphological and molecular features of six chlorarachniophyte strains, and examine their evolutionary origins. Electron microscopical studies of nucleomorphs and chloroplasts, characterization of nucleomorph karyotypes, and phylogenetic analyses of small subunit ribosomal RNA (srRNA) genes derived from the nucleomorph and host cell genomes have been used to separate the six strains into three distinct groups. One group, dubbed the‘beast group’, contains the strains Chlorarachnion sp. 242, Chlor-arachnion sp. 621, Chlorarachnion sp. 1408 and Chlorarachnion sp. 1481. Members of the beast group have a novel flagellate form and are apparently picoplank-tonic. The other two groups currently contain only one species each: Chlorarachnion reptans and Lotharella sp. 240. All chlorarachniophyte nucleomorphs examined house three small linear chromosomes each furnished with telomeres and srRNA genes.     

The cryptomonad histone H4-encoding gene: structure and chromosomal localization

Cryptomonads are unicellular flagellates whose plastids are surrounded by four membranes. A periplastidal compartment, containing eukaryote-type ribosomes, starch grains and a so-called nucleomorph, is located between the inner and outer membrane pairs. The nucleomorph has been shown to be the vestigial nucleus of a eukaryotic endosymbiont. In order to obtain more information about the chromatin structure of the nucleomorph and the host nuclear chromosomes, we studied the distribution of the histone, H4. H4 was not detectable in the nucleomorph by immunolocalization, thus supporting earlier findings by Gibbs [In: Wiesner et al. (Eds.), Experimental Phycology 1, 1990, pp. 145–157]. Likewise, no H4 DNA was demonstrable in the nucleomorph by Southern hybridization. Sequence analysis, and Southern and Northern blot data of a cryptomonad gene, H4, indicate an intermediate position for these genes between animals and plants.     

NUCLEOMORPH KARYOTYPE DIVERSITY IN THE FRESHWATER CRYPTOPHYTE GENUS CRYPTOMONAS1

Cryptophytes are unicellular, biflagellate algae with plastids (chloroplasts) derived from the uptake of a red algal endosymbiont. These organisms are unusual in that the nucleus of the engulfed red alga persists in a highly reduced form called a nucleomorph. Nucleomorph genomes are remarkable in their small size (<1,000 kilobase pairs [kbp]) and high degree of compaction (～1 kbp per gene). Here, we investigated the molecular and karyotypic diversity of nucleomorph genomes in members of the genus Cryptomonas. 18S rDNA genes were amplified, sequenced, and analyzed from C. tetrapyrenoidosa Skuja CCAP979/63, C. erosa Ehrenb. emmend. Hoef‐Emden CCAP979/67, Cryptomonas sp. CCAP979/52, C. lundii Hoef‐Emden et Melkonian CCAP979/69, and C. lucens Skuja CCAP979/35 in the context of a large set of publicly available nucleomorph 18S rDNA sequences. Pulsed‐field gel electrophoresis (PFGE) was used to examine the nucleomorph genome karyotype of each of these strains. Individual chromosomes ranged from ～160 to 280 kbp in size, with total genome sizes estimated to be ～600–655 kbp. Unexpectedly, the nucleomorph karyotype of Cryptomonas sp. CCAP979/52 is significantly different from that of C. tetrapyrenoidosa and C. lucens, despite the fact that their 18S rDNA genes are >99% identical to one another. These results suggest that nucleomorph karyotype similarity is not a reliable indicator of evolutionary affinity and provides a starting point for further investigation of the fine‐scale dynamics of nucleomorph genome evolution within members of the genus Cryptomonas.     

3H-URIDINE INCORPORATION IN THE PREMITOTIC STAGE OF RHIZOID CELL DIFFERENTIATION IN PTERIS VITTATA L.

The premitotic rhizoid stage (corona stage) of P. vittata gametophytes was pulsed in radioactive uridine for 5, 15, or 30 min and the data analyzed quantitatively by autoradiography. After 5 min, only the nucleoplasmic compartment is labelled significantly, suggesting that this short pulse is insufficient time for labelled precursor to be fixed in the nucleolus or to be transported from the nucleus to the cytoplasm. Since after 15 and 30 min, all compartments are labelled, with the greatest proportional increase over the nucleolus, it is concluded that cytoplasmic labelling is nuclear in origin and that nucleolar RNA activity is relatively high in this stage.     

On the presence and character of the nucleolus in the spermatid and fecundant spermatozoons of heteropachyloidellus robustus roew

Summary The presence of the nucleolus and the nucleolonema in the spermatozoons of a specie of arachnides (Heteropachyloidellus robustus Roew.) is shown in this paper. This fact confirms the thesis supported in a previous work that the nucleolonema is a permanent cell structure.During the maturative process of the spermatid the nucleolus does not disappear, and only its morphology changes. After proving that the intranuclear body found in the spermatozoon is really the nucleolus, and after showing that this body is present in the fecundative spermatozoons removed from the female spermathecae, it is concluded that the nucleolus is carried to the egg together with the chromosomic material.     

