Euphausiids (Crustacea: Melacostraca) from the southern Mexican Caribbean Sea

The composition, abundance and distribution of euphausiids from the southern part of the Mexican Caribbean Sea (August 1986) were sampled during the ARCOMM I cruise on board the R/V "Justo Sierra" of UNAM. Sampling was done using a Bongo-net (0.5 mm mesh size) performing oblique hauls from 200 m to the surface at 28 stations. Of the total euphausiid numbers, the most abundant species was Stylocheiron carinatum (49%), followed by Euphausia americana (9.8%) and E. tenera with (7.8%). The highest total density and that of the three most abundant species occurred during the night sampling, and probably was related to vertical migration patterns. The Bray-Curtis index revealed three station assemblages, related to the day-night variations of the euphausiid community. Species were distributed mainly in the oceanic area, and were absent in the neritic zones. The local fauna shows a strong affinity for the euphausiid community of the Gulf of Mexico and other areas of the Caribbean Sea. Four species are considered to be new records for the western Caribbean Sea.     

Discovery of a ciliate parasitoid of euphausiids off Oregon, USA: Collinia oregonensis n. sp. (Apostomatida: Colliniidae)

An apostome ciliate, Collinia oregonensis n. sp., is reported inhabiting the cephalothorax and abdomen of 3 euphausiid species from the Oregon-Washington coast: Euphausia pacifica Hansen, 1911, Thysanoessa spinifera Holmes, 1900, and Thysanoessa gregaria G.O. Sars, 1883. This ciliate is the 7th species described for the genus Collinia and the 2nd species known to infect euphausiids. Disease progression and ciliate morphology are described using (1) modified protargol stain, (2) hematoxylin counterstained with Fast Green, and (3) Scanning Electron Microscopy (SEM). All endoparasitic developmental stages (trophont, tomont, tomitogenesis, protomite, and tomite) of C. oregonensis are astomatous and possess between 14 and 22 kineties. C. oregonensis is smaller than C. beringensis Capriulo & Small, 1986, which infects the euphausiid Thysanoessa inermis Kr?yer, 1846 in the Bering Sea and which possesses between 24 and 80 kineties. The ciliate is a parasitoid because it must kill the host to complete its life cycle. Infections and mortalities in multiple host species likely reflect the virulent nature of the ciliate. Adult euphausiids infected with this parasitoid possess a swollen and bright orange cephalothorax. C. oregonensis feeds and proliferates inside euphausiids, producing fulminating infections that rupture the cephalothorax and release large numbers of tomites into the surrounding water. After several hours in the free swimming stage under shipboard conditions in the present study, the tomites adhered to each other, forming filaments. Infection rates ranged between 3 and 20% within individual euphausiid aggregations, but infected aggregations were randomly and sparingly distributed. Infected euphausiids were found at 6.7% of 316 stations sampled during 3 summer cruises. No infected euphausiids were collected in winter. Because E. pacifica and T. spinifera account for about 90% of the euphausiid standing stock in the northern California Current System, this parasitoid ciliate may have a significant impact on euphausiid population abundance, distribution and secondary productivity.     

Partial characterization of chitin degrading enzymes from two euphausiids,Euphausia superba and Meganyctiphanes norvegica

Summary Chitinase and N-acetyl--D-glucosaminidase have been demonstrated in Meganyctiphanes norvegica and in Euphausia superba and partly characterized. The enzymes from both species have broad pH-optima (maxima around pH 5.0) and temperature optima between 40 and 50°C. The enzymes are relatively stable; even at about 45°C half of the enzyme activity is retained after 30 min incubation. The presence of fluoride does not affeet enzymatic activity. Chitinase activity appears in three different molecular masses, N-acetyl--D-glucosaminidases in two different forms. pH and temperature optima, thermal stability and kinetic properties of the two enzymes are strikingly similar in the polar E. superba versus the boreal euphausiid M. norvegica. Enzyme activity in the lower temperature range is still high, whereas activation energies are low in both euphausiids. This suggests a functional adaptation to a low temperature range in seawater.     

