Pulmonary Manifestations of Parasitic Infestations

Parasitic infestations in man may cause transient or permanent pulmonary lesions. The lesions occur during migration and evolution of the parasites, during parasitemia, or during the final habitat. These manifestations, though infrequent in Canadian medical practice, present difficulties in diagnosis. Life cycles, mode of entry, and migration of parasites in the human body are described and illustrative case histories presented. In this series, transient pulmonary changes were associated with Ascaris lumbricoides, Ankylostoma duodenale, filariasis, Giardia lamblia and Trichinella spiralis; permanent lesions were produced by Entameba histolytica and Tenia echinococcus. Other parasites which may produce pulmonary changes are Strongyloides stercoralis and several types of Filaria (transient); Schistosoma, Paragonimus westermani (permanent). A case of amebiasis is presented illustrating the latent stage of infestation which lasted several decades before the organism spread from bowel to para-aortic nodes, to the lumen of the inferior cava, thence to the radicles of the portal vein and lung.     

Help or hindrance? The evolutionary impact of whole‐genome duplication on immunogenetic diversity and parasite load

Whole‐genome duplication (WGD) events occur in all kingdoms and have been hypothesized to promote adaptability. WGDs identified in the early history of vertebrates, teleosts, and angiosperms have been linked to the large‐scale diversification of these lineages. However, the mechanics and full outcomes of WGD regarding potential evolutionary impacts remain a topic of debate. The Corydoradinae are a diverse subfamily of Neotropical catfishes with over 170 species described and a history of WGDs. They are divided into nine mtDNA lineages, with species coexisting in sympatric—and often mimetic—communities containing representatives of two or more of the nine lineages. Given their similar life histories, coexisting species of Corydoras might be exposed to similar parasite loads and because of their different histories of WGD and genome size they provide a powerful system for investigating the impacts of WGD on immune diversity and function in an animal system. Here, we compared parasite counts and the diversity of the immune‐related toll‐like receptors (TLR) in two coexisting species of Corydoras catfish (C. maculifer and C. araguaiaensis), one diploid and one putative tetraploid. In the putative tetraploid C. araguaiaensis, we found significantly lower numbers of parasites and significantly higher diversity (measured by both synonymous and nonsynonymous SNP counts) in two TLR genes than in the diploid C. maculifer. These results provide insight into how WGD may impact evolution, in this case by providing greater immunogenetic diversity.     

Preserving Preuss’s Red Colobus (<Emphasis Type="Italic">Piliocolobus preussi</Emphasis>): an Ethnographic Analysis of Hunting,Conservation, and Changing Perceptions of Primates in Ikenge-Bakoko,Cameroon

The futures of nonhuman primate species and human communities in shared landscapes rely on our ability to engage with and understand the complex histories and multiscalar aspects of human–animal relationships. We use the Critically Endangered Preuss’s red colobus (Piliocolobus preussi) as a case study to examine the important ways in which histories of multiscalar human–primate interactions play out in the village of Ikenge-Bakoko, Korup National Park, Cameroon. We contextualize ethnographic and catchment data from adult men (N?=?32) and women (N?=?31) within long-term diurnal primate monitoring datasets to better understand the relationships among hunting practices, local perceptions of diurnal primates, populations of P. preussi, and conservation management. Our data indicate a disconnect between local cultural definitions of “hunter” and Western assumptions as to the makeup and nature of this and other categories. We show that such contradictions can have negative outcomes for conservationists seeking to turn the science of establishing accurate off-take rates of prey species into practical management solutions. Using a single village as a focal point, we highlight the importance of an ethnoprimatological approach to understanding the intricate entanglements among conservation histories, subsistence strategies, and human and nonhuman primate lives. The application of ethnoprimatology is critical for twenty-first century primatologists who must navigate conservation concerns while also acknowledging and valuing the experiences of the human communities living alongside the primates we study.     

Effect of Eradication of Helicobacter pylori on Expression Levels of FHIT,IL-8 and P73 in Gastric Mucosa of First-Degree Relatives of Gastric Cancer Patients

Objectives

Helicobacter pylori (H. pylori) infection plays an important role in the carcinogenesis and development of gastric cancer. Eradication of H. pylori can effectively reduce the risk of gastric cancer, but the underlying mechanisms are not fully understood. This study aimed to investigate the effect of eradication of H. pylori on the expression levels of FHIT, IL-8 and P73 in the gastric mucosa of first-degree relatives of gastric cancer patients.