A eukaryotic genome of 660 kb: electrophoretic karyotype of nucleomorph and cell nucleus of the cryptomonad alga, Pyrenomonas salina.

Cryptomonads are unicellular algae with chloroplasts surrounded by four membranes. Between the inner and the outer pairs of membranes is a narrow plasmatic compartment which contains a nucleus-like organelle called the nucleomorph. Using pulsed field gel electrophoresis it is shown that the nucleomorph of the cryptomonad Pyrenomonas salina contains three linear chromosomes of 195 kb, 225 kb and 240 kb all of which encode rRNAs. Thus, this vestigial nucleus has a haploid genome size of 660 kb, harboring the smallest eukaryotic genome known so far. From the cell nucleus of P. salina at least 20 chromosomes ranging from 230 kb to 3.000 kb were fractionated. Here, the rDNA was detected on a single chromosome of about 2.500 kb.     

Replication of autosomal heterochromatin in man

Summary In interphase nuclei of leukocytes and oral mucosa cells of normal human males and f males, two types of heterochromatin can he distinguished according to their location in the nucleus. Firstly, nucleolus-associated heterochromatin which consists of one large mass of autosomal segments surrounding the nucleolus, or several large masses if there appears to be more than one nucleolus in the same nucleus. Secondly, scattered heterochromatin composed of a large number of positively heteropycnotic bodies scattered throughout the nucleus and not directly associated with the nucleolus. The correspondence of this type of heterochromatin with chromosome segments is obtained at late prophase where several positively heteropycnotic regions belonging to the autosomes are found scattered throughout the nucleus.In human females sex-chromatin is present in addition to these two types. In leukocytes the sex-chromatin cannot be easily identified due to the large size and number of the scattered heterochromatic bodies, but in oral mucosa cells such a distinction is more easily achieved due to the smaller amount of autosomal heterochromatin.Nucleolus-associated and scattered heterochromatin from leukocytes of both sexes synthesized their DNA at a different period of time from the euchromatin. The asynchrony of replication observed in the heterochromatin at interphase is in agreement with the asynchrony between autosomes and within autosomes described by many authors at metaphase. This does not mean, however, that every segment or chromosome found replicating asynchronously at metaphase contains necessarily heterochromatin.Dedicated to Professor H. Bauer on the occasion of his 60th birthday. — This investigation was supported by a research grant to A. Lima-de-Faria from the Swedish Natural Science Research Council.     

Gymnodinium aeruginosum (Dinophyta): A blue-green dinoflagellate with a vestigial,anucleate, cryptophycean endosymbiont

Gymnodinium aeruginosum has the usual fine structure of a dinoflagellate but does not seem to contain a well elaborated peduncle or a microtubular basket. Naked cells are surrounded by a single large amphiesmal vesicle. It houses an endosymbiont with typical blue-green cryptophycean chloroplasts (generally only one), cryptophycean starch grains in the periplastidal cytoplasm without a nucleomorph, and two membranes separating the periplastidal cytoplasm from the cryptophycean cytoplasm which contains mitochondria, ER, vesicles and ribosomes, but no eukaryotic nucleus. The endosymbiont is surrounded by a single membrane. Possible ways of the acquisition of the endosymbiont and the problem of the existence of ribosomes within a compartment without nucleus are discussed.Devoted to Prof. Dr.L. Geitler, the Nestor of phycology and endosymbiosis research, on the occasion of the 90th anniversary of his birthday.     

RNA is required for the integrity of multiple nuclear and cytoplasmic membrane‐less RNP granules

Numerous membrane‐less organelles, composed of a combination of RNA and proteins, are observed in the nucleus and cytoplasm of eukaryotic cells. These RNP granules include stress granules (SGs), processing bodies (PBs), Cajal bodies, and nuclear speckles. An unresolved question is how frequently RNA molecules are required for the integrity of RNP granules in either the nucleus or cytosol. To address this issue, we degraded intracellular RNA in either the cytosol or the nucleus by the activation of RNase L and examined the impact of RNA loss on several RNP granules. We find the majority of RNP granules, including SGs, Cajal bodies, nuclear speckles, and the nucleolus, are altered by the degradation of their RNA components. In contrast, PBs and super‐enhancer complexes were largely not affected by RNA degradation in their respective compartments. RNA degradation overall led to the apparent dissolution of some membrane‐less organelles, whereas others reorganized into structures with altered morphology. These findings highlight a critical and widespread role of RNA in the organization of several RNP granules.