Enhancement of Emission Efficiency of Deep-Ultraviolet AlGaN Quantum Wells Through Surface Plasmon Coupling with an Al Nanograting Structure

The enhancement of the internal quantum efficiency (IQE) of deep-ultraviolet Al _x Ga_1-x N/Al _y Ga_1-y N (x < y) quantum wells (QWs) by fabricating one-dimensional Al nanogratings on a QW structure for inducing surface plasmon (SP) coupling is demonstrated. Through temperature-dependent photoluminescence (PL) measurement, the enhancements of IQE in different emission polarizations are illustrated. Due to the small difference in energy band level between the heavy/light hole and split-off valence bands, the IQEs of the transverse electric- (TE-) and transverse magnetic- (TM-) polarized emissions are about the same. When emission polarization is perpendicular to Al-grating ridges, the SP resonance mode for coupling with the QWs is dominated by localized surface plasmon (LSP). When emission polarization is parallel with Al-grating ridges, the coupled SP resonance mode may mix LSP and SP polariton. In this polarization, LSP can be excited because of the width fluctuation of a grating ridge. When the excitation laser polarization is perpendicular to Al-grating ridges, the strong LSP resonance at the excitation laser wavelength leads to stronger excitation and hence higher IQE levels.     

Amplifying the Interaction Between Two Identical Metallic Nanoparticles with a Large Interface Distance Based on the Strong Coupling-Like Phenomenon Involving Molecular J-aggregates

We introduce a new way to amplify the interaction between two identical metallic nanoparticles with a large interface distance (≥the radius of each nanoparticle). The proposed structure consists of two identical metallic nanoparticles embedded in molecular J-aggregates and the strong coupling-like phenomenon is described by the scattering spectra. Finite difference time domain (FDTD) method is employed to simulate this structure and the simulation results match the experiment well (Eizner et al., Nano Lett 15:6215–6221 2015; Lin et al., Nano Lett 15:4699–4703 2015; Zengin et al., Phys Rev Lett 114:157401 2015). Molecular J-aggregates take important roles in the strong coupling-like phenomenon and can be used to amplify the interaction between the particles. The scattering spectra of this proposed structure have two separated peaks, whose shifts are larger than those in the air with the interface distance decreasing. The coupling strength between the nanoparticles and the amplification of the interaction can be tuned by the incident polarization. This structure has potential applications in the field of quantum communications such as the quantum network, the quantum key distributions, and so on.

     

Coupling Efficiency of Surface Plasmon Polaritons for 1D Plasmonic Gratings: Role of Under- and Over-Milling

This paper reports the successful excitation of surface plasmon polaritons (SPPs) through 1D metallic grating on higher refractive index GaP substrate. Coupling efficiency (η) of a free-space transverse-magnetic (TM) plane-wave mode into a SPP mode is crucial for many plasmonic devices. This η predominantly depends on the fabrication (milling) parameters and the factors (under- and over-milling) affecting the η is investigated experimentally and numerically. First of all, η is estimated by measuring the transmission spectra obtained through the plasmonic grating structures by varying the slit width (a) for a fixed period (Λ) and the thickness (t) of the gold (Au) film in which the grating is formed. The wave vector of the incident light is tuned to match the wave vector of the SPP, to get maximum η. For an optimum Au film thickness, a slit width of half of the periodicity of 770 nm in the grating device yields a maximum η. Such grating devices support only a fundamental plasmonic mode because the profile/shape of the slit in the grating device is more like a sinusoidal nature. Furthermore, such grating offers intermediate scattering to the incident light and the SPP as well which in-truns couple more incident energy to the SPPs. Moreover, over-milling results in decreased η where the crystalline plane of the substrate is disturbed. Finite element method (FEM) in COMSOL modeling is used to understand the underlying physics. This study is very useful for the development of the device application in real word.     

Water sources and water-use efficiency of desert plants in different habitats in Dunhuang,NW China

To understand habitat associated differences in desert plant water-use patterns, water stable oxygen isotope composition was used to determine water source and leaf carbon isotope composition (δ ¹³C) was used to estimate long-term water-use efficiency in three typical habitats (saline land, sandy land and Gobi) in Dunhuang. The primary findings are: (1) in the three habitats, plant species used mainly deep soil water (>120 cm), except for Kalidium foliatum in the saline land, which relied primarily on 0–40 cm soil water; (2) in the saline land and Gobi habitat, Alhagi sparsifolia had the most negative foliar δ ¹³C; in the sandy land, Elaeagnus angustifolia leaf was enriched in ¹³C than the other three species in 2011, but no species differences in foliar δ ¹³C was observed among the four species in 2012; (3) common species (Tamarix ramosissima and A. sparsifolia) may alter their water sources to cope with habitat differences associated changes in soil water availability with deeper water sources were used in the Gobi habitat with lower soil water content (SWC) compared to in the saline land and sandy land; (4) we detected significant habitat differences in foliar δ ¹³C in A. sparsifolia which may have resulted from differences in SWC and soil electrical conductivity. However, no habitat differences in foliar δ ¹³C were observed in T. ramosissima, which may attribute to the strong genetic control in T. ramosissima or the ability to access stable deep soil water. Overall, the results suggest that extremely arid climate, root distribution and soil properties worked together to determine plant water uptake in Dunhuang area.     