Methods

One hundred and thirty-two patients with functional dyspepsia having first-degree relatives with gastric cancer were prospectively recruited in this study. Nine patients presented with H. pylori infection and family histories of gastric cancer, 61 with H. pylori infection and without family histories of gastric cancer, 6 without H. pylori infection and with family histories of gastric cancer, and 56 without H. pylori infection and family histories of gastric cancer. The protein and mRNA expression levels of FHIT, IL-8 and P73 in gastric mucosa of the subjects were detected by immunohistochemical staining and polymerase chain reaction, respectively.

Results

Compared with the patients without H. pylori infection and family histories of gastric cancer, both the protein and mRNA levels of FIHT significantly decreased in patients with H. pylori infection and/or family histories of gastric cancer, and both the protein and mRNA levels of IL-8 significantly increased. After eradication of H. pylori, both the protein and mRNA levels of FHIT were significantly higher, and both the protein and mRNA levels of IL-8 were significantly lower. However, H. pylori infection and family histories of gastric cancer had no major effect on P73 expression.

Conclusions

Down-regulation of FHIT and up-regulation of IL-8 may be involved in the pathogenesis of H. pylori infection in the first-degree relatives of gastric cancer patients.     

Tropical and temperate freshwater amphidromy: a comparison between life history characteristics of Sicydiinae,ayu, sculpins and galaxiids

Amphidromy is a distinctive form of diadromy, but differences in the life histories of tropical and temperate amphidromous fishes suggest that there are two types of freshwater amphidromy. The life histories of Sicydiinae gobies, ayu (Plecoglossus altivelis), Japanese sculpins (Cottus) and galaxiids (Galaxiidae), suggest that the Sicydiinae are representatives of tropical freshwater amphidromy, whereas ayu, sculpins and galaxiids are representatives of temperate freshwater amphidromy. The Sicydiine larval stage may be required to occur in the ocean for all species, but ayu, sculpins and galaxiids have landlocked or fluvial forms with larvae that do not need to enter the ocean for larval feeding and growth. This suggests that Sicydiine larvae have a high oceanic dependency whereas ayu, sculpins and galaxiid larvae have a low oceanic dependency. Freshwater amphidromous fish in tropical and temperate zones appear to have developed two different strategies in the evolution of their life histories. It is likely that the evolutionary direction of the larval stage of tropical amphidromy is to remain in the sea and that of temperate amphidromy is towards having the ability to remain in freshwater if needed. Tropical and temperate amphidromy appear to be biologically informative categories and evaluations of this hypothesis will facilitate better understanding of the various forms of amphidromy in the future.     

Migratory patterns of lower Feather River natural and hatchery-origin Oncorhynchus mykiss

Oncorhynchus mykiss are known to exhibit variable life histories expressed under genetic control or through the influence of the environment. Altered environmental conditions and the presence of large numbers of non-indigenous hatchery fish can affect the rate of anadromy observed in California’s Central Valley O. mykiss. The lower Feather River, a large regulated river in Northern California, supports one of the largest populations of O. mykiss in the Central Valley, heavily subsidized by hatchery production. I examined downstream migratory behavior, movement rate, and success of natural-origin juveniles, natural-origin adults, and hatchery-origin fish using acoustic telemetry. I found that all three groups displayed a mix of migratory and non-migratory life histories. Hatchery-origin adults exhibited more migratory behavior (anadromy) than natural-origin juveniles and natural-origin adults, 41 %, 24 %, and 13 % respectively. Downstream migrants were also significantly larger than non-migratory fish. Migration timing was similar among the three groups, but natural-origin juveniles displayed the most rapid rate of movement. The relative success of each group was highest for fish migrating through the Sacramento-San Joaquin Delta to the Pacific Ocean. Hatchery-origin adults migrating through the lower Feather River showed the lowest relative success (33 %). The dominance of non-migratory life histories pattern among lower Feather River O. mykiss may be in response to the suitable habitat provided by hypolimnetic releases below dams and the current hydrological regime within the highly altered Sacramento-San Joaquin watershed.     

Mechanisms involved in the formation of plaque-forming derivatives from over-sized hybrid phages between bacteriophage P1 and the R plasmid NR1

Three case histories document how subsequent events of genomic rearrangements and selection interplay in the evolution of infectious bacteriophage genomes carrying acquired genes. Two of the phages studied were plaque-forming P1CmTc recombinants derived from P1Cm1 and P1Tc1, both of which are hybrids between phage P1 and the R plasmid NR1. In the formation of the P1CmTc4 genome a postulated intermediate underwent IS1-mediated deletion formation. From the same intermediate P1CmTc1 must have evolved by IS1-mediated inversion followed by homologous recombination with a parental phage DNA. The third case documents formation of the P1Cm2 genome by “illegitimate” intramolecular recombination in the genome of P1-r-det, a hybrid between P1 and NR1.     

