Coral Reef Fish Assessment in the ‘Coral Triangle’ of Southeastern Asia

Icthyological results of four rapid assessment surveys are presented. The surveys were completed between 1997–1999 and were conducted at the following localities: Milne Bay (Papua New Guinea), Calamianes Islands (Palawan, Philippines), Togean–Banggai Islands (Sulawesi, Indonesia), and Weh Island (Sumatra, Indonesia). Surveys were conducted over periods ranging from 9 to 22 days and consisted mainly of underwater observations while scuba diving, supplemented with small rotenone and spear gun collections. Milne Bay was characterized by a high percentage of pristine reef environments and supported the largest number of species (1040). Diversity was generally lower at the Philippine and Indonesian sites due to more habitat homogeneity and higher fishing pressure, including the widespread use of illegal fishing methods, including cyanide and explosives.     

How Quickly do Fragments of Coral “Self‐Attach” after Transplantation?

Transplantation of coral fragments is seen as a potential method to rapidly restore coral cover to areas of degraded reef; however, considerable research is still needed to assess the effectiveness of coral transplantation as a viable reef restoration tool. Initially, during restoration efforts, coral transplants are attached artificially. Self‐attachment (i.e., growth of coral tissue onto the substrate) provides a more secure and lasting bond, thus knowledge about self‐attachment times for corals is of importance to reef restoration. While it is known that coral fragments may generate new tissue and bond to substrata within a few weeks of transplantation, surprisingly little is known about the speed of self‐attachment for most species. Two independent experiments were carried out to examine the self‐attachment times of 12 scleractinian and one non‐scleractinian coral species to a natural calcium carbonate substrate. The first experiment examined times to self‐attachment in 11 species of differing morphologies from seven families over approximately 7 months, whereas the second experiment examined three fast‐attaching Acropora species over approximately 1 month. In the first experiment, the branching species Acropora muricata had a significantly faster self‐attachment time compared to all other species, while Echinopora lamellosa had the slowest self‐attachment time. For the second experiment, A. muricata was significantly slower to self‐attach than Acropora hyacinthus (tabular) and Acropora digitifera (corymbose‐digitate). The results suggest that a combination of factors including growth rates, growth form and life history may determine how quickly fragments of coral species self‐attach after fragmentation and transplantation.     

Coral diseases: what is really known?

Reports of new and emerging coral diseases have proliferated in recent years. Such coral diseases are often cited as contributing to coral reef decline. Many of these diseases, however, have been described solely on the basis of field characteristics, and in some instances there is disagreement as to whether an observed coral condition is actually a disease. A disease pathogen has been identified for only three coral diseases, and for only two of these has the pathogen been shown (in the laboratory) to be the disease agent. In one case, the same disease name has been used for several widely varying coral syndromes, whereas in another multiple disease names have been applied to symptoms that may be caused by a single disease. Despite the current confusion, rapid progress is being made.     

Regional Endothermy in a Coral Reef Fish?

Although a few pelagic species exhibit regional endothermy, most fish are regarded as ectotherms. However, we document significant regional endothermy in a benthic reef fish. Individual steephead parrotfish, Chlorurus microrhinos (Labridae, formerly Scaridae) were tagged and their internal temperatures were monitored for a 24 h period using active acoustic telemetry. At night, on the reef, C. microrhinos were found to maintain a consistent average peritoneal cavity temperature 0.16 ± 0.005 °C (SE) warmer than ambient. Diurnal internal temperatures were highly variable for individuals monitored on the reef, while in tank-based trials, peritoneal cavity temperatures tracked environmental temperatures. The mechanisms responsible for a departure of the peritoneal cavity temperature from environmental temperature occurred in C. microrhinos are not yet understood. However, the diet and behavior of the species suggests that heat in the peritoneal cavity may result primarily from endogenous thermogenesis coupled with physiological heat retention mechanisms. The presence of limited endothermy in C. microrhinos indicates that a degree of uncertainty may exist in the manner that reef fish respond to their thermal environment. At the very least, they do not always appear to respond to environmental temperatures as neutral thermal vessels and do display limited, but significant, visceral warming.     