A Polarization Filter Based on a Novel Photonic Crystal Fiber with a Gold-Coated Air Hole by Using Surface Plasmon Resonance

A novel design of a polarization filter based on photonic crystal fiber (PCF) is proposed in this paper. With the introduction of a gold-coated air hole, the resonance strength is much stronger in y-polarized direction than in x-polarized direction at some particular wavelengths, which is due to the metal surface plasmon effects. At the wavelength of 1.31 μm, the loss of y-polarized mode is 2138.34 dB/cm while the loss is very low in x polarization. Furthermore, the loss peak can be flexibly adjusted from the wavelength of 1.26 to 1.56 μm by changing the thickness of a gold layer, and the loss in y polarization can be kept above 1200 dB/cm. The significant loss in y polarization makes this PCF a good candidate for developing a polarization filter with high performance.     

Physiological and biochemical responses of photomorphogenic tomato mutants (cv. Micro-Tom) under water withholding

In addition to mediating photomorphogenesis, phytochromes are responsible for many abiotic stress responses, acting upon biochemical and molecular mechanisms of cell signaling. In this work, we measured the physiological and biochemical responses of phytochrome-mutant plants under water stress. In tomato (Solanum lycopersicum L.), the aurea mutant (au) is phytochrome-deficient and the high-pigment-1 mutant (hp1) has exaggerated light responses. We examined the effects of water withholding on water potential, leaf gas exchange, chlorophyll fluorescence, chloroplast pigment content and antioxidant enzyme activity in au and hp1 and their wild-type cultivar Micro-Tom (MT). Initial fluorescence and potential quantum efficiency of photosystem II (PSII) photochemistry were not affected by the treatment, but effective quantum yield of PSII, electron transport rate decreased and non-photochemical quenching increased significantly in MT. Under water withholding conditions, MT had higher malondialdehyde concentration than the mutants, but au had higher activities of catalase and ascorbate peroxidase compared to the other genotypes. The tolerance of mutants to the effects of water withholding may be explained by the higher activity of antioxidant enzymes in au and by a higher concentration of antioxidant compounds, such as carotenoids, in hp1.     

Genome-wide analysis and expression profiling of the phospholipase D gene family in Gossypium arboreum

The plant phospholipase D(PLD)plays versatile functions in multiple aspects of plant growth,development,and stress responses.However,until now,our knowledge concerning the PLD gene family members and their expression patterns in cotton has been limited.In this study,we performed for the first time the genome-wide analysis and expression profiling of PLD gene family in Gossypium arboretum,and finally,a total of 19 non-redundant PLD genes(GaPLDs)were identified.Based on the phylogenetic analysis,they were divided into six well-supported clades(α,β/γ,δ,ε,ζ and φ).Most of the GaPLD genes within the same clade showed the similar exon-intron organization and highly conserved motif structures.Additionally,the chromosomal distribution pattern revealed that GaPLD genes were unevenly distributed across 10 of the 13 cotton chromosomes.Segmental duplication is the major contributor to the expansion of Ga PLD gene family and estimated to have occurred from19.61 to 20.44 million years ago when a recent large-scale genome duplication occurred in cotton.Moreover,the expression profiling provides the functional divergence of GaPLD genes in cotton and provides some new light on the molecular mechanisms of GaPLDα1 and GaPLDδ2 in fiber development.     

Plasmonic Broadband Polarization Splitter Based on Dual-Core Photonic Crystal Fiber with Elliptical Metallic Nanowires

We design two kinds of plasmonic broadband polarization splitters based on dual-core photonic crystal fiber (DC-PCF) with elliptical Au or Ag nanowire in this paper. It is analyzed for the polarization independent characterestics of the designed DC-PCF by the finite element method (FEM). In order to excite the surface plasmon resonance (SPR), the metal Au and Ag are filled into elliptical central air hole. The resonance coupling between the fourth- or fifth-order surface plasmon modes (SPMs) and core-guided modes (CGMs) are founded by this numerical simulation. The device lengths of the designed splitters with Au nanowire are 2937 and 827 μm at the wavelength of 1.31 and 1.55 μm, respectively. As the extinction ratios are better than ?20 dB, its bandwidths are better than 94 and 103 nm. For the designed Ag nanowire splitter, the device lengths are 3066 or 809 μm at 1.31 or 1.55 μm, respectively. The bandwidths with the extinction ratio better than ?20 dB are 66 and 104 nm, respectively.     

