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1.
Twelve previously undescribed serotypes ofArizona isolated from zoo animals were characterized. They were 10a, 10b : 13(14) : 28a, 28b, 28d; 9a, 9c : 33 : 28a, 28b; 1,4 : 24 : 21; 1,4 : 29 : 31; 19 : 22 : 28a, 28b; 7a, 7c : 27 : 31 : 38; 26 : 33 : 28a, 28b; 9a, 9b : 29 : 21; 23 : 33 : 28a, 28b; 7a, 7b : 22 : 34; 5 : 1,6; and 23 : 33 : 28a, 28b : 42.  相似文献   

2.
Naimy H  Leymarie N  Bowman MJ  Zaia J 《Biochemistry》2008,47(10):3155-3161
Heparan sulfate (HS) is a sulfated glycosaminoglycan attached to a core protein on the cell surface. Protein binding to cell surface HS is a key regulatory event for many cellular processes such as blood coagulation, cell proliferation, and migration. The concept whereby protein binding to HS is not random but requires a limited number of sulfation patterns is becoming clear. Here we describe a hydrophobic trapping assay for screening a library of heparin hexasaccharides for binders to antithrombin III (ATIII). The hexasaccharide compositions are defined with their building block content in the following format: (DeltaHexA:HexA:GlcN:SO 3:Ac). Of five initial compositions present in the library, (1:2:3:6:1), (1:2:3:7:1), (1:2:3:7:0), (1:2:3:8:0), and (1:2:3:9:0), only two are shown to bind ATIII, namely, (1:2:3:8:0) and (1:2:3:9:0). The use of amide hydrophilic interaction (HILIC) liquid chromatography-mass spectrometry permitted reproducible quantitative analysis of the composition of the initial library as well as that of the binding fraction. The specificity of the hexasaccharides binding ATIII was confirmed by assaying their ability to enhance ATIII-mediated inhibition of Factor Xa in vitro.  相似文献   

3.
A mother can influence a trait in her offspring both by the genes she transmits (Mendelian inheritance) and by maternal attributes that directly affect that trait in her offspring (maternal inheritance). Maternal inheritance can alter the direction, rate, and duration of adaptive evolution from standard Mendelian models and its impact on adaptive evolution is virtually unexplored in natural populations. In a hierarchical quantitative genetic analysis to determine the magnitude and structure of maternal inheritance in the winter annual plant, Collinsia verna, I consider three potential models of inheritance. These range from a standard Mendelian model estimating only direct (i.e., Mendelian) additive and environmental variance components to a maternal inheritance model estimating six additive and environmental variance components: direct additive and environmental variances; maternal additive and environmental variances; and the direct-maternal additive () and environmental covariances. The structure of maternal inheritance differs among the 10 traits considered at four stages in the life cycle. Early in the life cycle, seed weight and embryo weight display substantial , a negative , and a positive . Subsequently, cotyledon diameter displays and of roughly the same magnitude and negative . For fall rosettes, leaf number and length are best described by a Mendelian model. In the spring, leaf length displays maternal inheritance with significant and and a negative . All maternally inherited traits show significant negative . Predicted response to selection under maternal inheritance depends on and as well as . Negative results in predicted responses in the opposite direction to selection for seed weight and embryo weight and predicted responses near zero for all subsequent maternally inherited traits. Maternal inheritance persists through the life cycle of this annual plant for a number of size-related traits and will alter the direction and rate of evolutionary response in this population.  相似文献   

4.
Composition of fatty acids in Boekelovia hooglandii Nicolai et Baas Becking (Chrysophyceae) was investigated as a function of salinity. It was confirmed by gas chromatography that the composition of fatty acids in cells cultured in a 50 mmol L?1 NaCl medium consisted of C14:0, C15:0, C16:0, C16:1, C18:0, C18:1, C18:2, C18:3, C18:4, C20:0, C20:4, C20:5, C22:5 and C22:6, in which C14:0, C16:0, C16:1, C18:4, C20:0, C20:5, C22:5 and C22:6 were main constituents. When the cells were cultured in a medium with different concentrations of NaCl ranging from 50 to 800 mmol L?1, the mole percentage of fatty acids such as C14:0, C16:0 and C16:1 decreased with increases in the salinity, while the mole percentage of highly polyunsaturated fatty acids such as C18:4, C20:5, C22:5 and C22:6 increased. When the cells were transferred from a 200 mmol L?1 NaCl medium to a 600 mmol L?1 NaCl medium, a decrease in mole percentage of C14:0, C16:0 and C16:1, and an increase in C18:4, C20:5, C22:5 and C22:6 were observed within 4 h. However, no change in the compositions of fatty acids was observed within 4 h when the cells were transferred from a 600 mmol L?1 NaCl medium to a 200 mmol L?1 NaCl one. The increase in the content of highly polyunsaturated fatty acids was considered to reflect the rapid response to upshock and to be the characteristic of salt tolerance in B. hooglandii.  相似文献   