Distribution of euphausiids in the Kuroshio front and warm water tongue with special reference to the surface aggregation of Euphausia pacifica

The distribution of euphausiids and other macrozooplankton wasinvestigated in and around the Kuroshio front formed in theKa.shima-nada Sea. Japan. during the summer of 1993. Zooplanktonwere dominated by copepods, chaetognaths and euphausiids. andtheir biomass was significantly higher at the frontal stations.Eighteen species belonging to six genera of euphausiids werecollected. The species composition and community structure ofeuphausiids changed drastically with the ‘areas’corresponding to the hydrological conditions. In the area underthe influence of the Kuroshio. most euphausiids were warm-waterspecies. In contrast. euphausiids found in the frontal areawere those usually predominating in subarctic or cold Oyashiowaters. In the area of the warm water tongue. where warm Kuroshiowater lay above cold Oyashio water, the species compositionof euphausiids represented a mixture of both warm- and cold-waterspecies. Surface aggregations of Euphausia pacifica were observedin the frontal area during the night. The biomass and densityof the aggregations ranged between 90 and 136 mg C m^–3and 164 and 238 md. m^–3 respectively. These aggregationswere mostly made up of immature individuals of < 12 mm. Passivetransportation by convergent flow at the front seems to explainthe observed surface aggregations of E.pacifica.     

DNA barcoding of freshwater zooplankton in Lake Kasumigaura,Japan

Although DNA barcoding is a promising tool for the identification of organisms, it requires the development of a specific reference sequence library for sample application. In the present study we developed a Lake Kasumigaura, Japan, zooplankton DNA barcode library to increase the sensitivity of future zooplankton monitoring for detecting lake ecosystem condition changes. Specifically, the mitochondrial cytochrome c oxidase subunit I (mtCOI) haplotype, i.e., the primary DNA barcode, was examined for each zooplankton taxon. In crustaceans, 37 mtCOI haplotypes were obtained from 99 individuals, representing four and 15 morpho-species of Copepoda and Cladocera, respectively. Comparing these sequences with those in GenBank shows that the lake harbors putative non-indigenous species, such as Daphnia ambigua. In rotifers, 132 mtCOI haplotypes were obtained from 302 individuals, representing 11 genera and one unclassified taxon. The automatic barcode gap discovery (ABGD) algorithm separated these haplotypes into 43 species. Brachionus cf. calyciflorus was divided into five ABGD species, and different ABGD species tended to occur in different seasons. Seasonal ABGD-species succession was also observed within Polyarthra spp. and Synchaeta spp. These seasonal successions were not detected by inspections of external morphology alone. Accepting up to 7% sequence divergence within the same species, mtCOI reference sequences were available in GenBank for three, 13, and 17 species in Copepoda, Cladocera, and Rotifera, respectively. The present results, therefore, reveal the serious shortage of mtCOI reference sequences for rotifers, and underscore the urgency of developing rotifer mtCOI barcode libraries on a global scale.     

DNA Barcoding for Identification of Sugarcane Borers in China

Sugarcane borers are economically damaging insects with species that vary in distribution patterns both geographically and temporally, and vary based on ecological niche. Currently, identification of sugarcane borers is mostly based on morphological characters. However, morphological identification requires taxonomic expertise. An alternative method to identify sugarcane borers is the use of molecular data. DNA barcoding based on partial cytochrome c oxidase subunit 1 (COI) sequences has proven to be a useful tool for rapid and accurate species determination in many insect taxa. This study was conducted to test the effectiveness of DNA barcodes to discriminate among sugarcane borer species in China. Partial sequences of the COI gene (709 bp) were obtained from six species collected from different geographic areas. Results showed that the pairwise intraspecies genetic distance was < 0.02, whereas the interspecies genetic distance ranged from 0.117 to 0.182. Results from a neighbor-joining tree showed that the six sugarcane borer species were certainly separated. These results suggested that the partial COI sequences had high barcoding resolution in discriminating among sugarcane borer species. Our study emphasized the use of DNA barcodes for identification of the analyzed sugarcane borer species and represents an important step for building a comprehensive barcode library for sugarcane borers in China.     

