"Carrier" theory and thermodynamics of irreversible processes.

A theory of transport via a "carrier" based on Wyman's theory on multiple equilibria is presented. By taking into account the detailed balance principle, it is possible to simplify the flux expressions and their coupling coefficients. In this way, Onsager's rules are derived. An experimental approach to the model is proposed.     

“Carrier” theory and thermodynamics of irreversible processes

A theory of transport via a “carrier” based on Wyman's theory on multiple equilibria is presented. By taking into account the detailed balance principle, it is possible to simplify the flux expressions and their coupling coefficients. In this way, Onsager's rules are derived. An experimental approach to the model is proposed.     

Structure for energy cycle: a unique status of the second law of thermodynamics for living systems

Distinguishing things from beings, or matters from lives, is a fundamental question. Extending E. Schr?dinger's neg-entropy and I. Prigogine's dissipative structure, we propose a chemical kinetic view that the earliest "live" process is embedded essentially in a special interaction between a pair of specific components under a particular, corresponding environmental conditions. The interaction exists as an inter-molecular-force-bond complex(IMFBC) that couples two separate chemical processes: one is the spontaneous formation of the IMFBC driven by a decrease of Gibbs free energy as a dissipative process; while the other is the disassembly of the IMFBC driven thermodynamically by free energy input from the environment. The two chemical processes coupled by the IMFBC originated independently and were considered non-living on Earth, but the IMFBC coupling of the two can be considered as the earliest form of metabolism: the first landmark on the path from things to a being. The dynamic formation and disassembly of the IMFBC, as a composite individual, follows a principle designated as "… structure for energy for structure for energy…", the cycle continues; and for short it will be referred to as "structure for energy cycle". With additional features derived from this starting point, the IMFBC-centered "live" process spontaneously evolved into more complex living organisms with the characteristics currently known.     

The mind body problem and the second law of thermodynamics

Cartesian mind body dualism and modern versions of this viewpoint posit a mind thermodynamically unrelated to the body but informationally interactive. The relation between information and entropy developed by Leon Brillouin demonstrates that any information about the state of a system has entropic consequences. It is therefore impossible to dissociate the mind's information from the body's entropy. Knowledge of that state of the system without an energetically significant measurement would lead to a violation of the second law of thermodynamics.     

Chemical selection, diversity, teleonomy and the second law of thermodynamics. Reflections on Eigen's theory of self-organization of matter

Two fundamental properties of animate matter, specific complexity and purposeful organization (teleonomy), are traced to their origin, applying Eigen's theory of self-organization of matter. Template-replicating copolymers possess the three dynamic properties that are essential for prebiotic evolution: autocatalysis, diversification and selection. By autocatalysis, even a single microscopic molecule replicates exponentially to macroscopic quantities. By diversification, it extends to a divergent distribution of such molecules. By selection, the distribution converges to a 'quasi-species' that possesses properties like 'survival' and 'adaptation' to its environment. These are teleonomic properties that evolved from a nonteleonomic distribution by selection. Alternating divergent and convergent courses of chemical evolution lead such distributions to ever-growing complexity, including mutual catalytic interactions between the template-replicating copolymers and their chemical environment. Thus, chemical evolution may have started from even a single step, a de novo synthesis of a template-replicating copolymer, and arrived at a primordial living cell, just as biological evolution has started from a primordial cell and arrived at the biological world of today.     

The magnetic field of a single axon. A comparison of theory and experiment.

The magnetic field and the transmembrane action potential of a single nerve axon were measured simultaneously. The volume conductor model was used to calculate the magnetic field from the measured action potential, allowing comparison of the model predictions with the experimental data. After analyzing the experiment for all systematic errors, we conclude that the shape of the magnetic field can be accurately predicted from the transmembrane potential and, more importantly, the shape of the transmembrane potential can be calculated from the magnetic field. The data are used to determine ri, the internal resistance per unit length of the axon, to be 19.3 +/- 1.9 k omega mm-1, implying a value for the internal conductivity of 1.44 +/- 0.33 omega -1 m-1. Magnetic measurements are compared with standard bioelectric techniques for studying nerve axons.     

Kinetics and thermodynamics of thermal denaturation in acyl carrier protein.

The denaturation of Escherichia coli acyl carrier protein (ACP) in buffers containing both monovalent and divalent cations was followed by variable-temperature NMR and differential scanning calorimetry. Both high concentrations of monovalent salts (Na+) and moderate concentrations of divalent salts (Ca2+) raise the denaturation temperature, but calorimetry indicates that a significant increase in the enthalpy of denaturation is obtained only with the addition of a divalent salt. NMR experiments in both low ionic strength monovalent buffers and low ionic strength monovalent buffers containing calcium ions show exchange between native and denatured forms to be slow on the NMR time scale. However, in high ionic strength monovalent buffers, where the temperature of denaturation is elevated as it is in the presence of Ca2+, the transition is fast on the NMR time scale. These results suggest that monovalent and divalent cations may act to stabilize ACP in different ways. Monovalent ions may nonspecifically balance the intrinsic negative charge of this protein in a way that is similar for native, denatured, and intermediate forms. Divalent cations provide stability by binding to specific sites present only in the native state.     

A theory of thermal fluctuations in DNA miniplasmids.

A recent analysis of the normal modes of vibration of a ring formed by bringing together and sealing, with or without the addition of twist, the ends of rods that are straight when stress free is taken as the basis for a theory of the statistical thermodynamics of a canonical ensemble of DNA minicircles with specified linking number difference deltaLk and number N of base pairs. It is assumed that N corresponds to a circumference in the range of one or two persistence lengths. For such an ensemble, the theory yields an expression for the average writhe (Wr), which can be employed to calculate the free energy, entropy, and enthalpy of supercoiling, deltaGsc, deltaSsc, and deltaHsc. The results obtained for the dependence of deltaGsc on deltaLk and N are in accord with experimental observations of equilibrium distributions of topoisomers of plasmids with N approximately 200 bp.