Out of Their Depth? Isolated Deep Populations of the Cosmopolitan Coral Desmophyllum dianthus May Be Highly Vulnerable to Environmental Change

Deep sea scleractinian corals will be particularly vulnerable to the effects of climate change, facing loss of up to 70% of their habitat as the Aragonite Saturation Horizon (below which corals are unable to form calcium carbonate skeletons) rises. Persistence of deep sea scleractinian corals will therefore rely on the ability of larvae to disperse to, and colonise, suitable shallow-water habitat. We used DNA sequence data of the internal transcribed spacer (ITS), the mitochondrial ribosomal subunit (16S) and mitochondrial control region (MtC) to determine levels of gene flow both within and among populations of the deep sea coral Desmophyllum dianthus in SE Australia, New Zealand and Chile to assess the ability of corals to disperse into different regions and habitats. We found significant genetic subdivision among the three widely separated geographic regions consistent with isolation and limited contemporary gene flow. Furthermore, corals from different depth strata (shallow <600 m, mid 1000-1500 m, deep >1500 m) even on the same or nearby seamounts were strongly differentiated, indicating limited vertical larval dispersal. Genetic differentiation with depth is consistent with the stratification of the Subantarctic Mode Water, Antarctic Intermediate Water, the Circumpolar Deep and North Pacific Deep Waters in the Southern Ocean, and we propose that coral larvae will be retained within, and rarely migrate among, these water masses. The apparent absence of vertical larval dispersal suggests deep populations of D. dianthus are unlikely to colonise shallow water as the aragonite saturation horizon rises and deep waters become uninhabitable. Similarly, assumptions that deep populations will act as refuges for shallow populations that are impacted by activities such as fishing or mining are also unlikely to hold true. Clearly future environmental management strategies must consider both regional and depth-related isolation of deep-sea coral populations.     

Predicting Coral Recruitment in Palau’s Complex Reef Archipelago

Reproduction and recruitment are key processes that replenish marine populations. Here we use the Palau archipelago, in the western Pacific Ocean, as a case study to examine scales of connectivity and to determine whether an oceanographic model, incorporating the complex reef architecture, is a useful predictor of coral recruitment. We tested the hypothesis that the reefs with the highest retention also had the highest densities of juvenile coral density from 80 field sites. Field comparisons showed a significant correlation between the densities of juvenile Acropora colonies and total larval recruitment derived from the model (i.e., calculated as the sum of the densities of larvae that self-seeded and recruited from the other reefs in the archipelago). Long-distance larval imports may be too infrequent to sustain coral populations, but are critical for recovery in times of extreme local stress.     

Coral skeletal carbon isotopes (δ<Superscript>13</Superscript>C and Δ<Superscript>14</Superscript>C) record the delivery of terrestrial carbon to the coastal waters of Puerto Rico

Tropical small mountainous rivers deliver a poorly quantified, but potentially significant, amount of carbon to the world’s oceans. However, few historical records of land–ocean carbon transfer exist for any region on Earth. Corals have the potential to provide such records, because they draw on dissolved inorganic carbon (DIC) for calcification. In temperate systems, the stable- (δ¹³C) and radiocarbon (Δ¹⁴C) isotopes of coastal DIC are influenced by the δ¹³C and Δ¹⁴C of the DIC transported from adjacent rivers. A similar pattern should exist in tropical coastal DIC and hence coral skeletons. Here, δ¹³C and Δ¹⁴C measurements were made in a 56-year-old Montastraea faveolata coral growing ~1 km from the mouth of the Rio Fajardo in eastern Puerto Rico. Additionally, the δ¹³C and Δ¹⁴C values of the DIC of the Rio Fajardo and its adjacent coastal waters were measured during two wet and dry seasons. Three major findings were observed: (1) synchronous depletions of both δ¹³C and Δ¹⁴C in the coral skeleton are annually coherent with the timing of peak river discharge, (2) riverine DIC was always more depleted in δ¹³C and Δ¹⁴C than seawater DIC, and (3) the correlation of δ¹³C and Δ¹⁴C was the same in both coral skeleton and the DIC of the river and coastal waters. These results indicate that coral skeletal δ¹³C and Δ¹⁴C are recording the delivery of riverine DIC to the coastal ocean. Thus, coral records could be used to develop proxies of historical land–ocean carbon flux for many tropical regions. Such information could be invaluable for understanding the role of tropical land–ocean carbon flux in the context of land-use change and global climate change.     