Establishing conservation units to promote recovery of two threatened freshwater mussel species (Bivalvia: Unionida: Potamilus)

Population genomics has significantly increased our ability to make inferences about microevolutionary processes and demographic histories, which have the potential to improve protection and recovery of imperiled species. Freshwater mussels (Bivalvia: Unionida) represent one of the most imperiled groups of organisms globally. Despite systemic decline of mussel abundance and diversity, studies evaluating spatiotemporal changes in distribution, demographic histories, and ecological factors that threaten long‐term persistence of imperiled species remain lacking. In this study, we use genotype‐by‐sequencing (GBS) and mitochondrial sequence data (mtDNA) to define conservation units (CUs) for two highly imperiled freshwater mussel species, Potamilus amphichaenus and Potamilus streckersoni. We then synthesize our molecular findings with details from field collections spanning from 1901 to 2019 to further elucidate distributional trends, contemporary status, and other factors that may be contributing to population declines for our focal species. We collected GBS and mtDNA data for individuals of P. amphichaenus and P. streckersoni from freshwater mussel collections in the Brazos, Neches, Sabine, and Trinity drainages ranging from 2012 to 2019. Molecular analyses resolved disputing number of genetic clusters within P. amphichaenus and P. streckersoni; however, we find defensible support for four CUs, each corresponding to an independent river basin. Evaluations of historical and recent occurrence data illuminated a generally increasing trend of occurrence in each of the four CUs, which were correlated with recent increases in sampling effort. Taken together, these findings suggest that P. amphichaenus and P. streckersoni are likely rare throughout their respective ranges. Because of this, the establishment of CUs will facilitate evidence‐based recovery planning and ensure potential captive propagation and translocation efforts are beneficial. Our synthesis represents a case study for conservation genomic assessments in freshwater mussels and provides a model for future studies aimed at recovery planning for these highly imperiled organisms.     

Coalescent histories for discordant gene trees and species trees

Given a gene tree and a species tree, a coalescent history is a list of the branches of the species tree on which coalescences in the gene tree take place. Each pair consisting of a gene tree topology and a species tree topology has some number of possible coalescent histories. Here we show that, for each n≥7, there exist a species tree topology S and a gene tree topology G≠S, both with n leaves, for which the number of coalescent histories exceeds the corresponding number of coalescent histories when the species tree topology is S and the gene tree topology is also S. This result has the interpretation that the gene tree topology G discordant with the species tree topology S can be produced by the evolutionary process in more ways than can the gene tree topology that matches the species tree topology, providing further insight into the surprising combinatorial properties of gene trees that arise from their joint consideration with species trees.     

Factors associated with annual-interval mammography for women in their 40s

Background: Evidence is mounting that annual mammography for women in their 40s may be the optimal schedule to reduce morbidity and mortality from breast cancer. Few studies have assessed predictors of repeat mammography on an annual interval among these women. Methods: We assessed mammography screening status among 596 insured Black and Non-Hispanic white women ages 43–49. Adherence was defined as having a second mammogram 10–14 months after a previous mammogram. We examined socio-demographic, medical and healthcare-related variables on receipt of annual-interval repeat mammograms. We also assessed barriers associated with screening. Results: 44.8% of the sample were adherent to annual-interval mammography. A history of self-reported abnormal mammograms, family history of breast cancer and never having smoked were associated with adherence. Saying they had not received mammography reminders and reporting barriers to mammography were associated with non-adherence. Four barrier categories were associated with women's non-adherence: lack of knowledge/not thinking mammograms are needed, cost, being too busy, and forgetting to make/keep appointments. Conclusions: Barriers we identified are similar to those found in other studies. Health professionals may need to take extra care in discussing mammography screening risk and benefits due to ambiguity about screening guidelines for women in their 40s, especially for women without family histories of breast cancer or histories of abnormal mammograms. Reminders are important in promoting mammography and should be coupled with other strategies to help women maintain adherence to regular mammography.     