A REASSESSMENT OF SPECIES BOUNDARIES IN CYSTOSEIRA AND HALIDRYS (PHAEOPHYCEAE,FUCALES) ALONG THE NORTH AMERICAN WEST COAST1

Application of phylogenetic species recognition to morphologically recognized species in the genera Cystoseira Agardh and Halidrys Lyngbye on North American west coasts revealed little genetic variation despite a remarkable degree of morphological variation currently used to recognize and delineate species. Whereas morphological characteristics allow recognition of two genera, four morphological species and three informal forms, maximum genetic variation among them was similar to that characteristic of the intraspecific level in European congeners and other Fucales. Among morphological species and forms, nucleotide variation in a combined 26S (large subunit (LSU)) and internal transcribed spacer (ITS) ribosomal DNA analysis was below 3% while it was 1% or less for the RUBISCO spacer of the chloroplast DNA. Comparison of the LSU data to available data for European congeners showed that the genera Cystoseira and Halidrys are not monophyletic and that the previously recognized Cystoseiraceae should be included within the family Sargassaceae. These observations suggest that the current taxonomy for the Sargassaceae fails to reflect evolutionary history because Atlantic and Pacific Cystoseira and Halidrys appear to have arrived at similar morphologies independently. Our results indicate a comparatively recent establishment on the west coast of North America of a sargassacean progenitor whose descendant taxa have experienced limited genetic divergence and are characterized by a high capacity for phenotypic variation despite their overall genetic similarity.     

Authentication of five <Emphasis Type="Italic">Barilius</Emphasis> species from Indian waters using DNA barcoding

Authentic identification of fish species is essential for conserving them as a valuable genetic resource in our environment. DNA barcoding of living beings has become an important and ultimate tool for establishing their molecular identity. Among cyprinids, Barilius is an important genus having nearly 23 species in Indian region whose morphological identification is often difficult due to minute differences in their features. Five species collected from Indian waters and primarily identified as Opsarius bakeri (syn. Barilius bakeri), B. gatensis, B. vagra, B. bendelisis and B. ngawa were authenticated by their DNA barcoding based on mitochondrial COI gene sequences. Five individuals of each species were taken for barcode preparation by COI gene sequencing which yielded one barcode for B. ngawa, two barcodes each for O. bakeri, B. gatensis, B. bendelisis and three barcodes for B. vagra. The order of inter and intra-specific variation was estimated to know a preliminary status of variation prevailing in these cold stream fish species significant for evolution and conservation of these valued species of our ichthyofauna. Average variation within genera was found to be 13.6% with intra-specific variation ranging from 0.0% (B. ngawa) to 0.6% (B. gatensis). These distance data are in the same order found by various researchers globally using COI barcode sequences in different fish species. Phylogenetic relatedness among Barilius species and some other cyprinids validate their status of individual species as established by conventional taxonomy.     

Detection of anchoveta (Engraulis ringens Jenyns 1842) eggs in euphausiid diets using immunoassays (ELISA)

Employing the production of a polyclonal antibody and the use of indirect enzyme linked immuno sorbent assay (ELISA), we detect Engraulis ringens egg proteins in the guts of a natural predator Euphausia mucronata Sars 1883 in Chilean waters. With a dilution of 1:15,000, the immune serum allowed the detection of 0.1 μg of anchoveta egg protein. The immune serum showed low cross-reactions with eggs and larval proteins of other pelagic fishes. Laboratory feeding experiments showed a window of detection of the protein of 9 h (13 °C) in the digestive tract of E. mucronata. In field-collected euphausiids within the spawning area of the anchoveta in Northern Chile, we detected anchovy egg proteins in 18% of 155 euphausiids tested by ELISA. These results constitute the first field evidence of predation by the highly abundant euphausiid E. mucronata on the early life stages of the anchoveta E. ringens in the Humboldt Current.     