Establishment of Coral–Algal Symbiosis Requires Attraction and Selection

Coral reef ecosystems are based on coral–zooxanthellae symbiosis. During the initiation of symbiosis, majority of corals acquire their own zooxanthellae (specifically from the dinoflagellate genus Symbiodinium) from surrounding environments. The mechanisms underlying the initial establishment of symbiosis have attracted much interest, and numerous field and laboratory experiments have been conducted to elucidate this establishment. However, it is still unclear whether the host corals selectively or randomly acquire their symbionts from surrounding environments. To address this issue, we initially compared genetic compositions of Symbiodinium within naturally settled about 2-week-old Acropora coral juveniles (recruits) and those in the adjacent seawater as the potential symbiont source. We then performed infection tests using several types of Symbiodinium culture strains and apo-symbiotic (does not have Symbiodinium cells yet) Acropora coral larvae. Our field observations indicated apparent preference toward specific Symbiodinium genotypes (A1 and D1-4) within the recruits, despite a rich abundance of other Symbiodinium in the environmental population pool. Laboratory experiments were in accordance with this field observation: Symbiodinium strains of type A1 and D1-4 showed higher infection rates for Acropora larvae than other genotype strains, even when supplied at lower cell densities. Subsequent attraction tests revealed that three Symbiodinium strains were attracted toward Acropora larvae, and within them, only A1 and D1-4 strains were acquired by the larvae. Another three strains did not intrinsically approach to the larvae. These findings suggest the initial establishment of corals–Symbiodinium symbiosis is not random, and the infection mechanism appeared to comprise two steps: initial attraction step and subsequent selective uptake by the coral.     

Comparing Deep-Sea Fish Fauna between Coral and Non-Coral “Megahabitats” in the Santa Maria di Leuca Cold-Water Coral Province (Mediterranean Sea)

Two experimental longline surveys were carried out in the Santa Maria di Leuca (SML) cold-water coral province (Mediterranean Sea) during May–June and September–October 2010 to investigate the effect of corals on fish assemblages. Two types of “megahabitat” characterized by the virtual absence of fishing were explored. One was characterized by complex topography including mesohabitats with carbonate mounds and corals. The other type of megahabitat, although characterized by complex topographic features, lacks carbonate mounds and corals. The fishing vessel was equipped with a 3,000 m monofilament longline with 500 hooks and snoods of 2.5 m in length. A total of 9 hauls, using about 4,500 hooks, were carried out both in the coral megahabitat and in the non-coral megahabitat during each survey. The fish Leucoraja fullonica and Pteroplatytrygon violacea represent new records for the SML coral province. The coral by-catch was only obtained in the coral megahabitat in about 55% of the stations investigated in both surveys. The total catches and the abundance indices of several species were comparable between the two habitat typologies. The species contributing most to the dissimilarity between the two megahabitat fish assemblages were Pagellus bogaraveo, Galeus melastomus, Etmopterus spinax and Helicolenus dactylopterus for density and P. bogaraveo, Conger conger, Polyprion americanus and G. melastomus for biomass. P. bogaraveo was exclusively collected in the coral megahabitat, whereas C. conger, H. dactylopterus and P. americanus were found with greater abundance in the coral than in the non-coral megahabitat. Differences in the sizes between the two megahabitats were detected in E. spinax, G. melastomus, C. conger and H. dactylopterus. Although these differences most probably related to the presence-absence of corals, both megahabitats investigated play the role of attraction-refuge for deep-sea fish fauna, confirming the important role of the whole SML coral province as a refuge area from fishing.     