5.
Recent developments in insect gerontological and nutritional research have suggested that the dietary protein:carbohydrate (P:C) balance is a critical determinant of lifespan and reproduction in many insects. However, most studies investigating this important role of dietary P:C balance have been conducted using dipteran and orthopteran species. In this study, we used the mealworm beetles, Tenebrio molitor L. (Coleoptera: Tenebrionidae), to test the effects of dietary P:C balance on lifespan and reproduction. Regardless of their reproductive status, both male and female beetles had the shortest lifespan at the protein-biased ratio of P:C 5:1. Mean lifespan was the longest at P:C 1:1 for males and at both P:C 1:1 and 1:5 for females. Mating significantly curtailed the lifespan of both males and females, indicating the survival cost of mating. Age-specific egg laying was significantly higher at P:C 1:1 than at the two imbalanced P:C ratios (1:5 or 5:1) at any given age throughout their lives, resulting in the highest lifetime reproductive success at P:C 1:1. When given a choice, beetles actively regulated their intake of protein and carbohydrate to a slightly carbohydrate-biased ratio (P:C 1:1.54–1:1.64 for males and P:C 1:1.3–1:1.36 for females). The self-selected P:C ratio was significantly higher for females than males, reflecting a higher protein requirement for egg production. Collectively, our results add to a growing body of evidence suggesting the key role played by dietary macronutrient balance in shaping lifespan and reproduction in insects.  相似文献   

6.
Polychlorinated biphenyls in a commercial mixture (Aroclor 1242) were added to soil at 8.0 mg kg−1 with and without ryegrass ( Lolium multiflorum L.) planted in a specially designed rhizobox. At the end of 90 days, the presence of plants significantly increased Aroclor 1242 degradation compared with soils without ryegrass. Phospholipid fatty acids (PLFAs) profiles were affected by the distance from the rhizosphere, indicating a distance-dependent selective enrichment of competent species that may be responsible for efficient Aroclor 1242 degradation. The highest concentration of total PLFAs also occurred at 3 mm from the root zone in planted soils. The numbers of bacteria (cy17:0, 16:0), gram-positive bacteria (a15:0, i16:1, a17:0) and actinomycete (18:2ω6,9c) were significantly higher in planted soils than in unplanted soils. Furthermore, individual PLFAs [i16:0, 16:0 N alcohol, 18:0(10Me), i16:1, a15:0, i14:1, 14:0 2OH, 18:1ω9c, a17:0, 14:0 3OH, i14:0, a16:0, 16:1ω5c] were strongly correlated with the Aroclor 1242 degradation rates (%) ( P <0.05) in planted treatments, whereas individual PLFAs of i16:1, 12:0 3OH, 15:0, a15:0 had significant correlations with the Aroclor 1242 degradation rates (%) ( P <0.05) in unplanted soils. In particular, individual PLFAs i16:1 had strong correlations with Aroclor 1242 degradation in treatments both with and without ryegrass.  相似文献   

7.
Mitophagy is a main type of selective autophagy, via which damaged mitochondria are selectively degraded via the autophagic pathway. The protein kinase PINK1 and E3 ubiquitin ligase PRKN are the most well studied regulators of mitophagy, via a feedforward mechanism involving ubiquitin phosphorylation (p-Ser65-Ub) and accumulation at the damaged mitochondria. However, it is unknown whether there is a protein phosphatase against PINK1-mediated phosphorylation of ubiquitin. We recently reported that PTEN-L, a newly identified PTEN isoform, is a novel negative regulator of mitophagy through dephosphorylation of p-Ser65-Ub. Our data demonstrate that a significant portion of PTEN-L localizes at the outer mitochondrial membrane and is able to prevent PRKN’s mitochondrial translocation, reduce the phosphorylation of PRKN, impair its E3 ligase activity as well as maintain PRKN in a closed/inactive status. Moreover, we found that PTEN-L dephosphorylates p-Ser65-Ub to disrupt the feedforward mechanism of mitophagy. Our findings suggest that PTEN-L acts as a brake in the regulation of mitophagy.

