Microbiological and biogeochemical processes in a pockmark of the Gdansk depression,Baltic Sea

Comprehensive microbiological and biogeochemical investigation of a pockmark within one of the sites of gas-saturated sediments in the Gdansk depression, Baltic Sea was carried out during the 87th voyage of the Professor Shtokman research vessel. Methane content in the near-bottom water and in the underlying sediments indicates stable methane flow from the sediment into the water. In the 10-m water layer above the pockmark, apart from methane anomalies, elevated numbers of microorganisms and enhanced rates of dark CO₂ fixation (up to 1.15 µmol C/(l day)) and methane oxidation (up to 2.14 nmol CH₄/(l day)) were revealed. Lightened isotopic composition of suspended organic matter also indicates high activity of the near-bottom microbial community. Compared to the background stations, methane content in pockmark sediments increased sharply from the surface to 40–60 ml/dm³ in the 20–30 cm horizon. High rates of bacterial sulfate reduction (SR) were detected throughout the core (0–40 cm); the maximum of 74 µmol S/(dm³ day) was located in subsurface horizons (15–20 cm). The highest rates of anaerobic methane oxidation (AMO), up to 80 µmol/dm³ day), were detected in the same horizon. Good coincidence of the AMO and SR profiles with stoichiometry close to 1: 1 is evidence in favor of a close relation between these processes performed by a consortium of methanotrophic archaea and sulfate-reducing bacteria. Methane isotopic composition in subsurface sediments of the pockmark (from ?53.0 to ?56.5‰) does not rule out the presence of methane other than the biogenic methane from the deep horizons of the sedimentary cover.     

Dimethylsulfide and methane thiol in sediment porewater of a Danish estuary

Seasonal variation of dimethylsulfide (DMS) and methane thiol (MSH) concentrations in sediment porewater was determined in a Danish estuary. Dimethylsulfide (DMDS) was never found. Detectable DMS levels of up to 0.1 M were found only in the summer and only within the upper 5 cm of the sediment. The DMS accumulation was probably associated with decomposing fragments of macro-algae in the surface layer. Significant MSH accumulation of up to 1 M was found only in the deep, CH₄-rich sediment below the SO₄ ^2- zone. With depth, a detectable MSH level could thus be observed below the 1 mM SO₄ ^2--isopleth which also marked the SO₄ ^2--CH₄ transition. The transition zone was located deeper in the sediment in winter (20–25 cm depth) than in summer (5–10 cm depth). The absence of MSH in the SO₄ ^2- zone could be due to rapid utilization of the compound by SO₄ ^2--reducing bacteria. A possible involvement of MSH in anaerobic CH₄ oxidation at the transition zone is discussed; CH₄ and sulfide (HS^- form, pH 7) are proposed to form MSH and H₂ which in turn may be metabolized by, e.g. SO₄ ^2--reducing bacteria.     

Microbiological Explorations in the Northern Part of the Barents Sea in Early Winter

The total number of microorganisms and rates of microbial processes of the carbon cycle were determined in snow, sea ice, water, and seafloor sediments of the northern part of the Barents Sea from September to October, 1998. The explorations were carried out in two areas: along the transection from Franz Josef Land to Victoria Island and along the continental slope region covered with solid ice at latitude 81°–82° N and longitude 37°–39° E. At the time of study, the ice cover was represented by thick one-year old ice (up to 1.2 m), perennial ice (up to 1.85 m), and pack ice. The number of bacteria in the snow cover, sea ice, and seawater was 12 to 14, 50 to 110, and 10 to 240 × 10³ cells/ml, respectively. Rates of dark CO₂ assimilation, glucose utilization, and methane oxidation by bacteria were determined. The highest rate of microbial processes was found in samples of the lowermost newly formed sea ice. The lowest level of activity for all processes was observed in melted snow water. A direct relation was shown between the concentration of C_org, the bacterial biomass, and the values of ¹³C_org in mixtures of melted snow and ice. The number of microorganisms and rates of microbial processes in seafloor sediments measured at the stations on the continental slope are comparable to those in the central part of the Barents Sea and the northern part of the Kara Sea.     

