Somatic hybridization in citrus: An effective tool to facilitate variety improvement

Summary Citrus somatic hybridization and cybridization via protoplast fusion has become an integral part of citrus variety improvement programs worldwide. Citrus somatic hybrid plants have been regenerated from more than 200 parental combinations, and several cybrid combinations have also been produced. Applications of somatic hybridization to citrus scion improvement include the production of quality tetraploid breeding parents that can be used in interploid crosses to generate seedless triploids, and the direct production of triploids by haploid + diploid fusion. Applications of somatic hybridization to citrus rootstock improvement include the production of allotetraploid hybrids that combine complementary diploid rootstocks, and to combine citrus with sexually incompatible or difficult to hybridize genera that possess traits of interest for germplasm expansion. A few somatic hybrid tetraploid breeding parents have flowered, are fertile, and are being used as pollen parents to generate triploids. Several allotetraploid somatic hybrid rootstocks are performing well in commercial field trials, and show great promise for tree size control. Seed trees of most of these somatic hybrid rootstocks are producing adequate nucellar seed for standard propagation. Somatic hybridization is expected to have a positive impact on citrus cultivar improvement efforts.     

Paleolimnology: an important tool for effective ecosystem management

Effective management of aquatic resources requires long-term environmental data. However, because long-term observations are rarely available, indirect proxy methods must be used to substitute for these missing historical data sets. Major advances have been made in paleolimnology over the last decade, and many of these advances can be applied directly to integrated and cost-effective assessments of aquatic ecosystem health. This commentary uses the analogy of human health to argue that paleolimnological data provide information crucial to the decision-making processes of ecosystem managers.Keynote lecture, presented at the International Sumposium on Aquatic Ecosystem Health, Waterloo, Ontario, July 23, 1990.     

Molecular sexing of the communally breeding pukeko: an important ecological tool

A central biological parameter in the study of any animal population is the accurate assignment of sex. Indeed any ecological study of a population requires information on sex composition in relation to such biological factors as behaviour, movement, mortality and birth rate. However, our ability to assign the sex of adults of many avian species is poor and the sexing of young is universally difficult. We report here the successful application of a molecular technique for the assignment of sex in the communally breeding pukeko or purple swamphen ( Porphyrio porphyrio melanotus ). W- and Z-linked chromosome fragments in digested genomic DNA of pukeko were detected with the DNA probe pMg1. We consequently show that this species breeds in polyandrous, polygynous and polygynandrous groups. Finally we discuss why recent molecular methods represent important new tools in ecology.     

Protoplast fusion for production of tetraploids and triploids: applications for scion and rootstock breeding in citrus

Protoplast fusion technology has been utilized in many crops to generate allotetraploid somatic hybrids, and sometimes autotetraploids as a byproduct of the process. A brief history of this technology development is provided, along with a simple protocol developed for citrus, which can be easily adapted to other plants. Protoplast fusion has become a significant tool in ploidy manipulation that can be applied in various cultivar improvement schemes. In rare cases, a new somatic hybrid may have direct utility as an improved cultivar; however, the most important application of somatic hybridization is the building of novel germplasm as a source of elite breeding parents for various types of conventional crosses for both scion and rootstock improvement. Somatic hybridization is generating superior allotetraploid breeding parents for use in interploid crosses to generate seedless triploids. Seedlessness is a primary breeding objective for new fresh fruit citrus varieties, and several thousand triploid hybrids have been produced using somatic hybrids as the tetraploid parent. Protoplast fusion is also being utilized to produce somatic hybrids that combine complementary diploid rootstocks, which have shown good potential for tree size control. Tree size control has gained importance as a means of reducing harvesting costs, maximizing the efficiency of modern cold protection methodology, and facilitating the adaptation of new fruit production systems. Successful somatic hybridization in citrus rootstock improvement has enabled rootstock breeding at the tetraploid level via sexual hybridization, which can yield maximum genetic diversity in zygotic progeny upon which to impose selection for the many traits required in improved rootstock cultivars, including disease and insect resistance, broad adaptation, tree size control, and the ability to consistently produce high yields of quality fruit. Recent progress and successful examples of these applications are discussed. Finally, a discussion of the genetic potential of somatic hybrids as breeding parents, including meiotic behavior and inheritance is provided.     