Phylogenetic relationships and taxonomy of <Emphasis Type="Italic">Luciobarbus barbulus</Emphasis> (Heckel, 1847) (Teleostei: Cyprinidae)

Luciobarbus barbulus (Heckel, 1847), a cyprinid fish of the Persian Gulf basin is re-described. Its identity is discussed and its phylogenetic relationship among the tribe Barbini is reconstructed. Luciobarbus barbulus can be distinguished from its close species, L. pectoralis by having thicker lower lip, stronger last unbranched dorsal fin ray and with stronger serration, longer barbels and posterior barbel passes the middle of the eye (vs. not reaching the middle of the eye in L. pectoralis), confirming the identity of both, as distinct species. Moreover, phylogenetic analysis based on the mtCOI sequences, placed the sequenced L. barbulus in a distinct clade corresponding to the tribe Barbini which includes Aulopyge, Barbus and Luciobarbus (three genera from Eurasia and North of Africa), sister to L. pectoralis from Orontes River with genetic distance of 1.7% applying the Kimura 2 Parameter (K2P) model.     

ADAPTIVE RADIATION AND GENETIC DIFFERENTIATION IN THE HAWAIIAN SILVERSWORD ALLIANCE (COMPOSITAE: MADIINAE)

The Hawaiian silversword alliance consists of the three genera Dubautia, Argyroxiphium, and Wilkesia, and is a classic example of adaptive radiation in an insular setting. Genetic variation and interspecific genetic differentiation based on ten enzyme loci are described for Dubautia and Wilkesia. Genetic identities among species span the range of values expected from interpopulation comparisons within a single species (I = 0.90–1.00) to those typical of interspecific comparisons . Genetic-identity values correspond to biogeographic distribution and morphological distinctiveness, supporting a correlation of increasing genetic distance associated with the time of separation among lineages. It may be inferred that the high genetic identities observed within the Hawaiian Madiinae and other island plant groups are due to limited time spans available for taxa to accumulate new genetic variation through mutation. It appears that species may remain genetically similar (I > 0.90) even after time spans on the order of magnitude of 1,000,000 years.     

Efficacy of using DNA barcoding to identify parasitoid wasps of the melon-cotton aphid (<Emphasis Type="Italic">Aphis gossypii</Emphasis>) in watermelon cropping system

Parasitoid wasps have received a great deal of attention in the biological control of melon-cotton aphid (Aphis gossypii Glover). The species of parasitoids are often difficult to identify because of their small body size and profound diversity. DNA barcoding offers scientists who are not expert taxonomists a powerful tool to render their field studies more accurate. Using DNA barcodes to identify aphid parasitoid wasps in specific cropping systems may provide valuable information for biological control. Here, we report the use of DNA barcoding to confirm the morphological identification of 14 species (belonging to 13 genera of 7 families) of parasitoid wasps from two-year field samples in a watermelon cropping system. We generated DNA sequences from the mitochondrial COI gene and the nuclear D2 region of 28S rDNA to assess the genetic variation within and between parasitoid species. Automatic Barcode Gap Discovery (ABGD) supported the presence of 14 genetically distinct groups in the dataset. Among the COI sequences, we found no overlap between the maximum K2P distance within species (0.49%) and minimum distance between species (6.85%). The 28S sequences also showed greater interspecific distance than intraspecific distance. DNA barcoding confirmed the morphological identification. However, inconsistency and ambiguity of taxonomic information available in the online databases has limited the successful use of DNA barcoding. Only five species matched those in the BOLD and GenBank. Four species did not match the entries in GenBank and five species showed ambiguous results in BOLD due to confusing nomenclature. We suggested that species identification based on DNA barcodes should be performed using both COI and other genes. Nonetheless, we demonstrate the potential of the DNA barcoding approach to confirm field identifications and to provide a foundation for studies aimed at improving the understanding of the biocontrol services provided by parasitoids in the melon ecosystem.     

