Fungi,leaves, and the theory of island biogeography

Species dynamics of fungi (filamentous fungi and yeasts) on apple leaves were studied within the framework of the theory of island biogeography by following immigration and extinction patterns on individual apple leaf islands over time. Total fungi were censused on unmanipulated leaves collected throughout two seasons; filamentous fungi only were monitored additionally for several weeks in one season on newly created, axenic, model (seedling) islands introduced to the orchard, and on surface-sterilized, preexisting leaves. Analyses based on both the natural and the surface-sterilized systems showed that an equilibrium in species number was reached and turnover in species composition occurred in both. Immigration and extinction events were strongly related to number of species present on each island. The balance between immigration and extinction implies that species number on leaves and real (oceanic) islands is determined by a common mechanism, and emphasizes the need to regard leaf microbial communities as dynamic.     

Style morph frequencies in Minnesota populations of Lythrum (Lythraceae)

Style morph frequencies (shortmidlong) were determined for a total of n = 11 918 plants in 16 Minnesota populations of Lythrum salicaria L. Nine populations were in the establishment phase, with population sizes ranging from n = 56 to n = 2 192. Most of these populations exceeded previously reported population sizes in the native European habitat. A nonparametric statistical test, the chi-square (²), can be used to determine if populations are at isoplethic equilibrium (111, shortmidlong); a ² value >5.99 is significant at the 5% level. Only one established population (White Bear Lake, n = 1991, ² = 3.0) fitted the null hypothesis for isoplethy, although all established populations contained all three style morphs. Pooled values for these populations indicated an excess of mids and longs, with shorts being deficient. Colonizing populations had a higher percentage of mids (54%) when compared to established populations (33.7%). Short styles were almost nonexistent (8%) in colonizing populations. Five out of the seven populations lacked at least one style morph. A review of the literature reporting style morph frequencies in tristylous L. salicaria revealed that no statistical analysis for isoplethy has been performed. Darwin originally assumed that all populations would be isoplethic, possessing equal numbers of all three style morphs, but concluded, without statistical analysis, that, instead, populations were anisoplethic. Since tests for statistical deviations from the expected frequencies (111) have not been used, ² analysis was performed. Several of these populations were at isoplethic equilibrium (Nadder su2 = 1.7, Blelham ² = 1.69, Potsdam ² = 1.5, Vestfold ² = 0.4, Buskerud ² = 5.62, Kilchberg ² = 0.35, Lausanne ² = 3.32, Canberra ² = 5.29, Massachusetts ² = 3.13), suggesting that the general conclusion of anisoplethy in tristylous L. salicaria is inappropriate.This is Scientific Journal Series Paper Number 19 128 of the Minnesota Agricultural Experiment Station     

Die ?Stresemannsche Revolution“ in der Ornithologie des frühen 20. Jahrhunderts

Zusammenfassung Erwin Stresemann (1889–1972), Generalsekretär, Präsident und Ehrenpräsident der Deutschen Ornithologischen Gesellschaft (bzw. Deutschen Ornithologen-Gesellschaft) über 50 Jahre, war einer der hervorragendsten Ornithologen des 20. Jahrhunderts. In den 1920er und 1930er Jahren gab er den Anstoß für eine weltweite Transformation der älteren, vorwiegend systematisch-faunistischen Ornithologie zu einem Zweig der modernen Biologie und beeinflusste einen großen Kreis von Zeitgenossen (die Stresemannsche Revolution). Mit seinem maßgeblichen Aves-Band (1927–1934) des Handbuchs der Zoologie und den Dissertationen seiner Schüler entstand durch Verbindungen mit der Genetik, der funktionellen Morphologie, der Physiologie und Ethologie der Vögel eine Neue Biologische Ornithologie.

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The Stresemann Revolution in ornithology during the early 20^th century

Summary Erwin Stresemann (1889–1972), Secretary General, President and Honorary President of the Society of German Ornithologists for 50 years, was one of the outstanding ornithologists of the 20^th century. During the 1920s and 1930s, he initiated the global transformation of the traditional ornithology, which had been primarily systematic and faunistic in scope, into a branch of modern biological science, a New Avian Biology, and influenced a large circle of contemporaries (the Stresemann Revolution). He forged links, directly or indirectly, between ornithology and genetics, functional morphology, physiology and ethology, when he published his seminal volume Aves (1927–1934) in the German Handbook of Zoology, and instigated the theses of a large number of PhD students.