海洋氮循环过程及基于基因组代谢网络模型的预测

海洋氮循环在地球元素循环中充当着必不可少的角色。海洋氮循环是由一系列氧化还原反应构成的生物化学过程。固氮作用和氮同化作用为生态系统提供了生物可用氮(铵盐)。硝化作用可进一步将铵盐氧化为硝酸盐,硝酸盐又可以通过反硝化作用转化为氮气。整个氮循环实现了海洋中不同含氮无机盐间的转换。微生物是海洋氮循环的重要驱动者,海洋氮循环的研究可以帮助理解海洋生物与地球环境相互作用及协同演化的机制,从而更好地保护地球生态环境。随着氮循环关键微生物基因组尺度代谢网络模型的发表,研究者可以利用代谢网络模型来研究不同氮循环过程的效率、环境因子对氮循环过程的影响以及解析氮循环及生物网络的内在机理等,从而帮助人们更深入地研究海洋氮转化机制。本文主要综述了海洋氮循环过程中各个转化过程的主要微生物,以及基因组尺度代谢网络模型在分析氮循环中的应用。     

Sulfate reduction and S-oxidation in a moorland pool sediment

In an oligotrophic moorland pool in The Netherlands, S cycling near the sediment/water boundary was investigated by measuring (1) SO₄ ^2– reduction rates in the sediment, (2) depletion of SO₄ ^2– in the overlying water column and (3) release of³⁵S from the sediment into the water column. Two locations differing in sediment type (highly organic and sandy) were compared, with respect to reduction rates and depletion of SO₄ ^2– in the overlying water.Sulfate reduction rates in sediments of an oligotrophic moorland pool were estimated by diagenetic modelling and whole core³⁵SO₄ ^2– injection. Rates of SO₄ ^2– consumption in the overlying water were estimated by changes in SO₄ ^2– concentration over time in in situ enclosures. Reduction rates ranged from 0.27–11.2 mmol m^–2 d^–1. Rates of SO₄ ^2– uptake from the enclosed water column varied from –0.5, –0.3 mmol m^–2 d^–1 (November) to 0.43–1.81 mmol m^–2 d^–1 (July, August and April). Maximum rates of oxidation to SO₄ ^2– in July 1990 estimated by combination of SO₄ ^2– reduction rates and rates of in situ SO₄ ^2– uptake in the enclosed water column were 10.3 and 10.5 mmol m^–2 d^–1 at an organic rich and at a sandy site respectively.Experiments with³⁵S^2– and³⁵SO₄ ^2– tracer suggested (1) a rapid formation of organically bound S from dissimilatory reduced SO₄ ^2– and (2) the presence of mainly non SO₄ ^2–-S derived from reduced S transported from the sediment into the overlying water. A³⁵S^2– tracer experiment showed that about 7% of³⁵S^2– injected at 1 cm depth in a sediment core was recovered in the overlying water column.Sulfate reduction rates in sediments with higher volumetric mass fraction of organic matter did not significantly differ from those in sediments with a lower mass fraction of organic matter.Corresponding author     

氨氧化微生物生态学与氮循环研究进展

氮的生物地球化学循环主要由微生物驱动,除固氮作用、硝化作用、反硝化作用和氨化作用外,近年还发现厌氧氨氧化是微生物参与氮循环的一个重要过程.同时,随着宏基因组学等分子生物技术的快速发展和应用,参与氮循环的新的微生物类群--氨氧化古菌也逐渐被发现.这两个重要的发现大大改变了过去人们对氮循环的认识,就近年有关厌氧氨氧化细菌、氨氧化古菌和氨氧化细菌的生态学研究进展作一简要综述.     