Somatic embryogenesis in Pinus halepensis Mill.: an important ecological species from the Mediterranean forest

Pinus halepensis Mill. is a common forest species in the Mediterranean area and it is important for environmental conservation. This study established a method of regenerating Pinus halepensis Mill. through somatic embryogenesis. The effect of culture medium (mineral salts, nitrogen source and plant growth regulators), collection date and seed family on embryogenic tissue initiation and proliferation in Pinus halepensis was analysed during the first steps of embryogenesis process. This study showed a marked effect of the culture medium tested as well as some significant differences among collection dates. Furthermore, the embryogenic tissue initiation was affected by the amino acid mixture in the culture medium and the proliferation stage was significantly affected by the combination of plant growth regulators. At the end of the maturation phase the presence of activated charcoal was also evaluated. Finally, maturation of embryogenic tissue was affected by the nitrogen source in the culture medium and these results were different for high and low mature embryo producing cell lines. To the best of our knowledge, this is the first report on Aleppo pine somatic embryogenesis describing a simple and efficient procedure for large-scale somatic embryo production.     

Ultrasonography: an important tool in captive breeding management in elephants and rhinoceroses

Nearly two decades ago, modern wildlife medicine started to gradually use the advantages of the non-invasive ultrasonography, which was already well established in human and classical veterinary medicine. For more than one decade now, the application of imaging ultrasound for reproductive assessments and as a supportive tool during assisted reproduction procedures such as artificial insemination (AI) in elephants and rhinoceroses has dramatically improved the breeding success in captive breeding programmes. The opportunity for identifying potential breeding candidates on the basis of their reproductive health status is widely used for natural mating or for AI, today. The longitudinal sonographic monitoring of pathological processes on the internal female genital tract allowed the identification of pathogenetic causes for the rapid infertility development in older nulliparous females. The factors causing temporary infertility in captive male elephants and rhinoceroses were also identified by the use of ultrasound. Today, ultrasonography is the golden standard for reproductive assessments in megavertebrates such as elephants and rhinoceroses in captive management settings and also in the wild.     

Homology modeling: an important tool for the drug discovery

In the last decades, homology modeling has become a popular tool to access theoretical three-dimensional (3D) structures of molecular targets. So far several 3D models of proteins have been built by this technique and used in a great diversity of structural biology studies. But are those models consistent enough with experimental structures to make this technique an effective and reliable tool for drug discovery? Here we present, briefly, the fundamentals and current state-of-the-art of the homology modeling techniques used to build 3D structures of molecular targets, which experimental structures are not available in databases, and list some of the more important works, using this technique, available in literature today. In many cases those studies have afforded successful models for the drug design of more selective agonists/antagonists to the molecular targets in focus and guided promising experimental works, proving that, when the appropriate templates are available, useful models can be built using some of the several software available today for this purpose. Limitations of the experimental techniques used to solve 3D structures allied to constant improvements in the homology modeling software will maintain the need for theoretical models, establishing the homology modeling as a fundamental tool for the drug discovery.     