     

Analysis of 1H chemical shifts in DNA: Assessment of the reliability of 1H chemical shift calculations for use in structure refinement

The reliability of ¹H chemical shift calculations for DNA is assessed by comparing the experimentally and calculated chemical shifts of a reasonably large number of independently determined DNA structures. The calculated chemical shifts are based on semiempirical relations derived by Giessner-Prettre and Pullman [(1987) Q. Rev. Biophys., 20, 113–172]. The standard deviation between calculated and observed chemical shifts is found to be quite small, i.e. 0.17 ppm. This high accuracy, which is achieved without parameter adjustment, makes it possible to analyze the structural dependencies of chemical shifts in a reliable fashion. The conformation-dependent ¹H chemical shift is mainly determined by the ring current effect and the local magnetic anisotropy, while the third possible effect, that of the electric field, is surprisingly small. It was further found that for a double helical environment, the chemical shift of the sugar protons, H2 to H5, is mainly affected by the ring current and magnetic anisotropy of their own base. Consequently, the chemical shift of these sugar protons is determined by two factors, namely the type of base to which the sugar ring is attached, C, T, A, or G, and secondly by the -angle. In particular, the H2 shift varies strongly with the -angle, and strong upfield H2 shifts directly indicate that the -angle is in the syn domain. The H1 shift is not only strongly affected by its own base, but also by its 3-neighboring base. On the other hand, base protons, in particular H5 of cytosine and methyl protons of thymine, are affected mainly by the 5-neighboring bases, although some effect (0.2 ppm) stems from the 3-neighboring base. The H2 protons are mainly affected by the 3-neighboring base. As a result of these findings a simple scheme is proposed for sequential assignment of resonances from B-helices based on chemical shifts.     

Nucleoside and deoxynucleoside phosphorylation in formamide solutions

Nucleosides or deoxynucleosides were converted to a number of phosphorylated nucleotide and deoxynucleotide derivatives by ammonium or alkali dihydrogen phosphates in formamide. Conversions were smaller and slower at room temperature and greater and faster at elevated temperatures. Nucleotides afforded product mixtures similar to those obtained for nucleosides under the same conditions, indicating the occurrence of transphosphorylation processes. Products of reaction at elevated temperatures were cyclic nucleotides, nucleoside monophosphates, nucleoside diphosphates and cyclic nucleotide phosphates. The relative amounts of products formed were quite temperature dependent. Cyclic nucleotides were found to be in greatest abudance for reactions run at 125° or above. Relative yields of 2, 3 and 5 nucleotides and 3 and 5 deoxynucleotides from several experiments are reported. 5-Monophosphates were generally found to be present in larger quantities than 2 or 3 monophosphates. 2-Deoxyadenosine showed a preference for phosphorylation at the 3 position. Conclusions reached from mechanistic studies are that the phosphorylations are a series of equilibrium reactions, with cyclic nucleotides being formed irreversibly.Presented in part at the 3rd Northwest and 5th Rocky Mountain Joint Regional ACS Meeting of the American Chemical Society, Salt Lake City, Utah, June, 1980.     

Pulse schemes for the measurement of3 JC′Cγ and3 JNCγ scalar couplings in 15N,13C uniformly labeled proteins

Pulse sequences are presented for the measurement of³J_CC and³J_NC scalar couplings for allC containing residues in¹⁵N,¹³C uniformly labeled proteins. The methodsdescribed are based on quantitative J correlation spectroscopy pioneered byBax and co-workers [Bax et al. (1994) Methods Enzymol., 239, 79–105].The combination of ³J_CC and³J_NC scalar coupling constants allows theassignment of discrete rotameric states about the ₁ torsion angle in cases where such states exist or, alternatively,facilitates the establishment of noncanonical ₁conformations or the presence of rotameric averaging. The methods areapplied to a 1.5 mM sample of staphylococcal nuclease.     