Global dataset for carbon and nitrogen stable isotope ratios of lotic periphyton

Carbon and nitrogen stable isotope ratios (δ¹³C and δ¹⁵N) have been widely employed in food web analysis. In lotic environments, periphyton is a major primary producer that makes a large contribution to food web production as well as carbon and nitrogen cycling. While the δ¹³C and δ¹⁵N values have many advantages as a natural tracer, the controls over their high spatial and temporal variability in stream periphyton are not well known. Here, we present the global dataset of δ¹³C and δ¹⁵N values of lotic periphyton from 54 published and two unpublished sources, including 978 observations from 148 streams/rivers in 38 regions around the world, from arctic to tropical sites. The 54 published sources were articles recorded during the period of 1994–2016 in 25 academic journals. The two unpublished sources were from the authors’ own data. The dataset showed that δ¹³C and δ¹⁵N values of periphyton ranged from ?47.3 to ?9.3‰ and from ?5.6 to + 22.6‰, respectively. The dataset also includes physicochemical factors (altitude, coordinates, catchment area, width, depth, geology, vegetation, canopy coverage, biome, season, presence of anadromous salmon, temperature, pH, current velocity, and discharge), nutrient data (nitrate and ammonium concentrations), and algal attributes (chlorophyll a concentration, algal species compositions, and carbonates removal) in streams/rivers studied, all of which may help interpret the δ¹³C and δ¹⁵N values of periphyton. The metadata file outlines structure of all the data and with references for data sources, providing a resource for future food web studies in stream and river ecosystems.     

Properties of Surface Plasmon Polaritons Excited by Radially Polarized Sinh Gaussian Beams

Properties of surface plasmon polaritons (SPPs) excited by radially polarized sinh Gaussian beams with high-numerical-aperture system is investigated theoretically based on vector diffraction theory. It is observed that by properly tuning the beam waist size (w ₀ ) and beam order (m) of the incident sinh Gaussian beam, one can achieve higher confinement in axial and lateral size of the generated plasmonic focal spot. We observed that sinh Gaussian beam of larger w ₀ and m results in generation of highly confined plasmonic focal spot.     

A new giant egg-laying onychophoran (Peripatopsidae) reveals evolutionary and biogeographical aspects of Australian velvet worms

Representatives of Ooperipatellus (Peripatopsidae) are among the smallest onychophorans known, commonly varying between 10 and 20 mm in length. Herein, we present a peculiar new species of Ooperipatellus from Tasmania that can exceed twice the length of other representatives of this taxon. Ooperipatellus nickmayeri sp. nov. is comprehensively described based on morphological, molecular, karyological and slime protein profile data. Morphological analyses expose a set of novel features in this species, including a swollen area covered with a modified integument on the posterior border of the male genital pad, modified papillae on the female ovipositor and the presence of pseudoplicae in the dorsal integument. The evolutionary significance of pseudoplicae remains unclear, but similarities between O. nickmayeri sp. nov. and Plicatoperipatus jamaicensis, the only species from which these structures were previously known, suggest they evolved due to functional constraints of the onychophoran integument. Our karyological investigation further revealed that the new species has the largest karyotype known within Peripatopsidae (2n = 50, XY). Finally, the results of our molecular phylogenetic analyses support the recognition of O. nickmayeri sp. nov. and shed light on previously unclear aspects of the biogeographical history of Ooperipatellus in Southern Australia, Tasmania and New Zealand.     

Effects of cycloheximide on photosynthetic abilities,reflectance spectra and fluorescence emission spectra in <Emphasis Type="Italic">Phyllostachys edulis</Emphasis>

Key message

CHX had remarkable inhibition on P. edulis photosynthesis, and the reflectance indexes and F ₆₈₅ / F ₇₃₅ had the potential value for quantifying the effects of antibiotics on trees.