Apparent Involvement of a β1 Type Integrin in Coral Fertilization

Integrins are involved in a wide variety of cell adhesion processes, and have roles in gamete binding and fusion in mammals. Integrins have been also discovered in the scleractinian coral Acropora millepora (Cnidaria: Anthozoa). As a first step toward understanding the molecular basis of fertilization in corals, we examined the effect of polyclonal antisera raised against recombinant coral integrins on gamete interactions in A. millepora. Antiserum raised against integrin βcn1 dramatically decreased the binding of Acropora sperm to eggs and significantly decreased fertilization rates relative to preimmune serum and seawater controls. However, the antiserum against AmIntegrin α1 did not affect significantly either sperm–egg binding or fertilization. One possible explanation for this is that AmIntegrin α1 may preferentially mediate interactions with RGD-containing ligands, whereas mammalian α6 integrin (which is most directly implicated in gamete interactions) preferentially interacts with laminin-related ligands. Our results suggest that β1 type integrins are involved in the fertilization process in Acropora and that some functions of these molecules may have been conserved between corals and mammals. A. Iguchi and L. M. Márquez contributed equally to this work.     

The Diversity of Coral Reefs: What Are We Missing?

Tropical reefs shelter one quarter to one third of all marine species but one third of the coral species that construct reefs are now at risk of extinction. Because traditional methods for assessing reef diversity are extremely time consuming, taxonomic expertise for many groups is lacking, and marine organisms are thought to be less vulnerable to extinction, most discussions of reef conservation focus on maintenance of ecosystem services rather than biodiversity loss. In this study involving the three major oceans with reef growth, we provide new biodiversity estimates based on quantitative sampling and DNA barcoding. We focus on crustaceans, which are the second most diverse group of marine metazoans. We show exceptionally high numbers of crustacean species associated with coral reefs relative to sampling effort (525 species from a combined, globally distributed sample area of 6.3 m(2)). The high prevalence of rare species (38% encountered only once), the low level of spatial overlap (81% found in only one locality) and the biogeographic patterns of diversity detected (Indo-West Pacific>Central Pacific>Caribbean) are consistent with results from traditional survey methods, making this approach a reliable and efficient method for assessing and monitoring biodiversity. The finding of such large numbers of species in a small total area suggests that coral reef diversity is seriously under-detected using traditional survey methods, and by implication, underestimated.     

Coral Disease Diagnostics: What's between a Plague and a Band?

Recently, reports of coral disease have increased significantly across the world's tropical oceans. Despite increasing efforts to understand the changing incidence of coral disease, very few primary pathogens have been identified, and most studies remain dependent on the external appearance of corals for diagnosis. Given this situation, our current understanding of coral disease and the progression and underlying causes thereof is very limited. In the present study, we use structural and microbial studies to differentiate different forms of black band disease: atypical black band disease and typical black band disease. Atypical black band diseased corals were infected with the black band disease microbial consortium yet did not show any of the typical external signs of black band disease based on macroscopic observations. In previous studies, these examples, here referred to as atypical black band disease, would have not been correctly diagnosed. We also differentiate white syndrome from white diseases on the basis of tissue structure and the presence/absence of microbial associates. White diseases are those with dense bacterial communities associated with lesions of symbiont loss and/or extensive necrosis of tissues, while white syndromes are characteristically bacterium free, with evidence for extensive programmed cell death/apoptosis associated with the lesion and the adjacent tissues. The pathology of coral disease as a whole requires further investigation. This study emphasizes the importance of going beyond the external macroscopic signs of coral disease for accurate disease diagnosis.     

Biodiversity of Coral Reefs: What are We Losing and Why?