Demethylation of the aryl hydrocarbon receptor repressor as a biomarker for nascent smokers

Epigenetic modifications to peripheral white blood cell DNA occur in response to a wide variety of exposures. In prior work, we and others have shown that broad changes in DNA methylation, particularly at the aryl hydrocarbon receptor repressor (AHRR) locus, occur in samples from subjects with long histories of smoking. However, given the large number of epigenetic changes that occur in response to prolonged smoking, the primacy of the response at AHRR and the sensitivity of these changes to low levels of smoking are not known. Therefore, we examined the association of smoking to genome lymphocyte DNA methylation status in a representative sample of 399 African American youths living in the rural South that includes 72 subjects with less than one half-pack year of exposure. Consistent with our prior findings, we found a stepwise effect of smoking on DNA methylation among youth with relatively brief exposure histories at a CpG residue in AHRR (cg05575921) (FDR corrected p values; 3 × 10⁻⁷ and 0.09 in the male and female samples, respectively) that was identified in previous studies and at which the effects of smoking were significant, even in those subjects with less than one half pack year exposure. We conclude that AHRR demethylation at cg05575921 in peripheral cells may serve as an early, sensitive biomarker for even low levels of exposure to tobacco smoke, providing a non-self-report alternative for nascent exposure to tobacco smoke. We also suggest that the AHRR/AHR pathway may be functional in the response of peripheral white blood cells to tobacco smoke exposure.     

Life history patterns of six sympatric species of Leptophlebiidae (Ephemeroptera) in a New Zealand stream and the role of interspecific competition in their evolution

Nymphal life histories of six sympatric species of Leptophlebiidae (Ephemeroptera) were studied in Waitakere River and its tributary, Cascade Stream, a kauri forest stream system in northern New Zealand. Species examined were Neozephlebia scita (Walker), Austroclima jollyae Towns & Peters, Deleatidium myzobranchia Phillips, D. lillii Eaton, Deleatidium sp. A and Deleatidium sp. C. A mixture of well and poorly synchronised life cycles occurred within the guild. Species of Deleatidium had life histories which ranged from univoltine (D. lillii and D. myzobranchia) to weakly bivoltine with overlapping generations and cohorts (Deleatidium sp. C). There was little evidence of temporal segregation, but instead a highdegree of habitat and life history overlap. This conflicts with models based on stream insects from temperate northern hemisphere streams and usually attributed to niche differentiation in response to interspecific competition. The possible role of interspecific competition in evolution of life histories of stream in vertebrates is assessed. It is noted that temporal segregation of life histories does not by itself demonstrate differential use of common resources by congenerics, and that there is little direct evidence to support the widespread assumption that competition is a major influence on the evolution and composition of lotic communities.     

A developmental model for predicting handedness frequencies in crabs

Brachyuran crabs develop handedness in at least two different ways. Some crabs, such as Cancer productus, become heterochelous through use-induced differences in claw growth. Other crab species, for instance Carcinus maenas, appear to have a genetic predisposition towards right handedness. In this latter case, however, handedness reversal may take place following autotomy of the major claw. Thus, in C. maenas, and other species with this developmental strategy, younger cohorts are strongly biased towards right-handed individuals and the frequency of left-handedness increases with each subsequent moult. In the absence of differential mortality the ratio of left-handed to right-handed crabs in a given population should be predictable if the frequencies of right and left claw loss are known for different stages in the life history. Here, we develop a simple mathematical model for predicting handedness in crabs under the Carcinus-model of claw ontogeny and apply it to two species with very different ecologies and life histories; the green crab (Carcinus maenas (L.)) and the Trinidadian mountain crab (Eudaniela garmani (Rathburn)). The predicted and observed handedness frequencies were in complete concordance for the early intermoults of both species but significantly deviated in mature C. maenas where left-handed individuals were under-represented in the population. These results are discussed in the context of the evolution and functional significance of claw autotomy and handedness in crabs.     

Life-History Inference in the Early Hominins Australopithecus and Paranthropus

The life histories of early hominins are commonly characterized as being like those of great apes. However, the life histories of the extant great apes differ considerably from one another. Moreover, the extent to which their life histories correlate with the two aspects of morphology used to infer the life histories of fossil species, brain size and dental development, has remained subject to debate. Increased knowledge of great ape life histories and, more recently, dental development —in particular ages at first molar emergence— now make it clearer that the latter is strongly associated with important life-history attributes, whereas brain size, as reflected by cranial capacity, is less informative. Here we estimate ages at M1 emergence in several infant/juvenile individuals of Australopithecus and Paranthropus based on previous estimates of ages at death, determined through dental histology. These are uniformly earlier than would be predicted either by adult cranial capacity or by comparison to ages at M1 emergence in free-living extant great apes. This suggests that either, 1) the life histories of the early hominins were faster than those of all extant great apes; 2) there was selection for rapid initial dental development and presumably early weaning, but that early hominin life histories were otherwise more prolonged and consistent with adult cranial capacities; or 3) the ages at death have been systematically underestimated, resulting in underestimates of the ages at M1 emergence. We investigate the implications of each of these alternatives and, where possible, explore evidence that might support one over the others.     