基因组学: 理解植物入侵性的重要工具

入侵植物基因组学是一个新兴的研究领域, 它利用基因组学方法研究与植物入侵性相关的分子基础和表达调控机制, 甄别入侵性基因型, 进而在基因组水平上揭示外来种入侵性产生和进化的分子机制。本文扼要综述了可用于植物入侵生物学研究的主要基因组学方法, 包括比较基因组学、群体基因组学和表观基因组学等方法; 运用基因组学技术研究入侵植物除草剂抗性和根状茎发育的分子基础已取得了重要进展。然而, 入侵植物基因组学仍处于发展初期, 选择理想的入侵植物模式种, 建立入侵性研究的模式系统, 是当前亟待解决的问题。本文还提出了入侵植物基因组学研究值得关注的几个发展方向, 包括基因组信息的完善、不同环境条件下入侵植物的分子响应机制以及入侵性的系统生物学研究等。     

Conservation breeding programmes: an important ingredient for species survival

Captive populations for the primary purpose of securing the survival of species through stable self-sustaining populations need to be founded and managed according to sound scientific principles. Given the current rate of habitat fragmentation and its effect on animal populations, species conservation over the long term increasingly will require management to reduce risk of extinction. This may include ex situ populations which can support and interact demographically and genetically with wild populations. This paper presents a review of what can be achieved through a multidisciplinary approach, involving science, interactive management, politics, environmental education, habitat preservation and habitat restoration. Examples of what conservation-oriented breeding programmes have contributed to date, what represents a viable population and what is meant by effective conservation are provided, and various scenarios for the future are discussed.     

Enhancement of citrus resistance to the Mediterranean fruit fly

Precolorbreak treatment of Marsh grapefruit and Shamouti and Valencia oranges with 20 or 50 ppm gibberellic acid (GA) reduced fruit susceptibility to laboratory infestation by Ceratitis capitata (Wiedemann). Treatment effects were dose-dependent and the benefits were most pronounced with the orange cultivars. The implications of these findings are discussed in relation to use of GA treatment for improved fruit fly control in citrus.

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Zusammenfassung In den hier beschriebenen Versuchen wurde untersucht, wie weit durch die Anwendung von Gibberilinsäure (GA) im Freiland die Resistenz von Pampelmuse (Marsh), sowie von Shamoutiund Valencia-Orangen gegenüber Befall durch die Mittelmeerfruchtfliege, Ceratitis capitata (Wiedemann) gesteigert werden kann.In den Jahren 1982/83 spritzten wir in Israel Bäume dieser drei Zitrusarten mit GA in den Konzentrationen von 5 ppm und 50 ppm zu zwei verschiedenen Zeitpunkten vor dem Farbumschlag der Früchte (September, Oktober). Die so behandelten Früchte wurden anschliessend während der Reifeperiode in verschiedenen Zeitpunkten adulten Mittelmeerfruchtfliegen für die Eiablage dargeboten. Diese Exposition wurde sowohl im Freiland mit Früchten am Baum sowie im Laboratorium mit gepflückten Früchten durchgeführt. Untersucht wurde einerseits die Anfälligkeit resp. Resistenz der Früchte bezüglich der Eiablage, andererseits die Entwicklung der Larven in den Früchten.Wir stellten fest, dass die Behandlung mit GA bei Pampelmuse in Abhängigkeit vom Zeitpunkt und Konzentration der Behandlung eine gewisse erhöhte Befallsresistenz bewirken konnte. Bezüglich der beiden geprüften Orangensorten konnten wegen ungünstigen Witterungsbedingungen während der Reifezeit keine schlüssigen Befunde erarbeitet werden.Im Winterhalbjahr 1983/84 wurden Bäume aller drei Zitrussorten vor dem Farbwechsel der Früchte mit 20 ppm und 50 ppm GA behandelt. Um den negativen Einfluss der Witterung in den Expositionsversuchen auszuschalten, wurden die Versuchsfrüchte den Fruchtfliegen während der Reifeperiode ausschliesslich im Laboratorium dargeboten. In dieser Versuchsperiode stellten wir auch bei Orangen eine erhöhte Widerstandsfähigkeit gegen Fruchtfliegenbefall fest, und zwar in erhöhtem Ausmass bei Valencia-Orangen. Gleichzeitig beobachteten wir eine stark verzögerte Entwicklung des Farbwechsels von grün auf orange als Folge der hohen GA-Konzentration.

