Modification of benthic communities by territorial damselfish: a multi-species comparison

The effects of territorial damselfish on coral reef benthos have been well-studied for a few relatively large-bodied species with visually distinct territories. Despite a growing body of research demonstrating their abundance, and their effects on algae, corals and other grazers, there has been little research on the effects of the territorial damselfish community as a whole. This study investigated the space occupation, territory composition, and diet of ten damselfish species at three locations: Magnetic and Orpheus Islands (Great Barrier Reef), and Kimbe Bay (Papua New Guinea). Territories were measured, and the composition of benthic communities inside and outside territories was assessed both in situ and from algal collections. The stomach contents of territorial damselfishes were also quantified. Although the larger, previously well-studied species had the most visible effect on the benthic community in their territories, all the smaller species also significantly affected the algal composition, normally with an increase of palatable algae. However, the composition of algal assemblages inside the territories of different species varied considerably. Damselfish territories were highly individual, not just among species, but also among locations. Diets were diverse and indicated a greater degree of omnivory and detritivory than previously thought. At all locations, territories occupied a substantial proportion of the substratum: >25% on Magnetic Island, >50% at Orpheus Island, and ∼50% in Kimbe Bay. Within individual zones, this figure was as high as 70%. The contribution of territorial damselfishes to a range of benthic patterns and processes is considerable, and future benthic studies may need to distinguish more closely between territory and non-territory areas. Electronic supplementary material The online version of this article (doi:) contains supplementary material, which is available to authorized users.     

Diversity and geographic distribution of benthic foraminifera: a molecular perspective

The diversity and distribution of modern benthic foraminifera has been extensively studied in order to aid the paleoecological interpretation of their fossil record. Traditionally, foraminiferal species are identified based on morphological characters of their organic, agglutinated or calcareous tests. Recently, however, new molecular techniques based on analysis of DNA sequences have been introduced to study the genetic variation in foraminifera. Although the number of species for which DNA sequence data exist is still very limited, it appears that morphology-based studies largely underestimated foraminiferal diversity. Here, we present two examples of the use of DNA sequences to examine the diversity of benthic foraminifera. The first case deals with molecular and morphological variations in the well-known and common calcareous genus Ammonia. The second case presents molecular diversity in the poorly documented group of monothalamous (single-chambered) foraminifera. Both examples perfectly illustrate high cryptic diversity revealed in almost all molecular studies. Molecular results also confirm that the majority of foraminiferal species have a restricted geographic distribution and that globally distributed species are rare. This is in opposition to the theory that biogeography has no impact on the diversity of small-sized eukaryotes. At least in the case of foraminifera, size does not seem to have a main impact on dispersal capacities. However, the factors responsible for the dispersal of foraminiferal species and the extension of their geographic ranges remain largely unknown. Special Issue: Protist diversity and geographic distribution. Guest editor: W. Foissner.     

Making water flow: a comparison of the hydrodynamic characteristics of 12 different benthic biological flumes

Flume tanks are becoming increasingly important research tools in aquatic ecology, to link biological to hydrodynamical processes. There is no such thing as a “standard flume tank”, and no flume tank is suitable for every type of research question. A series of experiments has been carried out to characterise and compare the hydrodynamic characteristics of 12 different flume tanks that are designed specifically for biological research. These facilities are part of the EU network BioFlow. The flumes could be divided into four basic design types: straight, racetrack, annular and field flumes. In each facility, two vertical velocity profiles were measured: one at 0.05 m s⁻¹ and one at 0.25 m s⁻¹. In those flumes equipped with Acoustic Doppler Velocimeters (ADV), time series were also recorded for each velocity at two heights above the bottom: 0.05 m and 20% of the water depth. From these measurements turbulence characteristics, such as TKE and Reynolds stress, were derived, and autocorrelation spectra of the horizontal along-stream velocity component were plotted. The flume measurements were compared to two sets of velocity profiles measured in the field.Despite the fact that some flumes were relatively small, turbulence was fully developed in all channels. Straight and racetrack flumes generally produced boundary layers with a clearly definable logarithmic layer, similar to measurements in the field taken under steady flow conditions. The two annular flumes produced relatively thin boundary layers, presumably due to secondary flows developing in the curved channels. The profiles in the field flumes also differed considerably from the expected log profile. This may either have been due the construction of the flume, or due to unsteady conditions during measurement. Constraints imposed by the different flume designs on the suitability for different types of boundary layer research, as well as scaling issues are discussed.     

Bioassessment of benthic macroinvertebrates in wetlands: a paired comparison of two standardized sampling protocols

Wetlands Ecology and Management - We compared a rapid bioassessment protocol (Traveling Sweep Approach [TSA]) with a more conventional time intensive protocol (Composite Transect Approach [CTA]) to...     