Abbreviations: ATR: alternatively translated region; CCCP: carbonylcyanide 3-chlorophenylhydrazone; DUBs: deubiquitinating enzymes; MFN2: mitofusion2; MS/MS: tandem mass spectrometry; mtDNA: mitochondrial DNA; MTS: mitochondrial targeting sequences; O/A: oligomycin and antimycin A; PINK1: PTEN induced putative kinase 1; PRKN/parkin: parkin RBR E3 ubiquitin protein ligase; PTEN: phosphatase and tensin homolog; PTEN-L: phosphatase and tensin homolog-long; Ub: ubiquitin; USP: ubiquitin-specific proteases; YFP: yellow fluorescence protein.  相似文献   


8.
In the present paper, we review the fossil record of the Hydrometridae (Hemiptera, Gerromorpha) and present a new species from the Early Cretaceous Crato Formation of Northeastern Brazil, Christometra paradoxa gen. et sp. nov. This species is based on a new specimen (a female), as well as a previously figured one (a male), providing a rare case of preservation of sexually dimorphic features in the fossil record. This is the third species coming from this deposit, which is Aptian-Albian in age and the oldest deposit to have yielded hydrometrids so far. Only five other Mesozoic species are known, being slightly younger in age (Cenomanian). So far, phylogenetic analyses have recovered Cretaceous hydrometrids as basal relative to Cenozoic genera but, Christometra paradoxa exhibits several advanced characteristics that unite it in a clade together with the extant genera Hydrometra and Bacillometroides, in a more derived position than any previously known fossil hydrometrid.

The present publication is registered in the Official Register of Zoological Nomenclature (Zoobank), under the registration number http://zoobank.org/urn:lsid:zoobank.org:pub:3CFA88AB-3CBC-4CCC-8196-698ECC863947. The registration number for the nomenclatural act of the genus is http://zoobank.org/urn:lsid:zoobank.org:act:84744426-1259-4864-8E3F-E43E0DAB2021, and that of the species is http://zoobank.org/urn:lsid:zoobank.org:act:23700AB2-F7AD-4F50-A5E7-CB28868079B2.  相似文献   


9.
Abstract  Along with the major component, (E1–10–hexadecenal (E10–16: Al,), two minor components, (Z)-10-hexadecenal(Z10-l6:Aid) and hexadecanal (16: Ald) were identified as components of the sex pheromone of Dichocrocis punctiferalis Guenee. Analysis of single sex pheromone gland extracts by capillary gas chromatography indicated that the relative ratio of 16:Ald, E10–16:Aldt and 210–16:Ald was equal to 13. 0:80. 4:6. 6 respectively. Field trails indicated that 210–16: Ald and 16: Aid alone caught no males. The most attractive was a blend containing 16: Ald, E10–16:Ald, and 210–16: Ald at a ratio of 16:100:8, and a two-compound blend of E10–16:Ald and 210–16:Ald at a ratio of 100:8.  相似文献   