     

Somatic hybridization in Nicotiana: Restoration of photoautotrophy to an albino mutant with defective plastids

Protoplasts of a cytoplasmic albino mutant of Nicotiana tabacum L. characterized by a deficient chloroplast genome were fused with protoplasts of a nitrate-reductase deficient mutant (NR^-) of N. tabacum. Somatic hybrids were obtained where the genome of the NR^- mutant was complemented by the cytoplasmic albino mutant which could synthesize an active nitrate reductase, and the chlorophyll deficiency in the albino mutant was restored by the chloroplasts from the NR^- mutant. Cybrids were also obtained in which the deficient plastids of the cytoplasmic albino mutant were replaced by normal chloroplasts from the NR^- mutant. The system used permitted a simple selection of the hybrids and the cybrids. The NR^- mutant was excluded at the cellular level by transfer of the cells to medium deficient in reduced nitrogen. The cytoplasmic albino mutant grew well on the selective nitrate medium. However, during callus formation, clear differences in the morphology and pigmentation of the calli were found which permitted selection for photoautotrophy at the callus level. The hybrid or cybrid nature of the plants was confirmed by examination of their morphology and chromosome number. Although the fusion partners come from the same species, only one plant showed the white-green variegated pattern typical of that of the cytoplasmic albino parent, indicating that segregation of plastids occurred during development of the calli and regeneration of the plants.     

HBV转基因小鼠--乙型肝炎研究的重要工具

HBV感染具有严格的种属特异性和组织亲嗜性,所以可用于研究的动物模型很少。随着转基因技术的出现和发展,人们通过研制转基因动物模型来研究病毒致病机理。把HBV的DNA或其片段转入小鼠受精卵建立起来的HBV转基因小鼠,已被广泛地应用于乙型肝炎的研究中,主要体现在以下3个方面：研究HBV的致病机制、与肝细胞癌的关系及寻找、评价治疗乙肝的方法。     

Ultrathin cryosections: an important tool for immunofluorescence and correlative microscopy.

Here we show that ultrathin cryosections of placental tissue can be used as a substrate in immunofluorescence experiments. A high degree of spatial resolution can be achieved in these preparations because there is essentially no out-of-focus fluorescence. Therefore, immunofluorescence microscopy using ultrathin cryosections provides a very useful method for determining the precise subcellular localization of antigens in tissues. In addition, ultrathin cryosections of placenta also serve as a substrate for correlative immunofluorescence and immunoelectron microscopy using FluoroNanogold as the detection system. In correlative microscopy, the exact same structures in the same ultrathin section were observed by both fluorescence and electron microscopy. Using a particle counting procedure and electron microscopy, we compared the labeling obtained with colloidal gold and FluoroNanogold and found a higher number of particles with silver-enhanced FluoroNanogold than with colloidal gold.     

化学修饰--提高酶催化性能的重要工具

讨论了化学修饰对酶的稳定性、有机溶剂溶解性、特殊条件下的活性和选择性的影响。对常见的和近期出现的酶修饰技术,包括交联酶晶体、酶蛋白侧链功能基共价修饰、酶蛋白表面修饰、结合定点突变的化学修饰、通过酶活性位点氨基酸原子置换进行化学突变等方法作了重点阐述。     

Post-translational modifications of proteins: some problems left to solve

Three major questions regarding the post-translational modification of amino acid side chains in proteins are briefly considered: (1) What are the biological functions of the reactions, (2) what is the specificity of the processing reactions in selecting only a few or sometimes even only one residue for modification, and (3) how do we solve the uniqueness of the processing steps in the production of recombinant proteins? The answers to these questions are not obvious at this time.     

Random-priming in vitro recombination: an effective tool for directed evolution.