C alpha and C beta carbon-13 chemical shifts in proteins from an empirical database

We have constructed an extensive database of 13C C and C chemical shifts in proteins of solution, for proteins of which a high-resolution crystal structure exists, and for which the crystal structure has been shown to be essentially identical to the solution structure. There is no systematic effect of temperature, reference compound, or pH on reported shifts, but there appear to be differences in reported shifts arising from referencing differences of up to 4.2 ppm. The major factor affecting chemical shifts is the backbone geometry, which causes differences of ca. 4 ppm between typical - helix and -sheet geometries for C, and of ca. 2 ppm for C. The side-chain dihedral angle 1 has an effect of up to 0.5 ppm on the C shift, particularly for amino acids with branched side-chains at C. Hydrogen bonding to main-chain atoms has an effect of up to 0.9 ppm, which depends on the main- chain conformation. The sequence of the protein and ring-current shifts from aromatic rings have an insignificant effect (except for residues following proline). There are significant differences between different amino acid types in the backbone geometry dependence; the amino acids can be grouped together into five different groups with different , shielding surfaces. The overall fit of individual residues to a single non-residue-specific surface, incorporating the effects of hydrogen bonding and 1 angle, is 0.96 ppm for both C and C. The results from this study are broadly similar to those from ab initio studies, but there are some differences which could merit further attention.     

Non-coordinate synthesis of RNA polymerase beta beta'' subunits in a temperature-sensitive beta''-subunit mutant of Escherichia coli

Summary On exposure to high temperature of a temperature-sensitive RNA polymerase subunit (rpoC92) mutant of Escherichia coli, selective reduction was observed in the rate of synthesis of a group of proteins including RNA polymerase subunit. The finding that the synthesis of subunit but not subunit was specifically repressed in this mutant grown at non-permissive temperature indicates that the functionally intact RNA polymerase is required for the synthesis of subunits be coordinated. In addition, the assembly of newly synthesized RNA polymerase subunits was inefficient in this mutant at the steps where altered subunit was involved, and the unassembled enzyme subunits were rapidly and preferentially degraded. During recovery to non-restricted growth, the synthesis of both and subunits was transiently enhanced in parallel leading to recovery of the intracellular concentration of functional RNA polymerase.     

Aufbau, Variabilit?t und m?gliche Funktionen des Rufduetts beim ThermometerhuhnLeipoa ocellata

Zusammenfassung Beim ThermometerhuhnLeipoa ocellata tragen die Partner eine Paares ein Rufduett vor. Der Anteil des besteht aus einer Rufreihe, die sich aus einer Folge von 2–7 identischen, zweisilbigen Rufen zusammensetzt. Das trägt einen einzelnen, obertonreichen und langgezogenen Ruf vor. Sowohl der Ruf des als auch die Rufreihe des wird in Serien vorgetragen. Innerhalb einer solcher Ruf- bzw. Rufreihenserie können mehrere Duette auftreten. Die Rufe sind jedoch nicht ausschließlich an das Duett gebunden. Die Variabilität im Aufbau des Duetts äußert sich im Zeitpunkt des Einsatzes des antwortenden Vogels, in der Anzahl der -Rufe während des Duetts und in der Anzahl der Einheiten, aus denen sich der Duettanteil des zusammensetzt. Das beginnt signifikant häufiger als das eine Serie, in der ein oder mehrere Duette vorkommen. Ebenso ist es häufiger der Initiator des ersten in dieser Serie liegenden Duetts. Das Duett dient wohl hauptsächlich zur Festigung des Zusammenhalts zwischen den Paarpartnern. Es erfüllt jedoch von seinen physikalischen Eigenschaften her auch die Bedingungen, die für ein territorial wirksames Signal gelten.

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Structure, variability and possible functions of duetting in the Mallee FowlLeipoa ocellata

Summary In the Australian Mallee Fowl,Leipoa ocellata, both and of a pair are involved in a call duet. The part of the consists of a sequence of 2–7 identical two-syllable calls. The contributes a single long-drawn-out call rich in harmonics. The call of the as well as the call sequence of the are presented in series. Within a series of calls () or call sequences () several duets can occur. The respective vocalizations, however, do not exclusively occur during the duet.The variability in the details of the duet expresses itself in the lag period after which the mate responds, in the number of -calls during the duet, and in the number of calls within the call sequence of the . The begins a series during which one or several duets occur significantly more frequently than the . The circumstances under which duetting occurs indicate that duet calling mainly serves to maintain the pair bond. Moreover, due to its physical characteristics the duet also seems to be suited to serve as a territorial signal.