Biogeographic distribution of rudists and benthic foraminifera: An approach to Campanian-Maastrichtian palaeobiogeography of Turkey

Transgressive sequences of Campanian-Maastrichtian Stages in Turkey generally begin with medium- to coarse-grained clastics and continue with shallow marine limestones, reefal limestones and then open marine rhythmic fine-grained clastics. These mixed siliciclastic-carbonate sequences are observed on three main platforms known as Rhodope-Pontide (RPP), Anatolide-Tauride (ATP) and Arabian (AP). New species of the rudist genera Gorjanovicia, Radiolites, Sauvagesia, Durania and Sabinia are observed on the RPP. Yvaniella and Ugarella are only found on this platform. Orbitoides gruenbachensis Papp is the most abundant species of benthic foraminifera on the RPP. Cideina soezerii (Sirel), Dizerina anatolica Meriç, Helicorbitoides boluensis Sirel, Ilgazina unilateralis Erdo?an, Nummofallotia kastamonica Özgen-Erdem, Selimina spinalis ?nan, Sirelina orduensis Meriç and ?nan, Smoutina cruysi Drooger are also observed on this platform. Rudist and benthic foraminifera on the ATP have both high diversity and abundance in comparison with RPP and AP faunas. Genus and species diversity of the rudist fauna is quite high: 17 genera and 36 species are described. New rudist genera such as Darendeella, Kurtinia and Balabania and many new species of Radiolitidae and Hippuritidae may be restricted to this platform. Characteristic larger benthic foraminifera contain 18 genera and 37 species. Among benthic foraminifera Loftusia ketini Meriç, L. turcica Meriç and Av?ar, Postomphalocyclus merici ?nan and Pseudoedomia hekimhanensis Görmü? are also likely restricted to this platform. Rudist diversity on the AP is poor. Four endemic genera (Vautrinia, Dictyoptychus, Paracaprinula and Hatayia) and two species (Hippurites syriaca Vautrin, Pironaea syriaca Vautrin) characterize the fauna on this platform. Loftusia diversity and abundance among the benthic foraminifera is quite high. Arnaudella grossouvreii Douvillé, Discyclina schlumbergeri Munier-Chalmas, Loftusia harrisoni Cox, L. elongata Cox, L. matsumaruii Meriç and Görmü? and Pseudorbitolina marthae Douvillé are only documented from southeastern Anatolia. Biogeographic distributions of rudist and benthic foraminifera show different faunal associations on the three main platforms (RPP, ATP and AP). Our data from both rudist and benthic foraminifera indicate that different faunal associations and existence of restricted genera and species may be associated with a deep marine barrier to circulation during the Campanian-Maastrichtian. Southern and northern branches of the Neotethyan Ocean are considered to be barriers in preventing migration of the species.     

A comparison of live and destructive sampling methods of determining the size of parasitic tick populations

The accuracy of a general and a specific method of collecting and counting ixodid ticks on live hosts was compared with that of a destructive technique which can only be applied to dead animals. Destructive sampling provided considerably more accurate results than either of the live sampling methods when applied to domestic goats (Capra hircus) and a duiker (Sylvicapra grimmia).The smaller the life stage and the tick species the less likely it is that it will be recovered by either of the live sampling techniques. Both live and destructive sampling yielded similar results for adultAmblyomma hebraeum, a large tick.A sub-sampling method, used to estimate larval numbers, was repeatable and an accurate predictor of population size for populations ranging from 50 to 1000 of unengorgedA. hebraeum larvae.     

Geographical variation in species diversity: A comparison of marine polychaetes and nematodes

The aim of this study was to determine if marine species diversity was influenced by geographical location and whether it was higher at lower latitudes. Artificial collectors (made of nylon pan scourers) were employed as a standard substratum for the colonisation of marine invertebrates inhabiting subtidal (12 to 15 m) hard, rocky bottom substrata. These artificial substrate units (ASUs) were deployed at different latitudes including northern and southern temperate (South West England, UK and New Zealand), tropical (Trinidad and Tobago, West Indies) and polar (Signy Island, Antarctica) areas. The polychaetes, representative of the macrofauna and the nematodes, representative of the meiofauna fractions of the total invertebrate fauna collected were analysed.Neither polychaete nor nematode species diversity showed a trend based on latitude and each taxon showed a different pattern of diversity variation in relation to location. Polychaete diversity varied from area to area with highest species diversity occurring in the southern temperate (New Zealand). Nematode species diversity however was similar for the northern and southern temperate (UK and New Zealand) and the tropical area (Trinidad and Tobago). Thus, although the number of locations studied was limited, these data do not conform to a gradient in species diversity with latitude as has been previously supposed. The success of ASUs to compare species diversities in standardised habitat units augurs well for their future use in other ecological areas such as biogeographical or pollution studies.     