Anaerobic Methane Oxidation and Sulfate Reduction in Bacterial Mats on Coral-Like Carbonate Structures in the Black Sea

A detailed study of the processes of anaerobic methane oxidation and sulfate reduction in the bacterial mats occurring on coral-like carbonate structures in the region of methane seeps in the Black Sea, as well as of the phenotypic diversity of sulfate-reducing bacteria developing in this zone, has been performed. The use of the radioisotopic method shows the microbial mat structure to be heterogeneous. The peak activity of the two processes was revealed when a mixture of the upper (dark) and underlying (intensely pink) layers was introduced into an incubation flask, which confirms the suggestion that methanotrophic archaea and sulfate-reducing bacteria closely interact in the process of anaerobic methane oxidation. Direct correlation between the rate of anaerobic methane oxidation and the methane and electron acceptor concentrations in the medium has been experimentally demonstrated. Several enrichment and two pure cultures of sulfate-reducing bacteria have been obtained from the near-bottom water and bacterial mats. Both strains were found to completely oxidize the substrates to CO₂ and H₂S. The bacteria grow at temperatures ranging from −1 to 18 (24)°C, with an optimum in the 10–18°C range, and require the presence of 1.5–2.5% NaCl and 0.07–0.2% MgCl 2⋅6H₂O. Regarding the aggregate of their phenotypic characteristics (cell morphology, spectrum of growth substrates, the capacity for complete oxidation), the microorganisms isolated have no analogues among the psychrophilic sulfate-reducing bacteria already described. The results obtained demonstrate the wide distribution of psychrophilic sulfate-reducing bacteria in the near-bottom water and bacterial mats covering the coral-like carbonate structures occurring in the region of methane seeps in the Black Sea, as well as the considerable catabolic potential of this physiological group of psychrophilic anaerobes in deep-sea habitats__________Translated from Mikrobiologiya, Vol. 74, No. 3, 2005, pp. 420–429.Original Russian Text Copyright © 2005 by Pimenov, Ivanova.     

Metabolically active microbial communities in marine sediment under high-CO2 and low-pH extremes

Sediment-hosting hydrothermal systems in the Okinawa Trough maintain a large amount of liquid, supercritical and hydrate phases of CO₂ in the seabed. The emission of CO₂ may critically impact the geochemical, geophysical and ecological characteristics of the deep-sea sedimentary environment. So far it remains unclear whether microbial communities that have been detected in such high-CO₂ and low-pH habitats are metabolically active, and if so, what the biogeochemical and ecological consequences for the environment are. In this study, RNA-based molecular approaches and radioactive tracer-based respiration rate assays were combined to study the density, diversity and metabolic activity of microbial communities in CO₂-seep sediment at the Yonaguni Knoll IV hydrothermal field of the southern Okinawa Trough. In general, the number of microbes decreased sharply with increasing sediment depth and CO₂ concentration. Phylogenetic analyses of community structure using reverse-transcribed 16S ribosomal RNA showed that the active microbial community became less diverse with increasing sediment depth and CO₂ concentration, indicating that microbial activity and community structure are sensitive to CO₂ venting. Analyses of RNA-based pyrosequences and catalyzed reporter deposition-fluorescence in situ hybridization data revealed that members of the SEEP-SRB2 group within the Deltaproteobacteria and anaerobic methanotrophic archaea (ANME-2a and -2c) were confined to the top seafloor, and active archaea were not detected in deeper sediments (13–30 cm in depth) characterized by high CO₂. Measurement of the potential sulfate reduction rate at pH conditions of 3–9 with and without methane in the headspace indicated that acidophilic sulfate reduction possibly occurs in the presence of methane, even at very low pH of 3. These results suggest that some members of the anaerobic methanotrophs and sulfate reducers can adapt to the CO₂-seep sedimentary environment; however, CO₂ and pH in the deep-sea sediment were found to severely impact the activity and structure of the microbial community.     