Abstract

To reveal the effects of antibiotics on photosynthesis and provide help for remote sensing the influence of antibiotics on trees, we investigated the effects of cycloheximide (CHX) on Phyllostachys edulis. In CHX treatment, the photosynthetic pigment content in P. edulis was decreased markedly, which led to the increase in the reflectance spectra in visible region. CHX reduced the donor side and acceptor side of photosystem II (PSII), density of reaction centers, quantum production and electron transport in PSII, and raised the dissipation of absorbed light energy. Besides the dissipation, the absorbed light energy can be emitted as fluorescence with two main peaks in the red (685 nm) and far-red (735 nm) region, respectively. In 0.50 mM CHX treatment, a significant decline in the height and area of the peak at 685 nm might result from Chl loss reducing the light absorption and lower photochemical reaction in PSII. When fourth derivative analysis of fluorescence emission spectra was performed, the changes of the peaks at 718, 735 and 750 nm might result from the decline of absorbed solar radiation caused by the reduced pigment content and/or the damages to the PSI. In CHX treatment, a remarkable increase in intercellular CO₂ concentrations and light compensation point and decrease in light saturation point demonstrated that the CO₂ assimilation ability was decreased. Those results suggested that the photosynthesis in trees can be reduced after they were watered with wastewater containing CHX. The reflectance indexes and F ₆₈₅/F ₇₃₅ (H ₆₈₅/H ₇₃₅ and A ₆₈₅/A ₇₃₅) were markedly affected by CHX, demonstrating that they had the potential value for quantifying the effects of antibiotics on trees.

     

Purification,characterization, gene cloning and sequencing of a new β-glucosidase from <Emphasis Type="Italic">Aspergillus niger</Emphasis> BE-2

The cDNA gene (BgL1), encoding GH3 family β-glucosidase (EC 3.2.1.21) from Aspergillus niger BE-2 (abbreviated to BgL1), was amplified and inserted into the yeast expression pPIC9K vector at the site of Bln I (Avr II) and NotI. The recombinant expression vector, designated as pPIC9K-BgL1, was transformed into Pichia pastoris GS115. The transformants were screened on minimal dextrose plates, which inoculated on geneticin G418-containing yeast extract-peptone-dextrose plates. The transformants expressed the high β-glucosidase activity of 22.6 U/mL. SDS-PAGE demonstrated that the BgL1 was extracellularly expressed with an apparent molecular weight of 90.0 kDa. The purified BgL1 displayed the maximum activity at pH 6.0 and 60°C. It was highly stable at a broad pH range of 4.0–7.5 and temperature of 60°C. The BgL1 displayed high similarity to the β-glucosidases of A. niger FN430671 and A. niger DQ655704, the members of the GH3 family. Its three-dimensional structure was predicted using http://swiss-model.expasy.org/ on-line programs based on the crystal structure of Aspergillus aculeatus β-glucosidase.     

Cloning and functional analysis of two <Emphasis Type="Italic">GmDeg</Emphasis> genes in soybean [<Emphasis Type="Italic">Glycine max</Emphasis> (L.) Merr.]

Although light is the ultimate substrate in photosynthesis, strong light can also be harmful and lead to photoinhibition. The DEG proteases play important roles in the degradation of misfolded and damaged proteins. In this study, two photoinhibition-related genes from soybean [Glycine max (L.) Merr.], GmDeg1 and GmDeg2, were cloned. Bioinformatics analysis indicated that these two proteases both contain a PDZ domain and are serine proteases. The expression levels of GmDeg1 and GmDeg2 increased significantly after 12 h of photooxidation treatment, indicating that GmDeg1 and GmDeg2 might play protective roles under strong light conditions. In in vitro proteolytic degradation assays, recombinant GmDeg1 and GmDeg2 demonstrated biological activities at temperatures ranging from 20°C to 60°C and at pH 5.0 to 8.0. By contrast, the proteases showed no proteolytic effect in the presence of a serine protease inhibitor. Taken together, these results provided strong evidence that GmDeg1 and GmDeg2 are serine proteases that could degrade the model substrate in vitro, indicating that they might degrade damaged D1 protein and other mis-folded proteins in vivo. Furthermore, GmDeg1 and GmDeg2 were transformed into Arabidopsis thaliana to obtain transgenic plants. Leaves from the transgenic and wild-type plants were subjected to strong light conditions in vitro, and the PSII photochemical efficiency (Fv/Fm) was measured. The Fv/Fm of the transgenic plants was significantly higher than that of the wild-type plants at most time points. These results imply that GmDeg1 and GmDeg2 would have similar functions to Arabidopsis AtDeg1, thus accelerating the recovery of PSII photochemical efficiency.     