Morphological comparison and DNA barcoding of four closely related species in the genera Misgurnus and Paramisgurnus (Cypriniformes: Cobitidae)

To evaluate the feasibility of morphological and genetic identification of the closely related species in the genera Misgurnus and Paramisgurnus, the morphological characters of four species in these genera and DNA barcoding of five loaches (P. dabryanus, M. anguillicaudatus, M. bipartitus, M. mohoity, and Barbatula toni) were investigated. Twelve morphological characters were measured in 542 individuals to perform the comparative analysis. Among these characters, only the caudal peduncle length (L_CP) revealed significant difference (P < 0.05) among these four species. The clustering based on morphological characters formed two clusters (P. dabryanus and M. anguillicaudatus; M. bipartitus and M. mohoity). A total of 186 COI fragments for the five loaches investigated were sequenced and analyzed. The results showed that interspecific K2P distance was much higher than intraspecific distance within the five species. Bayesian inference of phylogeny showed that individuals of these species were divided into five specific clades. Meanwhile, the COI fragments exhibited 22 character attributes for the differentiation of the five loach species based on character-based method. Our results suggested that DNA barcoding based on COI can be used as an efficient identifier of these five loach species; the combination of distance-based method, Bayesian inference and character-based approach provides higher resolution of identification at species level.     

Untersuchungen zur Zoogeographie der Euphausiaceen (Crustacea) des Roten Meeres

A joint programme on “Biota of the Red Sea and the Eastern Mediterranean” has been carried out by the Hebrew University of Jerusalem and the Smithsonian Institution of Washington between 1967 and 1972 in order to study the role played by the Suez Canal as a route for faunal exchanges between the Red Sea and Eastern Mediterranean. The euphausiids of this material have been examined and additional samples of zooplankton have been taken in the Gulf of Elat (Aqaba) in 1973 in order to study the vertical distribution of the euphausiids. Four species have been found to occur in the Northern Red Sea and the Gulf of Elat:Euphausia diomedeae, E. sanzoi, Stylocheiron affine andS. abbreviatum. Seven species were found in the Eastern Mediterranean of whichEuphausia brevis is the dominant species. The present studies revealed that an exchange of Euphausiacea through the Suez Canal does not take place. The species of the Red Sea belong to the Indopacific fauna. Despite the particular historic-geographical and ecological situation of the Red Sea, no endemisms or subspecies have evolved there within the Euphausiacea.     

Distribution and abundance of euphausiids and pelagic amphipods in Kongsfjorden,Isfjorden and Rijpfjorden (Svalbard) and changes in their relative importance as key prey in a warming marine ecosystem

Euphausiid (krill) and amphipod dynamics were studied during 2006–2011 by use of plankton nets in Kongsfjorden (79°N) and adjacent waters, also including limited sampling in Isfjorden (78°N) and Rijpfjorden (80°N). The objectives of the study were to assess how variations in physical characteristics across fjord systems affect the distribution and abundance of euphausiids and amphipods and the potential for these macrozooplankton species to reproduce in these waters. The abundances of euphausiids and amphipods were higher in Kongsfjorden than in Rijpfjorden and Isfjorden, and the highest abundances were observed at the innermost stations of Kongsfjorden, where Thysanoessa inermis and Themisto libellula dominated. The Atlantic species Thysanoessa longicaudata, Meganyctiphanes norvegica and Themisto abyssorum dominated at the outside Kongsfjorden. Inter-annual and seasonal variability in abundances of euphausiids and amphipods were evident. The presence of ripe euphausiids outside Kongsfjorden indicates that they may reproduce in these areas. Mature individuals of T. abyssorum were recorded mainly outside Kongsfjorden, whereas no mature or ripe T. libellula were present in both the inner and outer parts of this fjord. If the warming trend persists, as seen during the last decade, this would favour the Atlantic/boreal euphausiid species, while Arctic species, such as the amphipod T. libellula, may decline. Euphausiids and amphipods are major food of capelin (Mallotus villosus) and polar cod (Boreogadus saida), respectively, in this region, and changes in prey abundance will likely have an impact on the feeding dynamics of these important fish species.     