Rates and regulation of microbial iron reduction in sediments of the Baltic-North Sea transition

The rates and pathways of anaerobic carbon mineralization processes were investigated at seven stations, ranging from 10 to 56 m water depth, in the Kattegat and Belt Sea, Denmark. Organic carbon mineralization coupled to microbial Mn and Fe reduction was quantified using anaerobic sediment incubation at two stations that were widely separated geographically within the study area. Fe reduction accounted for 75% of the anaerobic carbon oxidation at the station in the northern Kattegat, which is the highest percentage so far reported from subtidal marine sediment. By contrast, sulfate reduction was the dominant anaerobic respiration pathway (95%) at the station in the Great Belt. Dominance of Fe reduction was related to a relatively high sediment Fe content in combination with active reworking of the sediment by infauna. The relative contribution of Fe reduction to anaerobic carbon oxidation at both stations correlated with the concentration of poorly crystalline Fe(III), confirming that the concentration of poorly crystalline Fe(III) exerts a strong control on rates of Fe reduction in marine sediments. The dependence of microbial Fe reduction on concentrations of poorly crystalline Fe(III) was used to quantify the importance of Fe reduction at sites where anaerobic incubations were not applied. This study showed that Fe reduction is an important process in anaerobic carbon oxidation in a wider area of the seafloor in the northern and eastern Kattegat (contribution 60 – 75%). By contrast, Fe reduction is of little significance (6 – 25%) in the more coarse-grained sediments of the shallower western and southern Kattegat, where a low Fe content was an important limiting factor, and in fine-grained sediments of the Belt Sea (4 – 28%), where seasonal oxygen depletion limits the intensity of bioturbation and thereby the availability of Fe(III). A large fraction of the total deposition of organic matter in the Kattegat and Belt Sea occurs in the northern Kattegat, and we estimate 33% of benthic carbon oxidation in the whole area is conveyed by Fe reduction.     

Microbial Processes of the Carbon and Sulfur Cycles in Lake Mogil'noe

In the beginning of the summer of 1999, complex microbiological and biogeochemical investigations of meromictic Lake Mogil'noe (Kil'din Island, Barents Sea) were carried out. The analysis of the results shows a clearly pronounced vertical zonality of the microbial processes occurring in the water column of the lake. To a depth of 8 m, the total number and activity of microorganisms was limited by the relatively low content of organic matter (OM). In the upper part of the hydrogen-sulfide zone of the lake (beginning at a depth of 8.25 m), the content of particulate OM and the microbial number sharply increased. In this zone, the daily production of OM during anaerobic photosynthesis at the expense of massive development of colored sulfur bacteria reached 620 mg C/m², which was twofold greater than the daily production of phytoplankton photosynthesis and led to a considerable change in the isotopic composition (¹³C) of the particulate OM. In the same intermediate layer, the highest rates of sulfate reduction were recorded, and fractionation of stable sulfur isotopes occurred. Below 10 m was the third hydrochemical zone, characterized by maximum concentrations of H₂S and CH₄and by a relatively high rate of autotrophic methanogenesis. The comparison of the results obtained with the results of investigations of previous years, performed in the end of summer, shows a decrease in the intensity of all microbial processes inspected. An exception was anoxygenic photosynthesis, which can utilize not only the de novo formed H₂S but also the H₂S accumulated in the lake during the winter period.     

Sedimentary anaerobic microbial biogeochemistry in the Gulf of Trieste, northern Adriatic Sea: Influences of bottom water oxygen depletion