10.
Macronutrient balance is an important determinant of fitness in many animals, including insects. Previous studies have shown that altering the concentrations of yeast and sugar in the semi-synthetic media has a profound impact on lifespan in Drosophila melanogaster, suggesting that dietary protein:carbohydrate (P:C) balance is the main driver of lifespan and ageing processes. However, since yeast is rich in multiple nutrients other than proteins, this lifespan-determining role of dietary P:C balance needs to be further substantiated through trials using a chemically-defined, synthetic diet. In the present study, the effects of dietary P:C balance on lifespan and fecundity were investigated in female D. melanogaster flies fed on one of eight isocaloric synthetic diets differing in P:C ratio (0:1, 1:16, 1:8, 1:4, 1:2, 1:1, 2:1 or 4:1). Lifespan and dietary P:C ratio were related in a convex manner, with lifespan increasing to a peak at the two intermediate P:C ratios (1:2 and 1:4) and falling at the imbalanced ratios (0:1 and 4:1). Ingesting nutritionally imbalanced diets not only caused an earlier onset of senescence but also accelerated the age-dependent increase in mortality. Egg production was suppressed when flies were fed on a protein-deficient food (0:1), but increased with increasing dietary P:C ratio. Long-lived flies at the intermediate P:C ratios (1:2 and 1:4) stored a greater amount of lipids than those short-lived ones at the two imbalanced ratios (0:1 and 4:1). These findings provide a strong support to the notion that adequate dietary P:C balance is crucial for extending lifespan in D. melanogaster and offer new insights into how dietary P:C balance affects lifespan and ageing through its impacts on body composition.  相似文献   

11.
The partition coefficient Kp was measured for a headgroup-labeled phospholipid (12:0,12:0)-N-(7-nitrobenz-2-oxa-1,3-diazol-4-yl)-PE (12-NBD-PE), equilibrated between LUV of a series of phosphatidylcholines (PC). Fluorescence resonance energy transfer between the 12-NBD-PE and a headgroup-rhodamine-labeled PE was used to find the equilibrium concentration of the 12-NBD-PE in the different LUV. Reliable equilibrium concentrations were obtained by monitoring the approach to equilibrium starting from a concentration below and from a concentration above the ultimate values. Using (16:0,18:1delta9)-PC as the reference lipid, Kp ranged from a high value of 1.65 favoring (16:0,18:1delta9)-PC over (16:1delta9,16:1delta9)-PC, to a low value of 0.90, favoring (22:1delta13,22:1delta13)-PC over (16:0,18:1delta9)-PC. The Kp values enabled calculation of the acyl chain contribution to the excess free energy of mixing for (12:0,12:0) acyl chains at infinite dilution in the L alpha phase of PC having acyl chains of (16:0,18:1delta9), (16:1delta9,16:1delta9), (18:1delta9,18:1delta9), (18:1delta6,18:1delta6), (20:1delta11,20:1delta11), and (22:1delta13,22:1delta13). (14:1delta9,14:1delta9)-PC was found to transfer so rapidly between LUV as to preclude reliable Kp measurement.  相似文献   

12.
Yen‐Tsung Huang 《Biometrics》2019,75(4):1191-1204
Mediation effects of multiple mediators are determined by two associations: one between an exposure and mediators (‐) and the other between the mediators and an outcome conditional on the exposure (‐). The test for mediation effects is conducted under a composite null hypothesis, that is, either one of the ‐ and ‐ associations is zero or both are zeros. Without accounting for the composite null, the type 1 error rate within a study containing a large number of multimediator tests may be much less than the expected. We propose a novel test to address the issue. For each mediation test , , we examine the ‐ and ‐ associations using two separate variance component tests. Assuming a zero‐mean working distribution with a common variance for the element‐wise ‐ (and ‐) associations, score tests for the variance components are constructed. We transform the test statistics into two normally distributed statistics under the null. Using a recently developed result, we conduct hypothesis tests accounting for the composite null hypothesis by adjusting for the variances of the normally distributed statistics for the ‐ and ‐ associations. Advantages of the proposed test over other methods are illustrated in simulation studies and a data application where we analyze lung cancer data from The Cancer Genome Atlas to investigate the smoking effect on gene expression through DNA methylation in 15 114 genes.  相似文献   

13.
ABSTRACT: BACKGROUND: The SAMtools utilities comprise a very useful and widely used suite of software for manipulating files and alignments in the SAM and BAM format, used in a wide range of genetic analyses. The SAMtools utilities are implemented in C and provide an API for programmatic access, to help make this functionality available to programmers wishing to develop in the high level Ruby language we have developed bio-samtools, a Ruby binding to the SAMtools library. RESULTS: The utility of SAMtools is encapsulated in 3 main classes, Bio::DB::Sam, representing the alignment files and providing access to the data in them, Bio::DB::Alignment, representing the individual read alignments inside the files and Bio::DB::Pileup, representing the summarised nucleotides of reads over a single point in the nucleotide sequence to which the reads are aligned. CONCLUSIONS: bio-samtools is a flexible and easy to use interface that programmers of many levels of experience can use to access the information in the popular and common SAM/BAM format.  相似文献   