Habitat and fire heterogeneity explain the co-occurrence of congeneric resprouter and reseeder Hypericum spp. along a Florida pine savanna ecocline

The distribution of resprouting and reseeding woody plants may be limited by the frequency of disturbances. Such species have a high probability of persisting in frequently and rarely disturbed habitats and may co-occur at intermediate disturbance frequencies. Nonetheless, resprouters and reseeders of the genus Hypericum co-occur in frequently burned pine savannas of southeastern North America. We predicted that these congeners would sort along a fire frequency gradient resulting from fine scale variation in topography and soil moisture. We examined habitat associations of a resprouter (H. microsepalum), facultative reseeder/resprouter (H. brachyphyllum), and reseeder (H. chapmanii) that occur along Northern Florida pine savanna ecoclines. We sampled five belt transects of 50 continuous 1?×?1?m² plots for edaphic characteristics, fire spread, and densities of each species. Hypericum microsepalum was associated with upland, drier pine savannas where fires are frequent and typically burn uniformly across landscapes (2?C3?year fire frequency). In contrast, H. brachyphyllum and H. chapmanii were associated with intermediate mesic areas where fires burn increasingly patchily downslope along ecoclines from upland flatwoods to lowland wet depressions (10?C30?year fire frequency). Hypericum species of all life histories co-occur in intermediate areas where small changes in topography and edaphic characteristics generate a fire frequency gradient on a local scale. In pine savannas, fires vary from frequent to infrequent on a local within-landscape level as a function of elevation gradients. We conclude that the occurrence of such fire gradients along ecoclines should facilitate co-occurrence of plants with different life histories and thereby increase overall biodiversity.     

For Debate...: A Neurological Note on Vaccination against Influenza

Vaccination against influenza may be complicated by a neurological illness. Two case histories are presented together with a summary of seven others.     

Searching for Sympatric Speciation in the Genomic Era

Sympatric speciation illustrates how natural and sexual selection may create new species in isolation without geographic barriers. However, recent genomic reanalyses of classic examples of sympatric speciation reveal complex histories of secondary gene flow from outgroups into the radiation. In contrast, the rich theoretical literature on this process distinguishes among a diverse range of models based on simple genetic histories and different types of reproductive isolating barriers. Thus, there is a need to revisit how to connect theoretical models of sympatric speciation and their predictions to empirical case studies in the face of widespread gene flow. Here, theoretical differences among different types of sympatric speciation and speciation‐with‐gene‐flow models are reviewed and summarized, and genomic analyses are proposed for distinguishing which models apply to case studies based on the timing and function of adaptive introgression. Investigating whether secondary gene flow contributed to reproductive isolation is necessary to test whether predictions of theory are ultimately borne out in nature.     

Temporal patterns of forest seedling emergence across different disturbance histories

1. Forest ecosystems experience a myriad of natural and anthropogenic disturbances that shape ecological communities. Seedling emergence is a critical, preliminary stage in the recovery of forests post​ disturbance and is triggered by a series of abiotic and biotic changes. However, the long‐term influence of different disturbance histories on patterns of seedling emergence is poorly understood.
2. Here, we address this research gap by using an 11‐year dataset gathered between 2009 and 2020 to quantify the influence of different histories of natural (wildfire) and anthropogenic (clearcut and postfire salvage logging) disturbances on emerging seedlings in early‐successional Mountain Ash forests in southeastern Australia. We also describe patterns of seedling emergence across older successional forests varying in stand age (stands that regenerated in <1900s, 1939, 1970–90, and 2007–11).
3. Seedling emergence was highest in the first three years post disturbance. Stand age and disturbance history significantly influenced the composition and abundance of plant seedlings. Specifically, in salvage‐logged forests, plant seedlings were the most different from similarly aged forests with other disturbance histories. For instance, relative to clearcut and unlogged, burnt forests of the same age, salvage logging had the lowest overall richness, the lowest counts of Acacia seedlings, and an absence of common species including Acacia obliquinervia, Acacia frigescens, Cassinia arcuealta, Olearia argophylla, Pimelea axiflora, Polyscias sambucifolia, and Prosanthera melissifolia over the survey period.
4. Synthesis: Our findings provide important new insights into the influence of different disturbance histories on regenerating forests and can help predict plant community responses to future disturbances, which may influence forest recovery under altered disturbance regimes.