Sediment samples from two locationsin the Gulf of Trieste (northern Adriatic Sea) werecollected during periods of maximum and minimumtemperatures for two years. Both sites were rich incarbonate material and inhabited by a diverse benthicinfaunal community. However, Site F exhibited adeeper dwelling faunal community, higher content ofcarbonate minerals, and larger grained sediments thanat site MA, which was closer to shore. Depth profilesof sulfate reduction and potential rates of iron andmanganese reduction were determined together withmeasurements of pore water and solid phase chemistry. Bottom waters at all sites were nearly saturated withoxygen for all of the dates sampled except forSeptember 1993 when bottom waters at site F were lessthan 50% saturated. Sulfate reduction rates were ashigh as 400 nmol ml^-1 day^-1 during latesummer and fall when temperatures were >20 °C,while rates during March (8 °C) were <30 nmolml^-1 day^-1. Potential rates of ironreduction, as determined by the accumulation of bothdissolved and acid-soluble reduced iron, were high insurficial sediments at each site except at site F whenbottom waters were partially depleted in oxygen. In the latter instance, sulfate reduction overwhelmedmetal reduction. Although the portion of metalreduction due directly to enzymatic use by bacteriawas not determined, the potential rate data suggestedthat Fe and perhaps Mn reduction were significantcomponents of anaerobic carbon degradation in thesesediments during much of the year. Both sitesappeared to support active metal-reducing bacterialcommunities. However, occasional depletion of oxygenin bottom waters appeared to cause a decrease inirrigation/reworking activity by infauna whichdepressed redox cycling of elements enhancing theimportance of sulfate reduction. A shift from metalreduction to sulfate reduction potentially exacerbatestoxic effects of oxygen depletion on fauna byincreasing the accumulation of toxic sulfide.     

Seasonality of sulfate reduction and pore water solutes in a marine fish farm sediment: the importance of temperature and sedimentary organic matter

Sulfate reduction and pore water solutes related to sulfur cycling and anaerobic processes (short chain fatty acids (SCFA), SO₄ ^2–, TCO₂, NH₄ ⁺, dissolved sulfides (H₂S) and CH₄) were examined during one year at a marine fish farm. Mineralization of fish farm waste products was rapid in this non-bioturbated, organic rich sediment. Stimulation of sulfate reduction rates (SRR) occurred primarily in the surface layers where the organic matter was deposited. Acetate was the most important (<99%) of the measured SCFA attaining high concentrations during summer months (up to 4.7 mM). The acetate profiles exhibited distinct seasonal cycles, where periods with high concentrations in the pore waters were found coincident with a high pool of particulate organic matter in the surface sediments and a low activity of the sulfate reducing bacteria (early spring and late summer). Periods with low acetate pools occurred when sulfate reduction rates were high in early summer and in winter were pools of particulate organic matter were decreasing. Methane production was observed concurrent with sulfate reduction in the microbial active surface layers in late summer. Subsurface peaks of SO₄ ^2–, TCO₂, NH₄ ⁺ and H₂S were evident in July and August due to rapid mineralization in these surface layers. With decreasing autumn water temperatures mineralization rates declined and subsurface peaks of these solutes disappeared. A strong relationship was found between pore water TCO₂, and NH₄ ⁺. Ratios between TCO₂, and NH₄ ⁺ were low compared to a control site, attaining minimum values in mid-summer. This indicated rapid nitrogen mineralization of nitrogen rich labile substrates in the fish farm sediment during the entire season.     

高含氮稻田深层土壤的氨氧化古菌和厌氧氨氧化菌共存及对氮循环影响

随着海洋生态系统中的厌氧氨氧化反应和氨氧化古菌的发现,自然生态系统的氮循环过程被重新认识,但是目前尚无在陆地深层的相关报道。结合同位素示踪与分子生物学技术探索了稻田深层土壤中anammox与AOA的存在及特性。结果表明,在沼渣处理废水浇灌的高含氮稻田深层土壤中,anammox与AOA共存。通过构建克隆文库发现,此土壤中厌氧氨氧化菌的生物多样性相对较低,35个克隆序列只分为4个独立操作单元(OTU),代表序列与Genebank数据库中已探明的厌氧氨氧化菌Candidatus 'Kuenenia stuttgartiensis’的同源性超过95%;对氨氧化古菌的分析发现,20个克隆子共得到5个OTU,其与基因库中土壤/沉积物进化分支关系最近,序列的同源性部分超过98%。同位素示踪的初步结果表明,anammox产生的氮气占此土壤总氮气生成量的24.1%-29.8%。AOA与anammox的共存为anammox反应的广泛存在与发生提供了新思路。     