14.
Spirochete periplasmic flagella (PFs), including those from Brachyspira (Serpulina), Spirochaeta, Treponema, and Leptospira spp., have a unique structure. In most spirochete species, the periplasmic flagellar filaments consist of a core of at least three proteins (FlaB1, FlaB2, and FlaB3) and a sheath protein (FlaA). Each of these proteins is encoded by a separate gene. Using Brachyspira hyodysenteriae as a model system for analyzing PF function by allelic exchange mutagenesis, we analyzed purified PFs from previously constructed flaA::cat, flaA::kan, and flaB1::kan mutants and newly constructed flaB2::cat and flaB3::cat mutants. We investigated whether any of these mutants had a loss of motility and altered PF structure. As formerly found with flaA::cat, flaA::kan, and flaB1::kan mutants, flaB2::cat and flaB3::cat mutants were still motile, but all were less motile than the wild-type strain, using a swarm-plate assay. Sodium dodecyl sulfate-polyacrylamide gel electrophoresis and Western blot analysis indicated that each mutation resulted in the specific loss of the cognate gene product in the assembled purified PFs. Consistent with these results, Northern blot analysis indicated that each flagellar filament gene was monocistronic. In contrast to previous results that analyzed PFs attached to disrupted cells, purified PFs from a flaA::cat mutant were significantly thinner (19.6 nm) than those of the wild-type strain and flaB1::kan, flaB2::cat, and flaB3::cat mutants (24 to 25 nm). These results provide supportive genetic evidence that FlaA forms a sheath around the FlaB core. Using high-magnification dark-field microscopy, we also found that flaA::cat and flaA::kan mutants produced PFs with a smaller helix pitch and helix diameter compared to the wild-type strain and flaB mutants. These results indicate that the interaction of FlaA with the FlaB core impacts periplasmic flagellar helical morphology.  相似文献   

15.
Molecular motors such as kinesin regulate affinity to a rail protein during the ATP hydrolysis cycle. The regulation mechanism, however, is yet to be determined. To understand this mechanism, we investigated the structural fluctuations of the motor head of the single‐headed kinesin called KIF1A in different nucleotide states using molecular dynamics simulations of a Gō‐like model. We found that the helix at the microtubule (MT) binding site intermittently exhibits a large structural fluctuation when MT is absent. Frequency of this fluctuation changes systematically according to the nucleotide states and correlates strongly with the experimentally observed binding affinity to MT. We also showed that thermal fluctuation enhances the correlation and the interaction with the nucleotide suppresses the fluctuation of the helix . These results suggest that KIF1A regulates affinity to MT by changing the flexibility of the helix during the ATP hydrolysis process: the binding site becomes more flexible in the strong binding state than in the weak binding state. Proteins 2015; 83:809–819. © 2015 Wiley Periodicals, Inc.  相似文献   

16.
Comparisons of to can provide insights into the evolutionary processes that lead to differentiation, or lack thereof, among the phenotypes of different groups (e.g., populations, species), and these comparisons have been performed on a variety of taxa, including humans. Here, I show that for neutrally evolving (i.e., by genetic drift, mutation, and gene flow alone) quantitative characters, the two commonly used estimators have somewhat different interpretations in terms of coalescence times, particularly when the number of groups that have been sampled is small. A similar situation occurs for estimators. Consequently, when observations come from only a small number of groups, which is not an unusual situation, it is important to match estimators appropriately when comparing to .  相似文献   

17.
Reliable estimates of effective population size are of central importance in population genetics and evolutionary biology. For populations that fluctuate in size, harmonic mean population size is commonly used as a proxy for (multi‐) generational effective size. This assumes no effects of density dependence on the ratio between effective and actual population size, which limits its potential application. Here, we introduce density dependence on vital rates in a demographic model of variance effective size. We derive an expression for the ratio in a density‐regulated population in a fluctuating environment. We show by simulations that yearly genetic drift is accurately predicted by our model, and not proportional to as assumed by the harmonic mean model, where N is the total population size of mature individuals. We find a negative relationship between and N. For a given N, the ratio depends on variance in reproductive success and the degree of resource limitation acting on the population growth rate. Finally, our model indicate that environmental stochasticity may affect not only through fluctuations in N, but also for a given N at a given time. Our results show that estimates of effective population size must include effects of density dependence and environmental stochasticity.  相似文献   