     

Measuring the chi 1 torsion angle in protein by CH-CH cross-correlated relaxation: a new resolution-optimised experiment

Here we introduce an experiment with high sensitivity and resolution for the measurement of CH-CH dipolar-dipolar cross-correlated relaxation rates (CCRR) in protein side-chains. The new methodology aims to the determination of structural and dynamical parameters around the torsion angle ₁ by measuring CH-CH cross-correlated relaxation rates. The method is validated on the protein ubiquitin: the ₁ angles determined from the CCRR data are compared with the ₁ angles of a previously determined NMR structure. The agreement between the two data sets is excellent for most residues. The few discrepancies that were found between the CCR-derived ₁ angles and the angles of the previously determined NMR structure could be explained by taking internal motion into account. The new methodology represents a very powerful tool to determine both structure and dynamics of protein side-chains in only one experiment.     

Einfluß von Bromuracil auf die Mutationsauslösung und Inaktivierung durch UV und Röntgenstrahlen beim Phagen χ

Zusammenfassung Durch Anreicherung in BUdR- und FUdR-haltigem Medium wurde in die DNS des Serratiaphagen Bromuracil (BU) eingebaut. Im CsCl-Gradienten zeigte die Dichte der BU--Partikel einen Ersatz des Thymins durch BU von 25 bis 30% an. Die Häufigkeit zweier Plaquetypmutanten (c und b) war in der BU--Population signifikant (durchschnittlich 1,4 bzw. 2,4), die des dritten Typs (e) nur insignifikant über die in BU-freien Phagen erhöht. Im Vergleich zu letzterem betrug die absolute Häufigkeit der zusätzlichen c- und b-Mutanten in BU- 2,2 × 10^–4 bzw. 1,1 × 10^–4.Die UV-Inaktivierung von BU- war etwa um den Faktor 1,40 höher als die des normalen . Die Inaktivierung durch Röntgenstrahlen war dagegen nur um das 1,14fache erhöht. Die Häufigkeit der durch Röntgenstrahlen induzierten Plaquemutationen wurde durch den BU-Einbau nicht merklich beeinflußt. Dagegen war die UV-Induktion der Mutationen sehr viel mehr verstärkt als die UV-Inaktivierung. Die Sensibilisierungsfaktoren der drei Mutantentypen waren verschieden und am höchsten bei niederen UV-Dosen (3,4, 5,0 und 22 für c, b bzw. e). Das bedeutet eine Annäherung der Dosiskurven an linearen Verlauf. Die zur Auslösung von Mutationen erforderliche Trefferzahl wird somit durch BU-Einbau vermindert. Für -normal entsprachen die Kurven der UV-Mutationsinduktion dem 2-Treffertyp. Es wird geschlossen, daß die Hemmung der Dunkelreaktivierung (HCR) der Letalläsionen und Prämutationen in BU-DNA nicht die einzige Ursache für die Unterschiede in den UV-Sensibilitäten ist, sondern daß die Bildung anderer UV-Produkte als in der normalen DNA ebenfalls eine Rolle spielt.

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Summary Bromouracil (BU) was incorporated into the DNA of theSerratiaphage by means of culture in a medium with BUdR and FUdR. The density of BU-x particles in the CsCl-gradient indicated a replacement of about 24 to 32 % of the thymine by BU. The frequency of two types of plaquemutants (c and b) in the BU--population was increased significantly above the frequencies in BU-free phage by average factors of 1.4 and 2.4, resp. A third mutant type (e) was increased less. The absolut frequencies of additional c- and b-mutants in BU- compared with normal were about 2.10^–4 and 1.10^–4, resp.The UV-inactivation of BU- was higher by a factor of about 1.40 than that of normal , the inactivation by X-rays was only 1.14 times higher. The X-ray induced plaquemutation frequencies were not remarkably influenced by incorporated BU, but UV-mutation-induetion was increased much stronger than UV-inactivation. The sensitization factors were different for the three mutation types and highest at low UV-doses (3.4, 5.0 and 22 for c, b and e resp.). The UV-dose curves of mutation induction in normal are of the 2 hit type, but for BU- they were significantly less curved indicating the participation of 1-hit-processes in premutation production. It is concluded that inhibition of dark repair (HCR) of lethal lesions and premutations in BU-DNA is not the only reason for the differences in UV-sensitivities but that production of other species of UV-products in BU-DNA than in normal DNA plays also a role.