Pseudocollinia brintoni gen. nov., sp. nov. (Apostomatida: Colliniidae), a parasitoid ciliate infecting the euphausiid Nyctiphanes simplex

A novel parasitoid ciliate, Pseudocollinia brintoni gen. nov., sp. nov. was discovered infecting the subtropical sac-spawning euphausiid Nyctiphanes simplex off both coasts of the Baja California peninsula, Mexico. We used microscopic, and genetic information to describe this species throughout most of its life cycle. Pseudocollinia is distinguished from other Colliniidae genera because it exclusively infects euphausiids, has a polymorphic life cycle, and has a small cone-shaped oral cavity whose left wall has a field of ciliated kinetosomes and whose opening is surrounded on the left and right by 2 'oral' kineties (or ciliary rows) that terminate at its anterior border. Two related species that infect different euphausiid species from higher latitudes in the northeastern Pacific Ocean, Collinia beringensis Capriulo and Small, 1986, briefly redescribed herein, and Collinia oregonensis Gómez-Gutiérrez, Peterson, and Morado, 2006, are transferred to the genus Pseudocollinia. P. brintoni has between 12 and 18 somatic kineties, and its oral cavity has only 2 oral kineties, while P. beringensis comb. nov. has more somatic kineties, including 3 oral kineties. P. oregonensis comb. nov. has an intermediate number of somatic kineties. P. beringensis comb. nov. also infects Thysanoessa raschi (a new host species). SSU rRNA and cox1 gene sequences demonstrated that Pseudocollinia ciliates are apostome ciliates and that P. brintoni is different from P. beringensis comb. nov. High densities of rod-shaped bacteria (1.7 μm length, 0.2 to 0.5 μm diameter) were associated with P. brintoni. After euphausiid rupture, high concentrations of P. brintoni and bacteria cluster to form 3 to 6 cm long filaments where tomites encyst and transform to the phoront stage; this is a novel place for encystation. P. brintoni may complete its life cycle when the euphausiids feed on these filaments.     

Specific Composition and Distribution of Euphausiids in the Zone of the North Atlantic Subtropical Convergence

The euphausiid community was studied between the surface and upper bathypelagics northeast of the Azores Islands (46°–37° N, 14°–29° W) during the hydrological summer (August to September) of 1984 using a midwater trawl. In total, 11 species of euphausiids were identified. The two most common species, Meganyctiphanes norvegica and Thysanopoda acutifrons, were found in 43.8 and 40.8% of the samples, respectively. In terms of biomass, M. norvegica dominated the catches, its densities reaching up to 160 kg per trawling hour. The region is dominated by North Atlantic arctic–boreal and boreal species, followed by pan-oceanic meso- and bathypelagic, as well as tropical–subtropical and widespread tropical euphausiid species. The study area, which is situated in the zone of the Atlantic subtropical convergence, is subjected to seasonal migrations of the Subpolar Frontal system. Owing to this, a quasi-stationary ecotone is established, where arctic–boreal species are spatially replaced first by tropical–subtropical and then by widespread tropical elements. There are grounds to believe that the quasi-stationary ecotone lasts both for many years and from season to season. In the latter case, seasonal succession of species takes place, but the ecological structure of the ecotone remains almost constant.     

利用mtCOI PCR-RFLP技术鉴别草地贪夜蛾与其他3种形态相近昆虫

【目的】田间调查发现草地贪夜蛾与甜菜夜蛾、斜纹夜蛾、粘虫常混合发生,传统的形态学鉴定方法不能快速鉴别出该虫,当前亟需快速鉴别该虫的方法。【方法】本研究分析了草地贪夜蛾与甜菜夜蛾、斜纹夜蛾、粘虫mtCOI基因序列的酶切位点,根据目的片段设计上游引物并进行PCR-RFLP验证。【结果】草地贪夜蛾个体在mtCOI片段的556~561 bp处均存在Sbf I内切酶酶切位点,斜纹夜蛾、甜菜夜蛾、粘虫均无Sbf I酶切位点。草地贪夜蛾PCR产物经过Sbf I内切酶酶切,可出现420 bp左右的特征带,斜纹夜蛾、甜菜夜蛾、粘虫种群均不能被Sbf I内切酶酶切。【结论】基于新设计引物扩增的mtCOI片段的PCR-RFLP方法可有效鉴别草地贪夜蛾与其他3个形态相近昆虫,研究结果为草地贪夜蛾的快速鉴别提供了方法。