A simple and efficient method for in vitro mutagenesis and recombination of polynucleotide sequences is reported. The method involves priming template polynucleotide(s) with random-sequence primers and extending to generate a pool of short DNA fragments which contain a controllable level of point mutations. The fragments are reassembled during cycles of denaturation, annealing and further enzyme-catalyzed DNA polymerization to produce a library of full-length sequences. Screening or selecting the expressed gene products leads to new variants with improved functions, as demonstrated by the recombination of genes encoding different thermostable subtilisins in order to obtain enzymes more stable than either parent.     

Modelling important areas for breeding waders as a tool to target conservation and minimise conflicts with land use change

Breeding waders are high profile species of conservation concern because of their declining populations. Their future depends on the outcomes of land-use policy and local management decisions. However, the low spatial resolution of extensive data on wader occurrence is poorly suited to directing conservation initiatives or to minimising detrimental impacts arising from land-use changes such as forest expansion. We used statistical models to produce high-resolution maps of predicted wader abundance in Britain and tested whether these were sufficiently accurate to be used for decision making. Random forest regression trees were developed using Bird Atlas data modelled with a range of environmental data sets to predict the relative abundances of ten species of breeding wader across Britain at 1-km square resolution. Similar analytical frameworks could usefully be applied in other geographical areas.Correlations with Bird Atlas metrics and other independent data indicate that these predictive models worked best for Curlew Numenius arquata and Oystercatcher Haematopus ostralegus. Model performance was poorer for species with more restricted distributions and/or habitat requirements, such as Greenshank Tringa nebularia and Ringed Plover Charadrius hiaticula. The precision of model predictions was also limited by the rescaling of data to 1-km square resolution.To facilitate practical and consistent interpretation by stakeholders influencing the status of breeding waders, model outputs were categorised into five discrete strata of relative abundance. These strata were used to produce sensitivity maps (available at https://app.bto.org/wader-map/), primarily to inform high-level policy decisions. The model outputs were also used to investigate broad-scale associations of breeding wader distribution with landscapes and land uses. These show that high proportions of populations (relative to their extent) are supported by areas with comparatively low predation risk (e.g. islands and grouse moors) and also by nature reserves. At more local scales, the sensitivity maps can be used to help decide on the levels of scrutiny required to assess development proposals (e.g. for establishment of new tree planting).     

Xcc-facilitated agroinfiltration of citrus leaves: a tool for rapid functional analysis of transgenes in citrus leaves

Key message

Xanthomonas citri subsp. citri pretreatment before agroinfiltration could significantly promote transient expression in citrus leaves which were previously recalcitrant to agroinfiltration.

Abstract

Transient expression via agroinfiltration is widely used in biotechnology but remains problematic in many economically important plants. Xanthomonas citri subsp. citri (Xcc)-facilitated agroinfiltration was employed to promote transient protein expression in Valencia sweet orange leaves, which are recalcitrant to agroinfiltration. However, it is unclear whether Xcc-facilitated agroinfiltration has broad application, i.e., whether Xcc-facilitated agroinfiltration could be used on other citrus varieties. In addition, we intended to investigate whether Xcc-facilitated agroinfiltration could be used to hasten transgene function assays, e.g., Cre/lox system and Cas9/sgRNA system. In this report, Xcc-facilitated agroinfiltration was further exploited to enhance β-glucuronidase (GUS) expression in five citrus varieties. Xcc-facilitated agroinfiltration also significantly increased GFP expression in six citrus varieties tested. Both GUS and GFP assays indicated that Xcc-facilitated agroinfiltration had the best performance in grapefruit. After Xcc-facilitated agroinfiltration was carried out in grapefruit, protoplast analysis of the transformed cells indicated that there were more than 20 % leaf cells expressing GFP. In grapefruit, usefulness of Xcc-facilitated agroinfiltration was assayed in three case studies: (1) fast functional analysis of Cre/lox system, (2) the heat shock regulation of HSP70B promoter derived from Arabidopsis, and (3) Cas9/sgRNA-mediated genome modification.