Sulfur and iron cycling in a coastal sediment: Radiotracer studies and seasonal dynamics

The seasonal variation in sulfate reduction ana the dynamics or sulfur ana iron geochemistry were studied throughout a year in sediment of Aarhus Bay, Denmark. A radiotracer method for measuring sulfate reduction rates was applied with incubation times down to 15 min and a depth resolution down to 2 mm in the oxidized surface layer of the sediment. The radiotracer data were analyzed by a mathematical model which showed that, due to partial, rapid reoxidation of radioactive sulfide during incubation, the actual reduction rates in this layer were probably underestimated 5-fold. In the deeper, sulfidic zone, measured rates appeared to be correct. Sulfate reduction followed the seasonal variation in temperature with maximum activity at 1–2 cm depth in late summer. In spite of its rapid production, free H₂S was detectable in the porewater only below the depth of free Fe²⁺ at 6–7 cm throughout the year. Following the massive sedimentation from a spring phytoplankton bloom, anaerobic degradation of phytoplankton detritus was strongly stimulated over several weeks. A transient reversed redox zonation developed with a thin, black zone on top of the brown, oxidized sediment layer due to intensive sulfate and iron reduction. Mineralization through sulfate reduction was equivalent to two thirds of the annual net sedimentation of organic matter.Author for correspondence     

In situ S‐isotope compositions of sulfate and sulfide from the 3.2 Ga Moodies Group,South Africa: A record of oxidative sulfur cycling

Sulfate minerals are rare in the Archean rock record and largely restricted to the occurrence of barite (BaSO₄). The origin of this barite remains controversially debated. The mass‐independent fractionation of sulfur isotopes in these and other Archean sedimentary rocks suggests that photolysis of volcanic aerosols in an oxygen‐poor atmosphere played an important role in their formation. Here, we report on the multiple sulfur isotopic composition of sedimentary anhydrite in the ca. 3.22 Ga Moodies Group of the Barberton Greenstone Belt, southern Africa. Anhydrite occurs, together with barite and pyrite, in regionally traceable beds that formed in fluvial settings. Variable abundances of barite versus anhydrite reflect changes in sulfate enrichment by evaporitic concentration across orders of magnitude in an arid, nearshore terrestrial environment, periodically replenished by influxes of seawater. The multiple S‐isotope compositions of anhydrite and pyrite are consistent with microbial sulfate reduction. S‐isotope signatures in barite suggest an additional oxidative sulfate source probably derived from continental weathering of sulfide possibly enhanced by microbial sulfur oxidation. Although depositional environments of Moodies sulfate minerals differ strongly from marine barite deposits, their sulfur isotopic composition is similar and most likely reflects a primary isotopic signature. The data indicate that a constant input of small portions of oxidized sulfur from the continents into the ocean may have contributed to the observed long‐term increase in Δ³³S_sulfate values through the Paleoarchean.     

Cycling of inorganic and organic sulfur in peat from Big Run Bog,West Virginia

Total S concentration in the top 35 cm of Big Run Bog peat averaged 9.7 mol·g — wet mass^–1 (123 mol·g dry mass^–1). Of that total, an average of 80.8% was carbon bonded S, 10.4% was ester sulfate S, 4.5% was FeS₂­S, 2.7% was FeS­S, 1.2% was elemental S, and 0.4% was SO₄ ^2–­S. In peat collected in March 1986, injected with³⁵S­SO₄ ^2– and incubated at 4 °C, mean rates of dissimilatory sulfate reduction (formation of H₂S + S⁰ + FeS + FeS₂), carbon bonded S formation, and ester sulfate S formation averaged 3.22, 0.53, and 0.36 nmol·g wet mass^–1·h^–1, respectively. Measured rates of sulfide oxidation were comparable to rates of sulfate reduction. Although dissolved SO₄ ^2– concentrations in Big Run Bog interstitial water (< 200 µM) are low enough to theoretically limit sulfate reducing bacteria, rates of sulfate reduction integrated throughout the top 30–35 cm of peat of 9 and 34 mmol·m^–2·d^–1 (at 4 °C are greater than or comparable to rates in coastal marine sediments. We suggest that sulfate reduction was supported by a rapid turnover of the dissolved SO₄ ^2– pool (average turnover time of 1.1 days). Although over 90% of the total S in Big Run Bog peat was organic S, cycling of S was dominated by fluxes through the inorganic S pools.     