18.
This study investigated the differential sensitivity of the photoinducible phase (Φi) to light in the redheaded bunting (Emberiza bruniceps). Using a skeleton paradigm, we assessed the rate and magnitude of testicular response as a function of the duration of an inducing light pulse and of the time of its introduction in Φi. For a period of 7 weeks, birds received at an intensity of ~100 lux, the same (6 h) entraining light stimulus with a varied inducing light pulse: 1, 2, 4 or 6 h beginning at zeitgeber time (zt) 11 (6L:5D:1L:12D, 6L:5D:2L:11D, 6L:5D:4L:9D or 6L:5D:6L:7D), or 1h pulses at zt 12 (6L:6D:1L:11D) or zt 16 (6L:10D:1L:7D). The testes were stimulated in all LD alternations, but duration- and time-dependent effects of the light pulse on the rate and magnitude of the testicular response were clearly evident. Illumination of a larger portion of Φi seems to result in higher rates of gonadal growth but there is a duration limit above which there will be no further increase of testicular response.  相似文献   

19.
AIMS: To test the effects of C : N : P ratio modification of a well-known nutrient medium formulation, the Endo formulation on biofilm formation by Enterobacter cloacae Ecl and Citrobacter freundii Cf1 in both single-species and binary species biofilms. METHODS AND RESULTS: The C : N : P atom : atom ratio of a well-known nutrient medium formulation, the Endo formulation, that has been applied in fermentative biohydrogen studies, was modified to include two different C concentrations, one containing 17.65 g l(-1) and the other 8.84 g l(-1) sucrose, each containing four different C : N : P ratios, two at higher C : N : P ratios (334 : 84 : 16.8 and 334 : 84 : 3) and two at lower C : N : P ratios (334 : 28 : 5.6 and 334 : 28 : 1). Attached cells were enumerated after dislodging the biofilms that had formed on granular activated carbon (GAC). The modified medium containing 17.65 g l(-1) sucrose and having a C : N : P ratio of 334 : 28 : 5.6 resulted in significantly (P < 0.05) higher counts of attached cells for both single-species biofilms at 7.73 log(10) CFU g(-1) GAC and 9.3 log(10)CFU g(-1) GAC for Ent. cloacae Ecl and Cit. freundii Cf1, respectively, and binary species biofilms at 8.2 log(10) CFU g(-1) GAC and 6.34 log(10) CFU g(-1) GAC for Ent. cloacae Ecl and Cit. freundii Cf1, respectively. Scanning electron micrographs showed qualitative evidence that the 334 : 28 : 5.6 ratio encouraged more complex and extensive biofilm growth for both single-species and binary species biofilms. CONCLUSIONS: The differences in the attachment numbers between the different ratios were found not to be a result of the individual actions of the bacterial isolates involved but rather because of the effects of the various C : N : P ratios. The 334 : 28 : 5.6 ratio showed significantly (P < 0.05) higher counts of attached cells for both single-species and binary species biofilms. SIGNIFICANCE AND IMPACT OF THE STUDY: This study indicates that C : N : P ratios should be a key consideration with regard to maximizing biofilm formation in shake flask and fluidized bed bioreactor studies as well as understanding fundamental factors affecting biofilm growth in natural environments.  相似文献   

20.
A new genus and species, Succinapion telnovi n. gen. et n. sp. (Coleoptera: Curculionoidea: Brentidae: Apioninae: Kalcapiini) is described and illustrated from Upper Eocene Baltic amber. The new genus is similar to the genus Melanapion Wagner, 1930 but differs from it in having femora ventrally with spine at distal 1/3, simple claws, a longer rostrum, elytra weakly widened towards apex, longer antennae and slightly narrower elytral striae.http://www.zoobank.org/urn:lsid:zoobank.org:pub:2A95C49D-5589-4ACA-8A87-0DDF635BA25E  相似文献   

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