SYNOPSIS. Coral reefs are threatened by numerous anthropogenicimpacts, some of which have already had major effects worldwide.These unique tropical environments harbor a high diversity ofcorals, reef invertebrates, fish and other animals and plants.In most taxa, the species diversity of reef-associated organismsis poorly understood because many of the species have yet tobe collected and described. High coral mortality has been associatedwith natural events such as hurricanes, predator outbreaks andperiods of high temperature, but has also resulted from excessnutrients in sewage and from specific pollutants. Reef coralsand associated organisms are also threatened by the possibilityof global warming which will result in rising sea levels andperiods of increased temperature stress, and which may alsobring increased storm frequency and intensity. Although therecent extensive episodes of coral bleaching in the Caribbeanand eastern Pacific cannot be causally related to global warmingat this time, the close link between bleaching and temperaturesuggests that global warming will result in severe changes incoral assemblages. Major reef destruction has followed outbreaksof the predatory seastar Acanthaster planci in the Pacific.Although this is considered part of a natural disturbance cycle,there are indications that altered land use patterns and reductionof predators on this seastar by human activities may have increasedthe severity of outbreaks. Recreational and commercial use ofreefs has also increased, and has caused extensive damage, especiallynear areas of high population density. One of the most obviousand widespread losses to reef biota is the reduction in fishpopulations from intense overfishing in most reef areas of theworld. Coasts without adequately managed reefs have sufferedintense overfishing for both local and export purposes, to thepoint where the positive effects of fish on those reefs havebeen compromised. The combination of these destructive factorshas altered reefs in all localities, and many that were onceconsidered protected by distance and low population densityare now being exploited as well. On the positive side, improvedunderstanding of ecological processes on reefs combined withconcerted conservation efforts have managed to protect someextensive areas of reef for the future.     

High Complexity Food Webs in Low-diversity Eastern Pacific Reef–Coral Communities

Community-wide feeding interrelationships in a low-diversity coral reef off the Pacific coast of Panamá (Uva Island reef) demonstrate complex pathways involving herbivore, strong corallivore, and carnivore interactions. Four trophic levels with 31 interguild links are identified in a generalized food web, and documented feeding interrelationships with 287+ species links are portrayed in a coral–corallivore subweb. The importance of trophic groups changes greatly with time, from unknown causes over annual to decadal-scale periods, and during very strong El Niño–Southern Oscillation events such that intermittent intense herbivory by echinoids (Diadema) and corallivory by gastropod mollusks, the crown-of-thorns sea star Acanthaster, hermit crabs, and fishes result in high levels of coral mortality and bioerosion of reef substratum. Intraregional differences in species composition and abundances affecting food-web interactions are briefly described for nonupwelling (Uva Island) and upwelling areas (Pearl Islands) in Panamá. Seasonal upwelling in the Pearl Islands results in high plankton productivity, which likely augments production in invertebrates, fishes, marine mammals, and seabirds, but these pathways still remain largely unquantified. The corallivore Acanthaster is absent from upwelling centers in Panamá and from upwelling and nonupwelling areas in the southern and central Galápagos Islands, and the highly destructive, facultative corallivore Eucidaris galapagensis occurs only in the latter offshore islands and at Cocos Island. Relatively recent declines in the abundances of manta rays, sharks, and spiny lobsters are correlated with, but not necessarily causally linked to, increasing fishing activities in the late 1970s to early 1980s. The extent to which the complex yet highly unstable Uva Island food web is representative of other eastern Pacific coral reef ecosystems remains to be investigated.     

Coral disease diagnostics: what's between a plague and a band?

Recently, reports of coral disease have increased significantly across the world's tropical oceans. Despite increasing efforts to understand the changing incidence of coral disease, very few primary pathogens have been identified, and most studies remain dependent on the external appearance of corals for diagnosis. Given this situation, our current understanding of coral disease and the progression and underlying causes thereof is very limited. In the present study, we use structural and microbial studies to differentiate different forms of black band disease: atypical black band disease and typical black band disease. Atypical black band diseased corals were infected with the black band disease microbial consortium yet did not show any of the typical external signs of black band disease based on macroscopic observations. In previous studies, these examples, here referred to as atypical black band disease, would have not been correctly diagnosed. We also differentiate white syndrome from white diseases on the basis of tissue structure and the presence/absence of microbial associates. White diseases are those with dense bacterial communities associated with lesions of symbiont loss and/or extensive necrosis of tissues, while white syndromes are characteristically bacterium free, with evidence for extensive programmed cell death/apoptosis associated with the lesion and the adjacent tissues. The pathology of coral disease as a whole requires further investigation. This study emphasizes the importance of going beyond the external macroscopic signs of coral disease for accurate disease diagnosis.     