     

ABO blood groups,leprosy, and serum proteins

Summary In 683 leprosy patients from Chiang Mai, Thailand, the associations between ABO blood groups, type and clinical features of leprosy, and electrophoretically identifiable serumprotein fractions (albumins: ₁-, ₂-, - and -globulins) were examined. Besides, the blood group frequencies in 388 leprosy patients were compared with suitable controls. Blood groups A and AB turned out to be somewhat more frequent in patients than in controls. Combined analysis with 31 series from literature reports gave X=1.0776; ²=1)=12.232. In comparisons within our group of patients which contained almost exclusively lepromatous and dimorphous patients a certain tendency towards more severe involvement of blood group A was observed within the lepromatous group and a higher frequency of eye involvement in group A was (weakly) significant (²=1)=6.188).As to serum proteins ₁- and ₂-globulins were decreased (weakly) significantly in blood group A patients who were at least 40 years old. Furthermore, a number of relationships of serum protein fractions with age, sex, and state of the infection, most of which are known from the literature, could be confirmed.     

Binding of the galactose-specificPseudomonas aeruginosa lectin,PA-I,to glycosphingolipids and other glycoconjugates

The carbohydrate-binding specificity ofPseudomonas aeruginosa lectin I (PA-I) in iodinated or biotinylated form was studied. A large number of glycosphingolipids, as well as some glycoproteins and neoglycoproteins were used as ligands. Also, inhibition by free saccharides of PA-I binding to glycosphingolipids was tested. It was found that the lectin binds most strongly to terminal and nonsubstituted Gal3Gal- or Gal4Gal-structures.Abbreviations PA-I Pseudomonas aeruginosa lectin I - Cer ceramide - lactosylceramide Gal4GlcCer - iso globotriaosylcerami Gal3Gal4GlcCer - globotriaosylceramide Gal4Gal4GlcCer - globoside or globotetraosylceramide GalNAc3Gal4Gal4GlcCer - Forssman glycolipid GalNAc3GalNAc3Gal4Gal4GlcCer - P1 glycolipid Gal4Gal4GlcNAc3Gal4GlcCer - lactoneotetraosylceramide Gal4GlcNAc3Gal4GlcCer - B5 glycolipid Gal3Gal4GlcNAc3Gal4GlcCer - gangliotetraosylceramide Gal3GalNAc4Gal4GlcCer - GM1 Gal3GalNAc4(NeuAc3)Gal4GlcCer - RBC red blood cells - BSA bovine serum albumin - PBS phosphate-buffered saline - SDS sodium dodecyl sulfate - TLC thin-layer chromatography - HPLC high pressure liquid chromatography - MS mass spectrometry - FAB fast-atom bombardment - EI electron impact     

Quantitative conformational analysis of the core region of N-glycans using residual dipolar couplings, aqueous molecular dynamics, and steric alignment

A method is described for quantitatively investigating the dynamic conformation of small oligosaccharides containing an (16) linkage. It was applied to the oligosaccharide Man-(13) {Man- (16)}Man--O-Me, which is a core region frequently observed in N-linked glycans. The approach tests an aqueous molecular dynamics simulation, capable of predicting microscopic dynamics, against experimental residual dipolar couplings, by assuming that alignment is caused purely by steric hindrance. The experimental constraints were heteronuclear and homonuclear residual dipolar couplings, and in particular those within the (16) linkage itself. Powerful spin-state-selective pulse sequences and editing schemes were used to obtain the most relevant couplings for testing the model. Molecular dynamics simulations in water over a period of 50 ns were not able to predict the correct rotamer population at the (16) linkage to agree with the experimental data. However, this sampling problem could be corrected using a simple maximum likelihood optimisation, indicating that the simulation was modelling local dynamics correctly. The maximum likelihood prediction of the residual dipolar couplings was found to be an almost equal population of the gg and gt rotamer conformations at the (16) linkage, and the tg conformation was predicted to be unstable and unpopulated in aqueous solution. In this case all twelve measured residual dipolar couplings could be satisfied. This conformer population could also be used to make predictions of scalar couplings with the use of a previously derived empirical equation, and is qualitatively in agreement with previous predictions based on NMR, X-ray crystallography and optical data.     

A Trp in chi space

Our aim is to identify and synthesise a family of tryptophan mimetics which thoroughly explore chi space and then incorporate them into selected ligands for biological receptors e.g. Tachykinin NK₁. This project is considered important as only the - angles have previously been explored; obtaining a greater understanding of the spacial orientation of the side chain in chi space (₁-₂) should prove invaluable to the future design of peptidomimetics. The amino acid tryptophan was selected as it has proved pivotal in many pharmaceutic drug programmes.     