Introgression of <Emphasis Type="Italic">UfCyt c</Emphasis><Subscript>6</Subscript>, a thylakoid lumen protein from a green seaweed <Emphasis Type="Italic">Ulva fasciata</Emphasis> Delile enhanced photosynthesis and growth in tobacco

Cytochromes are important components of photosynthetic electron transport chain. Here we report on genetic transformation of Cytochrome c₆ (UfCyt c₆) gene from Ulva fasciata Delile in tobacco for enhanced photosynthesis and growth. UfCyt c₆ cDNA had an open reading frame of 330 bp encoding a polypeptide of 109 amino acids with a predicted molecular mass of 11.65 kDa and an isoelectric point of 5.21. UfCyt c₆ gene along with a tobacco petE transit peptide sequence under control of CaMV35S promoter was transformed in tobacco through Agrobacterium mediated genetic transformation. Transgenic tobacco grew normal and exhibited enhanced growth as compared to wild type (WT) and vector control (VC) tobacco. Transgenic tobacco had higher contents of photosynthetic pigments and better ratios of photosynthetic pigments. The tobacco expressing UfCyt c₆ gene exhibited higher photosynthetic rate and improved water use efficiency. Further activity of the water-splitting complex, photosystem II quantum yield, photochemical quenching, electron transfer rate, and photosynthetic yield were found comparatively higher in transgenic tobacco as compared to WT and VC tobacco. Alternatively basal quantum yield of non-photochemical processes in PSII and non-photochemical quenching were estimated lower in tobacco expressing UfCyt c₆ gene. As a result of improved photosynthetic performance the transgenic tobacco had higher contents of sugar and starch, and exhibited comparatively better growth. To the best of our knowledge this is the first report on expression of UfCyt c₆ gene from U. fasciata for improved photosynthesis and growth in tobacco.     

Physiological acclimation of <Emphasis Type="Italic">Lessonia spicata</Emphasis> to diurnal changing PAR and UV radiation: differential regulation among down-regulation of photochemistry,ROS scavenging activity and phlorotannins as major photoprotective mechanisms

Intertidal macroalgae are constantly subjected to high variations in the quality and quantity of incident irradiance that can eventually generate detrimental effect on the photosynthetic apparatus. The success of these organisms to colonize the stressful coastal habitat is mainly associated with the complexity of their morphological structures and the efficiency of the anti-stress mechanisms to minimize the physiological stress. Lessonia spicata (Phaeophyceae), a brown macroalga, that inhabits the intertidal zone in central–southern Chile was studied in regard to their physiological (quantum yield, electron transport rate, pigments) and biochemical (phlorotannins content, antioxidant metabolism, oxidative stress) responses during a daily light cycle under natural solar radiation. Major findings were that F _v/F _m, photosynthetic parameters (ETR_max, alpha, E _k) and pigments in L. spicata showed an inverse relationship to the diurnal changes in solar radiation. Phlorotannins levels and antioxidant activity showed their highest values in treatment that included UV radiation. There was an increase in SOD and APX in relation at light stress, with a peak in activity between 5.2 and 10.1 W m^?2 of biologically effective dose. The increase in peroxidative damage was proportional to light dose. These results indicated that different light doses can trigger a series of complementary mechanisms of acclimation in L. spicata based on: (i) down-regulation of photochemistry activity and decrease in concentration of photosynthetic pigments; (ii) induction of phenolic compounds with specific UV-screening functions; and (iii) reactive oxygen species (ROS) scavenging activity via complementary repair of the oxidative damage through increased activity of antioxidant enzymes and potentially increased amounts of phenolic compounds.     

A Novel Terahertz Semiconductor Metamaterial for Slow Light Device and Dual-Band Modulator Applications

In this paper, we propose a novel planar semiconductor metamaterial which consists of two H-shape structures which are nested together and composed of InSb deposited on a thin quartz substrate. The two H-shape structures serve as the bright modes and are exited strongly by the incident wave and interact with each other. This coupling leads to a powerful plasmonically induced transparency (PIT) effect at terahertz frequencies. This scheme provides a way to achieve slow light, and the corresponding group index can reach a value of 1300. We calculated group velocity dispersion (GVD) and saw this structure was a low group velocity dispersion (LGVD) system. Therefore, the proposed structure will be useful in designing slow-light devices, optical buffers, delay lines, and ultra-sensitive sensors. We also showed that the proposed design is tunable, namely changes in geometric parameters and type of semiconductor can largely change the group index. In addition, we considered another application for our design that is a thermal dual-band terahertz metamaterial modulator and numerically obtained frequency and amplitude modulation depth, tunability bandwidth, and loss for this device. We obtained an amplitude modulator depth of 99.7 % and a frequency modulator depth of 47 % that verified this structure can be used in wireless communication and encode information systems in the THz regime.