Survival of sulfate-reducing bacteria after oxygen stress, and growth in sulfate-free oxygen-sulfide gradients

Abstract The survival after oxygen stress was studied with eight species of sulfate-reducing bacteria. In the absence of sulfide all species tolerated 6 min of aeration without loss of viability. Even after 3 h of aeration the viability of four species ( Desulfovibrio vulgaris, D. desulfuricans, D. salexigens and Desulfobacter postgatei ) was not impaired. Four other species were sensitive to 3 h of aeration: the surviving fractions of Desulfotomaculum ruminis, D. nigrificans and Desulfococcus multivorans were about 1%, that of Desulfotomaculum orientis about 0.01%. Formation of spores resulted in oxygen resistance of D. orientis . Reducing agents did not protect the vegetative cells of this strain against oxygen toxicity. In contrast, sulfhydryl group-containing agents increased the oxygen sensitivity considerably.
Growth of sulfate- and sulfur-reducing bacteria in oxygen-sulfide gradients in agar tubes was studied. In the gradients these strictly anaerobic bacteria revealed oxygen-dependent growth in sulfate- and sulfur-free medium. Three sulfate-reducing bacteria that could not use thiosulfate or sulfur as electron acceptor failed to grow in oxygen-sulfide gradients. Obviously, not directly molecular oxygen, but oxidation products of sulfide, such as thiosulfate or sulfur, were used as electron acceptors and were continuously regenerated in a cycling process from sulfide by autoxidation. The conceivable ecological significance of a short sulfur cycle driven by autoxidation of sulfide is discussed.     

湖泊氮素氧化及脱氮过程研究进展

自然界中氮的生物地球化学循环主要由微生物驱动,由固氮作用、硝化作用、反硝化作用和氨化作用来完成。过去数十年间,随着异养硝化、厌氧氨氧化和古菌氨氧化作用的发现,人们对环境中氮素循环认识逐步深入,提出了多种脱氮途径新假说。对湖泊生态系统中氮素的输入、输出及其在水体、沉积物和水土界面的迁移转化过程进行了概括,对湖泊生态系统中反硝化和厌氧氨氧化脱氮机理及脱氮效率的最新研究进展进行了探讨,并对以后的氮素循环研究进行了展望。     

Microbial CO Conversions with Applications in Synthesis Gas Purification and Bio-Desulfurization

ABSTRACT

Recent advances in the field of microbial physiology demonstrate that carbon monoxide is a readily used substrate by a wide variety of anaerobic micro-organisms, and may be employed in novel biotechnological processes for production of bulk and fine chemicals or in biological treatment of waste streams. Synthesis gas produced from fossil fuels or biomass is rich in hydrogen and carbon monoxide. Conversion of carbon monoxide to hydrogen allows use of synthesis gas in existing hydrogen utilizing processes and is interesting in view of a transition from hydrogen production from fossil fuels to sustainable (CO₂-neutral) biomass. The conversion of CO with H₂O to CO₂ and H₂ is catalyzed by a rapidly increasing group of micro-organisms. Hydrogen is a preferred electron donor in biotechnological desulfurization of wastewaters and flue gases. Additionally, CO is a good alternative electron donor considering the recent isolation of a CO oxidizing, sulfate reducing bacterium. Here we review CO utilization by various anaerobic micro-organisms and their possible role in biotechnological processes, with a focus on hydrogen production and bio-desulfurization.