Synthesis of hydroxycinnamic acid esters of betacyanins via 1-O-acylglucosides of hydroxycinnamic acids by protein preparations from cell suspension cultures of Chenopodium rubrum and petals of Lampranthus sociorum

Protein preparations from cell suspension cultures of Chenopodium rubrum L. and petals of Lampranthus sociorum (L.Bol.) N.E.Br. (Mes.C.L.Bol.) catalyzed the formation of acylated betacyanins, i.e. celosianin I and II (p-coumaroyl-and feruloylamaranthins) and lampranthin I and II (p-coumaroyl- and feruloylbetanins), from 1-O-(p-coumaroyl)-and 1-O-feruloyl--glucoses as acyldonors and the respective acceptor molecules amaranthin (betanidin 5-O-sophorobiuronic acid = betanidin 5-O--[12]-glucuronosyl--glucoside) and betanin (betanidin 5-O--glucoside). The enzymes involved could generally be classified as 1-O-hydroxycinnamoyl--glucose:betanidinglycoside O-hydroxycinnamoyltransferases (EC 2.3.1.-).Abbreviations HCA hydroxycinnamic acid - HCA hydroxycinnamoyl (=hydroxycinnamic acid-ester moiety) - HPLC high-performance liquid chromatography - TLC thin-layer chromatography     

Comparison of human and chimpanzee ξ1 blobin genes

Summary The DNA base sequences of the entire chimpanzee 1 globin gene and an additional 1 kb of DNA flanking both the human and chimpanzee genes have been determined. Whereas the human 1 gene contains a termination codon in the sixth position, the chimpanzee gene appears to be functional. This finding confirms Proudfoot et al.'s suggestion that the human 1 gene was recently inactivated. Like the corresponding human 1 and 2 genes, the first and second introns of the chimpanzee 1 gene are occupied largely by tandem repeats of short oligonucleotides. These tandem repeats have undergone several rearrangements since the divergence of the human and chimpanzee 1 genes.     

Improvement of β-amylase thermostability in transgenic barley seeds and transgene stability in progeny

The genetic improvement of enzymes important in the brewing process is one of the main goals of barley biotechnology. For the improvement of -amylase thermostability in barley seeds, we have already constructed a mutant thermostable -amylase gene, using site-directed mutagenesis and random mutagenesis to achieve the substitution of seven amino acids of the original barley -amylase. This sevenfold-mutant barley -amylase showed a thermostability increased by 11.6 °C compared to the original enzyme. In the present article, a thermostable -amylase gene under the control of the barley -amylase promoter was introduced to barley protoplasts, and fertile plants were generated from 9 independent transgenic lines. Subsequent analyses indicated that the thermostable -amylase gene was expressed and -amylase activity derived from both native and modified genes was detected in the seeds of 6 transgenic lines. The transgene was stably transmitted to progeny, and thermostable -amylase was synthesized in T₄ seeds, demonstrating that our strategy is applicable for the improvement of seed quality for industrial utilization.     

Analysis of local conformation of membrane-bound and polycrystalline peptides by two-dimensional slow-spinning rotor-synchronized MAS exchange spectroscopy

2D slow-spinning, rotor-synchronized MAS exchange spectroscopy (SSRS-MASE) was applied to study local secondary structure of three structurally different peptides, two of which were membrane-bound. Each peptide was ¹³C carbonyl labeled at two adjacent residues in the peptide backbone. In general, this methodology is attractive for membrane-bound peptides because of its lenient spinning, decoupling, and RF homogeneity requirements.For a single set of raw SSRS-MASE data, two linearly independent methods exist for obtaining a 2D spectrum and each spectrum can be fit to obtain conformational constraints. An approach is described for combining the results of these two fits and this method is shown to work for spectra with both resolved and unresolved labeled site resonances. A spectrum is often fit well to a few different conformations which have somewhat different values of the fitting parameter ². A simple statistical theory is developed which relates the ² difference between a local minimum and the global minimum ² to the likelihood that the local minimum conformation is the correct structure. Because uncertainty in the simulated data can also contribute to the overall fitting uncertainty, an empirical method is described for incorporating the simulation uncertainty into the ² analysis.These data analysis methods were tested on polycrystalline Ala-Gly-Gly and then applied to the membrane-bound melittin and HIV-1 fusion peptides. Melittin gave a best-fit helical structure at Ala-4 while the fusion peptide gave a good-fit strand structure at Phe-8. The melittin analysis is in agreement with the known overall structure of this peptide.