Monitoring of marine benthic communities and taxonomic resolution: an approach through diverse habitats and substrates along the Southern Iberian coastline

Studies conducted along the southern Iberian coastline validate macrobenthic community analyses at taxonomic levels higher than that of species. Twelve studies on littoral benthic communities, carried out by the same research team, were selected spanning both a variety of sampling strategies (spatial, temporal, spatio-temporal) and substrate/habitat types (sediment, rock, algae). In order to establish differences between the results obtained at the taxonomic levels of species, family and order, similarities among stations were calculated using Spearman’s coefficient for ranges. A subset of three studies was selected to investigate possible differences in ‘best-explaining’ environmental variables with taxonomic level. The environmental variables selected at species level were the same as those found at levels of family and order. It is concluded that studies at the different levels of taxonomic resolution (species, family, order) lead to similar results both with regard to relative community distributions and the environmental variables associated with these. The importance of this result for monitoring similar benthic communities is discussed.     

Petersen and removal population size estimates: combining methods to adjust and interpret results when assumptions are violated

Synopsis We present ways to test the assumptions of the Petersen and removal methods of population size estimation and ways to adjust the estimates if violations of the assumptions are found. We were motivated by the facts that (1) results of using both methods are commonly reported without any reference to the testing of assumptions, (2) violations of the assumptions are more likely to occur than not to occur in natural populations, and (3) the estimates can be grossly in error if assumptions are violated. We recognize that in many cases two days in the field is the most time fish biologists can spend in obtaining a population estimate, so the use of alternative models of population estimation that require fewer assumptions is precluded. Hence, for biologists operating with these constraints and only these biologists, we describe and recommend a two-day technique that combines aspects of both capture-recapture and removal methods. We indicate how to test: most of the assumptions of both methods and how to adjust the population estimates obtained if violations of the assumptions occur. We also illustrate the use of this combined method with data from a field study. The results of this application further emphasize the importance of testing the assumptions of whatever method is used and making appropriate adjustments to the population size estimates for any violations identified.     

Competition among the pioneers in a seasonal soft-bottom benthic succession: field experiments and analysis of the Gilpin-Ayala competition model

Summary Controlled experiments, designed to assess the effects of pioneers on succession on an intertidal sandflat, provided evidence for interspecific competition between juvenile Hobsonia florida (Polychaeta, Ampharetidae) and oligochaetes. The field data were fitted to both the linear Volterra and non-linear Gilpin-Ayala competition equations. With its greater number of parameters, the Gilpin-Ayala model must provide a better fit to observed population abundances. The Gilpin-Ayala model is flawed as an explanation of the population trajectories of the H. florida and oligochaetes, because its non-linearity parameter affects only intraspecific competion. With either model our field data demonstrate a solution to Hutchinson's paradox. With competition coefficients near unity and similar carrying capacities, the predicted population trajectories are heavily dependent on initial conditions. The predicted times to competitive exclusion are long and can easily exceed the typical period of environmental constancy. Our study offers evidence for Neill's competitive bottleneck: competition acts primarily on the developmental stages of one of a pair of competing species. The permanent meiofauna may act as a competitive bottleneck for the population growth of benthic macrofauna. The mechanism of this competitive interaction probably involves exploitative interspecific competition for benthic diatoms.     

Detecting the effects of physical disturbance on benthic assemblages in a subtropical estuary: A Beyond BACI approach

The effects of dredging on the benthic communities in the Noosa River, a subtropical estuary in SE Queensland, Australia, were examined using a ‘Beyond BACI’ experimental design. Changes in the numbers and types of animals and characteristics of the sediments in response to dredging in the coarse sandy sediments near the mouth of the estuary were compared with those occurring naturally in two control regions. Samples were collected twice before and twice after the dredging operations, at multiple spatial scales, ranging from metres to kilometres. Significant effects from the dredging were detected on the abundance of some polychaetes and bivalves and two measures of diversity (numbers of polychaete families and total taxonomic richness). In addition, the dredging caused a significant increase in the diversity of sediment particle sizes found in the dredged region compared with elsewhere. Community composition in the dredged region was more similar to that in the control regions after dredging than before. Changes in the characteristics of the sedimentary environment as a result of the dredging appeared to lead to the benthic communities of the dredged region becoming more similar to those elsewhere in the estuary, so dredging in this system may have led to the loss or reduction in area of a specific type of habitat in the estuary with implications for overall patterns of biodiversity and ecosystem function.     