Coral frameworks revisited–reefs and coral carpets in the northern Red Sea

 Coral communities were investigated in the northern Red Sea, in the Gulfs of Suez and Aqaba, for their framework building potential. Five types of coral frameworks were differentiated: Acropora reef framework, Porites reef framework, Porites carpet, faviid carpet, and Stylophora carpet. Two non-framework community types were found: the Stylophora-Acropora community, and soft coral communities. Reef frameworks show a clear ecological zonation along depth and hydrodynamic exposure gradients, with clear indicator communities for each zone. By definition, coral carpets build a framework but lack distinct zonation patterns since they grow only in areas without pronounced gradients. In the northern Red Sea they show a gradual change with depth from Porites to faviid dominance. A Stylophora carpet is restricted to shallow water in the northern Gulf of Suez. Although growth rates of carpets may be somewhat less than those of reefs, the carbonate accumulation is considered to be higher in carpet areas due to their significantly higher areal extension. In addition, reefs and carpets have different sediment retention characteristics – the carpet retains, the reef exports. The in situ fossilization potential of coral carpets is expected to be higher than that of reef frameworks. Accepted: 25 May 1999     

Coral settlement onto Halimeda opuntia: a fatal attraction to an ephemeral substrate?

Degraded reefs with a high abundance of macroalgae usually also have low densities of coral recruits. Few studies, however, have examined whether these algae affect coral larval settlement. This study demonstrates, experimentally, that larvae of the Caribbean coral Favia fragrum can settle on the green alga Halimeda opuntia even when another substrate more suitable for settlement is present. Larval settlement onto experimental substrates was quantified under three treatments: rubble only, rubble plus plastic algal mimic, and rubble plus live H. opuntia. Similar total larval settlement was observed in all treatments. No larvae settled on the algal mimic, but total settlement was similar on the rubble in the first two treatments, showing that the rubble alone offered sufficient substrate for high settlement success. About half the larvae in the live algal treatment settled on H. opuntia instead of on the rubble, showing that larvae did not reject this substrate as they did the algal mimic. This result raises the possibility that corals will settle on some macroalgae when their abundance is high. Most macroalgae, including H. opuntia, are ephemeral substrates unsuitable for post-settlement survival. Such unexpected settlement may therefore have significant consequences for coral recruitment success on algal-dominated reefs.     

Coral bleaching at Low Isles during the 1928–1929 Great Barrier Reef Expedition

Coral Reefs - The Great Barrier Reef Expedition (1928–1929) observed two of the earliest known examples of coral bleaching during a 13-month stay on Low Isles, northern Great Barrier Reef,...     

Ecomorph or Endangered Coral? DNA and Microstructure Reveal Hawaiian Species Complexes: Montipora dilatata/flabellata/turgescens & M. patula/verrilli

M. dilatata, M. flabellata, and M. patula and 80 other scleractinian corals were petitioned to be listed under the US Endangered Species Act (ESA), which would have major conservation implications. One of the difficulties with this evaluation is that reproductive boundaries between morphologically defined coral species are often permeable, and morphology can be wildly variable. We examined genetic and morphological variation in Hawaiian Montipora with a suite of molecular markers (mitochondrial: COI, CR, Cyt-B, 16S, ATP6; nuclear: ATPsβ, ITS) and microscopic skeletal measurements. Mitochondrial markers and the ITS region revealed four distinct clades: I) M. patula/M. verrilli, II) M. cf. incrassata, III) M. capitata, IV) M. dilatata/M. flabellata/M. cf. turgescens. These clades are likely to occur outside of Hawai'i according to mitochondrial control region haplotypes from previous studies. The ATPsβ intron data showed a pattern often interpreted as resulting from hybridization and introgression; however, incomplete lineage sorting may be more likely since the multicopy nuclear ITS region was consistent with the mitochondrial data. Furthermore, principal components analysis (PCA) of skeletal microstructure was concordant with the mitochondrial clades, while nominal taxa overlapped. The size and shape of verrucae or papillae contributed most to identifying groups, while colony-level morphology was highly variable. It is not yet clear if these species complexes represent population-level variation or incipient speciation (CA<1MYA), two alternatives that have very different conservation implications. This study highlights the difficulty in understanding the scale of genetic and morphological variation that corresponds to species as opposed to population-level variation, information that is essential for conservation and for understanding coral biodiversity.