Zonation and seasonality of benthic primary production and community respiration in tropical mangrove forests

Benthic oxygen consumption and primary production were measured using the bell jar technique in deltaic and fringing mangrove forests of tropical northeastern Australia. In a deltaic forest, rates of sediment respiration ranged from 197 to 1645 mol O₂ m^–2 h^–1 (mean=836), but did not vary significantly with season or intertidal zone. Gross primary production varied among intertidal zones and seasons, ranging from –281 to 1413 mol O₂ m^–2 h^–1 (mean=258). Upon tidal exposure, rates of gross primary production increased, but respiration rates did not change significantly. In a fringing mangrove forest, benthic respiration and gross primary production exhibited strong seasonality. In both forests, rates of oxygen consumption and production were low compared to salt marshes, but equivalent to rates in other mangrove forests. The production:respiration (P/R) ratio varied greatly over space and time (range:–0.61 to 1.76), but most values were «1 with a mean of 0.15, indicating net heterotrophy. On a bare creek bank and a sandflat, rates of gross primary production and P/R ratios were generally higher than in the adjacent mangroves. Low microalgal standing stocks, low light intensity under the canopy, and differences in gross primary production between mangroves and tidal flats, and with tidal status, indicate that benthic microalgae are light-limited and a minor contributor to primary productivity in these tropical mangrove forests.     

Atlantic paleobathymetry, paleoproductivity and paleocirculation in the late Albian: the benthic foraminiferal record

Spatial distribution patterns of benthic foraminifers in upper Albian sediments from 25 DSDP/ODP sites and 31 onshore sections of the North and South Atlantic Ocean are used to generate paleobathymetric reconstructions and to identify areas of high primary production such as coastal and equatorial upwelling zones. New paleobathymetric estimates are provided for DSDP/ODP sites and onshore locations that are not situated on oceanic crust. Paleobathymetric reconstructions indicate shallow water exchange between the North and South Atlantic but show the existence of a deep-water connection between the western and eastern Tethys (>2500 m) through the Gibraltar Gateway. Strikingly, there is no evidence for a strong latitudinal gradient in deep-water benthic foraminiferal distribution during the late Albian: South Atlantic assemblages show close affinity to North Atlantic and Tethyan assemblages, exhibiting only a minor degree of provincialism. Biogeographic patterns reveal a distinct asymmetry in late Albian paleoproductivity for the North Atlantic. As for the present day, the eastern margins of the Atlantic were generally more productive than the western margins, and a belt of enhanced carbon flux export to the seafloor can be traced around the north African coast, which probably corresponded to a zone of vigorous coastal upwelling. By contrast, assemblage composition in the South Atlantic generally reflects mesotrophic to oligotrophic conditions. Benthic foraminiferal distribution patterns, thus, provide robust proxy data to test predictions from paleocirculation and paleobathymetric models for the mid-Cretaceous Atlantic Ocean and adjacent margins.     

A comparison of three sampling techniques to estimate the population size of caterpillars in trees

Three sampling techniques commonly used to estimate the population size of caterpillars and sawfly larvae in trees (branch samples, frass production, water basins), were compared with respect to sampling error and economic costs. At the level of tree populations (e.g. forests), on an arbitrary date, the mean caterpillar intensity per tree (expressed in numbers of larvae or their biomass per 100 shoots) was predicted from the mean frass production per tree (expressed in mg frass per m² forest floor per day). At the level of the single tree, the frass production on an arbitrary date was related to the population intensity, but, due to the large sampling error, did not provide an accurate prediction. Summing the frass produced over the whole season reduced this error and predicted the seasonal abundance of larvae in single trees, estimated as their maximum intensity or their density (numbers of larvae or their biomass per m² forest floor). The maximum population intensity was not related to the population density. The sampling techniques suffer from large errors unrelated to larval abundance. The main sources of error (i.e. weather or predation of the larvae) usually cause an underestimation of population size. Labour, the main cause of high costs, was low in the basin technique and high in the frass production technique. Possible ways of reducing errors and applications of the three techniques are discussed.     

Use of benthic vs planktonic organic matter by sandy-beach organisms: A food tracing experiment with C labelled diatoms

Benthic diatoms are assumed to be of minor importance as food sources in sandy-beach food webs, since they are typically scarce in sandy-beach sediments; whereas organic matter derived from land and sea is known to be more important in sandy-beach food webs. In order to test if benthic and planktonic diatoms play a minor or major role, respectively, in sandy-beach food webs, a laboratory experiment was conducted. Labelled planktonic and benthic diatoms, enriched in the stable carbon ¹³C isotope, were offered as food sources to sandy-beach macrofauna and meiofauna communities. Uptake of both types of diatoms occurred with most of the species, but benthic diatoms were preferentially consumed by two macrofaunal species and all meiofaunal species. This result reveals the importance of benthic carbon sources in both macrofaunal and interstitial food webs, and suggests a link between both food webs through the common use of benthic diatoms.